data_A1IC3 # _chem_comp.id A1IC3 _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H28 N8 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-05 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IC3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FIM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IC3 C1 C1 C 0 1 Y N N N N N -33.822 -12.580 -16.727 -6.029 1.164 0.821 C1 A1IC3 1 A1IC3 C2 C2 C 0 1 Y N N N N N -35.309 -12.650 -14.961 -6.072 -0.915 1.821 C2 A1IC3 2 A1IC3 C3 C3 C 0 1 Y N N N N N -34.057 -10.856 -15.112 -4.167 -0.359 0.662 C3 A1IC3 3 A1IC3 N4 N1 N 0 1 Y N N N N N -32.467 -10.423 -16.660 -3.830 1.561 -0.401 N4 A1IC3 4 A1IC3 N5 N2 N 0 1 Y N N N N N -33.463 -9.664 -14.803 -2.925 -0.366 0.080 N5 A1IC3 5 A1IC3 C6 C4 C 0 1 N N S N N N -33.883 -8.784 -13.730 -1.948 -1.456 0.134 C6 A1IC3 6 A1IC3 N7 N3 N 0 1 N N N N N N -39.071 -4.588 -11.564 -0.095 2.468 0.674 N7 A1IC3 7 A1IC3 C8 C5 C 0 1 N N N N N N -34.844 -5.413 -14.241 1.504 -1.553 -1.036 C8 A1IC3 8 A1IC3 C12 C6 C 0 1 N N N N N N -38.353 -2.272 -11.250 0.884 3.547 -1.271 C12 A1IC3 9 A1IC3 C13 C7 C 0 1 N N N N N N -34.373 -3.046 -14.128 3.734 -0.778 -0.496 C13 A1IC3 10 A1IC3 C14 C8 C 0 1 N N N N N N -34.939 -2.854 -15.497 4.681 -0.559 0.685 C14 A1IC3 11 A1IC3 C15 C9 C 0 1 N N S N N N -34.461 -1.523 -16.058 6.082 -0.236 0.162 C15 A1IC3 12 A1IC3 C16 C10 C 0 1 N N N N N N -33.049 -1.692 -16.614 6.986 0.100 1.320 C16 A1IC3 13 A1IC3 C17 C11 C 0 1 N N S N N N -33.564 -6.836 -12.463 -0.660 -2.783 -1.451 C17 A1IC3 14 A1IC3 C18 C12 C 0 1 N N R N N N -32.767 -7.980 -13.074 -2.109 -2.384 -1.091 C18 A1IC3 15 A1IC3 N1 N4 N 0 1 N N N N N N -33.299 -13.131 -17.818 -6.644 2.371 0.536 N1 A1IC3 16 A1IC3 N2 N5 N 0 1 Y N N N N N -34.792 -13.245 -16.051 -6.649 0.241 1.548 N2 A1IC3 17 A1IC3 N3 N6 N 0 1 Y N N N N N -35.008 -11.480 -14.412 -4.864 -1.220 1.396 N3 A1IC3 18 A1IC3 C4 C13 C 0 1 Y N N N N N -33.428 -11.325 -16.245 -4.737 0.885 0.344 C4 A1IC3 19 A1IC3 C5 C14 C 0 1 Y N N N N N -32.538 -9.437 -15.785 -2.766 0.829 -0.558 C5 A1IC3 20 A1IC3 O1 O1 O 0 1 N N N N N N -34.753 -7.814 -14.278 -0.605 -0.934 0.028 O1 A1IC3 21 A1IC3 C7 C15 C 0 1 N N S N N N -34.778 -6.674 -13.387 0.204 -2.050 -0.402 C7 A1IC3 22 A1IC3 N6 N7 N 0 1 N N N N N N -34.967 -4.135 -13.446 2.366 -0.974 0.003 N6 A1IC3 23 A1IC3 C9 C16 C 0 1 N N N N N N -36.385 -3.878 -13.052 1.806 0.285 0.511 C9 A1IC3 24 A1IC3 C10 C17 C 0 1 N N N N N N -36.616 -4.096 -11.574 1.551 1.238 -0.659 C10 A1IC3 25 A1IC3 C11 C18 C 0 1 N N S N N N -37.997 -3.730 -11.010 1.133 2.608 -0.119 C11 A1IC3 26 A1IC3 O2 O2 O 0 1 N N N N N N -39.253 -2.029 -12.076 -0.246 3.765 -1.639 O2 A1IC3 27 A1IC3 O3 O3 O 0 1 N N N N N N -37.718 -1.455 -10.599 1.918 4.142 -1.887 O3 A1IC3 28 A1IC3 N8 N8 N 0 1 N N N N N N -35.365 -1.144 -17.155 6.618 -1.401 -0.556 N8 A1IC3 29 A1IC3 O4 O4 O 0 1 N N N N N N -32.883 -1.298 -17.769 7.747 -0.732 1.753 O4 A1IC3 30 A1IC3 O5 O5 O 0 1 N N N N N N -32.213 -2.340 -15.900 6.945 1.324 1.870 O5 A1IC3 31 A1IC3 O6 O6 O 0 1 N N N N N N -33.984 -7.080 -11.129 -0.489 -4.198 -1.341 O6 A1IC3 32 A1IC3 O7 O7 O 0 1 N N N N N N -31.989 -8.751 -12.181 -2.876 -3.539 -0.747 O7 A1IC3 33 A1IC3 H3 H1 H 0 1 N N N N N N -36.085 -13.208 -14.458 -6.611 -1.638 2.416 H3 A1IC3 34 A1IC3 H5 H2 H 0 1 N N N N N N -34.402 -9.366 -12.954 -2.063 -2.022 1.059 H5 A1IC3 35 A1IC3 H14 H3 H 0 1 N N N N N N -39.950 -4.317 -11.172 -0.819 2.009 0.141 H14 A1IC3 36 A1IC3 H15 H4 H 0 1 N N N N N N -39.103 -4.482 -12.558 0.085 1.978 1.537 H15 A1IC3 37 A1IC3 H8 H6 H 0 1 N N N N N N -33.927 -5.357 -14.845 2.019 -2.387 -1.512 H8 A1IC3 38 A1IC3 H7 H7 H 0 1 N N N N N N -35.717 -5.491 -14.906 1.276 -0.793 -1.784 H7 A1IC3 39 A1IC3 H17 H8 H 0 1 N N N N N N -34.542 -2.129 -13.544 3.760 0.094 -1.150 H17 A1IC3 40 A1IC3 H18 H9 H 0 1 N N N N N N -33.292 -3.231 -14.215 4.047 -1.661 -1.054 H18 A1IC3 41 A1IC3 H20 H10 H 0 1 N N N N N N -34.602 -3.671 -16.152 4.320 0.271 1.292 H20 A1IC3 42 A1IC3 H19 H11 H 0 1 N N N N N N -36.038 -2.857 -15.444 4.720 -1.464 1.292 H19 A1IC3 43 A1IC3 H21 H12 H 0 1 N N N N N N -34.465 -0.758 -15.268 6.029 0.616 -0.517 H21 A1IC3 44 A1IC3 H25 H13 H 0 1 N N N N N N -32.960 -5.918 -12.510 -0.410 -2.447 -2.457 H25 A1IC3 45 A1IC3 H27 H14 H 0 1 N N N N N N -32.125 -7.569 -13.867 -2.574 -1.847 -1.918 H27 A1IC3 46 A1IC3 H2 H15 H 0 1 N N N N N N -33.733 -14.016 -17.986 -7.538 2.550 0.867 H2 A1IC3 47 A1IC3 H1 H16 H 0 1 N N N N N N -33.455 -12.530 -18.602 -6.181 3.037 0.004 H1 A1IC3 48 A1IC3 H4 H17 H 0 1 N N N N N N -31.930 -8.546 -15.839 -1.886 1.124 -1.111 H4 A1IC3 49 A1IC3 H6 H18 H 0 1 N N N N N N -35.686 -6.718 -12.768 0.421 -2.708 0.440 H6 A1IC3 50 A1IC3 H10 H20 H 0 1 N N N N N N -36.638 -2.837 -13.300 0.867 0.083 1.026 H10 A1IC3 51 A1IC3 H9 H21 H 0 1 N N N N N N -37.039 -4.559 -13.617 2.510 0.743 1.205 H9 A1IC3 52 A1IC3 H11 H22 H 0 1 N N N N N N -36.449 -5.164 -11.368 2.461 1.342 -1.248 H11 A1IC3 53 A1IC3 H12 H23 H 0 1 N N N N N N -35.870 -3.497 -11.032 0.755 0.838 -1.287 H12 A1IC3 54 A1IC3 H13 H24 H 0 1 N N N N N N -37.961 -3.889 -9.922 1.928 3.008 0.510 H13 A1IC3 55 A1IC3 H30 H25 H 0 1 N N N N N N -38.014 -0.578 -10.815 1.708 4.736 -2.621 H30 A1IC3 56 A1IC3 H23 H26 H 0 1 N N N N N N -35.072 -0.270 -17.542 6.677 -2.204 0.052 H23 A1IC3 57 A1IC3 H22 H27 H 0 1 N N N N N N -35.341 -1.848 -17.865 6.065 -1.607 -1.374 H22 A1IC3 58 A1IC3 H31 H29 H 0 1 N N N N N N -31.416 -2.483 -16.397 7.544 1.492 2.611 H31 A1IC3 59 A1IC3 H26 H30 H 0 1 N N N N N N -33.222 -7.178 -10.570 -1.054 -4.710 -1.936 H26 A1IC3 60 A1IC3 H28 H31 H 0 1 N N N N N N -31.536 -9.433 -12.663 -3.008 -4.156 -1.479 H28 A1IC3 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IC3 N1 C1 SING N N 1 A1IC3 C1 N2 DOUB Y N 2 A1IC3 N2 C2 SING Y N 3 A1IC3 C2 N3 DOUB Y N 4 A1IC3 N3 C3 SING Y N 5 A1IC3 C3 C4 DOUB Y N 6 A1IC3 C4 N4 SING Y N 7 A1IC3 N4 C5 DOUB Y N 8 A1IC3 C5 N5 SING Y N 9 A1IC3 N5 C6 SING N N 10 A1IC3 C6 O1 SING N N 11 A1IC3 O1 C7 SING N N 12 A1IC3 C7 C8 SING N N 13 A1IC3 C8 N6 SING N N 14 A1IC3 N6 C9 SING N N 15 A1IC3 C9 C10 SING N N 16 A1IC3 C10 C11 SING N N 17 A1IC3 C11 N7 SING N N 18 A1IC3 C11 C12 SING N N 19 A1IC3 C12 O2 DOUB N N 20 A1IC3 C12 O3 SING N N 21 A1IC3 N6 C13 SING N N 22 A1IC3 C13 C14 SING N N 23 A1IC3 C14 C15 SING N N 24 A1IC3 C15 N8 SING N N 25 A1IC3 C15 C16 SING N N 26 A1IC3 C16 O4 DOUB N N 27 A1IC3 C16 O5 SING N N 28 A1IC3 C7 C17 SING N N 29 A1IC3 C17 O6 SING N N 30 A1IC3 C17 C18 SING N N 31 A1IC3 C18 O7 SING N N 32 A1IC3 C1 C4 SING Y N 33 A1IC3 C6 C18 SING N N 34 A1IC3 C3 N5 SING Y N 35 A1IC3 C2 H3 SING N N 36 A1IC3 C6 H5 SING N N 37 A1IC3 N7 H14 SING N N 38 A1IC3 N7 H15 SING N N 39 A1IC3 C8 H8 SING N N 40 A1IC3 C8 H7 SING N N 41 A1IC3 C13 H17 SING N N 42 A1IC3 C13 H18 SING N N 43 A1IC3 C14 H20 SING N N 44 A1IC3 C14 H19 SING N N 45 A1IC3 C15 H21 SING N N 46 A1IC3 C17 H25 SING N N 47 A1IC3 C18 H27 SING N N 48 A1IC3 N1 H2 SING N N 49 A1IC3 N1 H1 SING N N 50 A1IC3 C5 H4 SING N N 51 A1IC3 C7 H6 SING N N 52 A1IC3 C9 H10 SING N N 53 A1IC3 C9 H9 SING N N 54 A1IC3 C10 H11 SING N N 55 A1IC3 C10 H12 SING N N 56 A1IC3 C11 H13 SING N N 57 A1IC3 O3 H30 SING N N 58 A1IC3 N8 H23 SING N N 59 A1IC3 N8 H22 SING N N 60 A1IC3 O5 H31 SING N N 61 A1IC3 O6 H26 SING N N 62 A1IC3 O7 H28 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IC3 InChI InChI 1.06 "InChI=1S/C18H28N8O7/c19-8(17(29)30)1-3-25(4-2-9(20)18(31)32)5-10-12(27)13(28)16(33-10)26-7-24-11-14(21)22-6-23-15(11)26/h6-10,12-13,16,27-28H,1-5,19-20H2,(H,29,30)(H,31,32)(H2,21,22,23)/t8-,9-,10-,12+,13+,16?/m0/s1" A1IC3 InChIKey InChI 1.06 DTJNOPJPESXLEA-WONPEBRPSA-N A1IC3 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CC[C@H](N)C(O)=O)C[C@@H]1O[C@@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" A1IC3 SMILES CACTVS 3.385 "N[CH](CCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" A1IC3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@@H](C(=O)O)N)CC[C@@H](C(=O)O)N)O)O)N" A1IC3 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC(C(=O)O)N)CCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1IC3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IC3 "Create component" 2024-06-05 PDBE A1IC3 "Initial release" 2025-06-11 RCSB #