data_A1IC5 # _chem_comp.id A1IC5 _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-3-azanylhexyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H34 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-05 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IC5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FKM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IC5 C1 C1 C 0 1 N N N N N N -31.859 0.753 -16.780 -7.108 -3.570 -3.264 C1 A1IC5 1 A1IC5 C2 C2 C 0 1 N N N N N N -33.288 0.489 -16.677 -6.418 -3.489 -1.901 C2 A1IC5 2 A1IC5 C3 C3 C 0 1 N N N N N N -33.567 -0.887 -16.080 -5.521 -2.250 -1.857 C3 A1IC5 3 A1IC5 C4 C4 C 0 1 N N S N N N -34.823 -1.605 -16.361 -4.831 -2.168 -0.494 C4 A1IC5 4 A1IC5 C5 C5 C 0 1 N N N N N N -35.360 -2.737 -15.472 -3.841 -1.002 -0.492 C5 A1IC5 5 A1IC5 C6 C6 C 0 1 N N N N N N -34.641 -3.032 -14.165 -3.061 -0.996 0.825 C6 A1IC5 6 A1IC5 C7 C7 C 0 1 N N N N N N -36.593 -4.048 -13.125 -2.816 1.413 0.832 C7 A1IC5 7 A1IC5 C8 C8 C 0 1 N N N N N N -36.701 -4.112 -11.574 -1.846 2.526 0.432 C8 A1IC5 8 A1IC5 C9 C9 C 0 1 N N S N N N -38.077 -3.741 -10.993 -2.609 3.847 0.310 C9 A1IC5 9 A1IC5 C10 C10 C 0 1 N N N N N N -38.415 -2.271 -11.280 -1.639 4.963 0.018 C10 A1IC5 10 A1IC5 C11 C11 C 0 1 N N N N N N -35.013 -5.451 -14.387 -1.183 0.026 1.961 C11 A1IC5 11 A1IC5 C12 C12 C 0 1 N N S N N N -34.977 -6.705 -13.528 -0.136 -1.051 1.672 C12 A1IC5 12 A1IC5 N1 N1 N 0 1 N N N N N N -35.855 -0.949 -17.223 -5.838 -1.957 0.554 N1 A1IC5 13 A1IC5 N2 N2 N 0 1 N N N N N N -35.200 -4.241 -13.535 -2.111 0.124 0.826 N2 A1IC5 14 A1IC5 N3 N3 N 0 1 N N N N N N -39.150 -4.623 -11.546 -3.586 3.750 -0.784 N3 A1IC5 15 A1IC5 O1 O1 O 0 1 N N N N N N -39.326 -2.084 -12.104 -1.433 5.301 -1.123 O1 A1IC5 16 A1IC5 O2 O2 O 0 1 N N N N N N -37.747 -1.419 -10.680 -1.003 5.580 1.027 O2 A1IC5 17 A1IC5 O3 O3 O 0 1 N N N N N N -34.980 -7.842 -14.427 0.614 -0.702 0.497 O3 A1IC5 18 A1IC5 C13 C13 C 0 1 N N S N N N -34.128 -8.816 -13.890 1.962 -1.177 0.700 C13 A1IC5 19 A1IC5 N4 N4 N 0 1 Y N N N N N -33.730 -9.713 -14.933 2.899 -0.455 -0.164 N4 A1IC5 20 A1IC5 C14 C14 C 0 1 Y N N N N N -32.892 -9.472 -15.986 2.711 0.784 -0.701 C14 A1IC5 21 A1IC5 N5 N5 N 0 1 Y N N N N N -32.827 -10.490 -16.837 3.744 1.120 -1.417 N5 A1IC5 22 A1IC5 C15 C15 C 0 1 Y N N N N N -33.765 -11.391 -16.368 4.658 0.120 -1.387 C15 A1IC5 23 A1IC5 C16 C16 C 0 1 Y N N N N N -34.134 -12.688 -16.802 5.928 -0.075 -1.956 C16 A1IC5 24 A1IC5 N6 N6 N 0 1 N N N N N N -33.635 -13.244 -17.894 6.502 0.896 -2.756 N6 A1IC5 25 A1IC5 N7 N7 N 0 1 Y N N N N N -35.083 -13.340 -16.085 6.564 -1.215 -1.707 N7 A1IC5 26 A1IC5 C17 C17 C 0 1 Y N N N N N -35.554 -12.752 -14.978 6.024 -2.148 -0.944 C17 A1IC5 27 A1IC5 N8 N8 N 0 1 Y N N N N N -35.228 -11.568 -14.454 4.838 -2.008 -0.391 N8 A1IC5 28 A1IC5 C18 C18 C 0 1 Y N N N N N -34.330 -10.928 -15.211 4.129 -0.900 -0.578 C18 A1IC5 29 A1IC5 C19 C19 C 0 1 N N R N N N -32.995 -8.025 -13.274 2.237 -0.856 2.191 C19 A1IC5 30 A1IC5 O4 O4 O 0 1 N N N N N N -32.166 -8.792 -12.415 3.241 -1.724 2.722 O4 A1IC5 31 A1IC5 C20 C20 C 0 1 N N S N N N -33.770 -6.873 -12.641 0.862 -1.139 2.843 C20 A1IC5 32 A1IC5 O5 O5 O 0 1 N N N N N N -34.088 -7.089 -11.254 0.842 -2.446 3.421 O5 A1IC5 33 A1IC5 H3 H1 H 0 1 N N N N N N -31.700 1.751 -17.214 -6.355 -3.638 -4.049 H3 A1IC5 34 A1IC5 H2 H2 H 0 1 N N N N N N -31.406 0.712 -15.779 -7.747 -4.453 -3.296 H2 A1IC5 35 A1IC5 H1 H3 H 0 1 N N N N N N -31.392 -0.005 -17.425 -7.714 -2.677 -3.418 H1 A1IC5 36 A1IC5 H5 H4 H 0 1 N N N N N N -33.747 1.256 -16.035 -7.170 -3.421 -1.116 H5 A1IC5 37 A1IC5 H4 H5 H 0 1 N N N N N N -33.733 0.538 -17.682 -5.811 -4.381 -1.747 H4 A1IC5 38 A1IC5 H6 H6 H 0 1 N N N N N N -32.751 -1.543 -16.417 -4.768 -2.317 -2.642 H6 A1IC5 39 A1IC5 H7 H7 H 0 1 N N N N N N -33.514 -0.769 -14.988 -6.127 -1.357 -2.010 H7 A1IC5 40 A1IC5 H8 H8 H 0 1 N N N N N N -34.414 -2.259 -17.145 -4.296 -3.099 -0.301 H8 A1IC5 41 A1IC5 H11 H9 H 0 1 N N N N N N -36.402 -2.488 -15.221 -3.147 -1.113 -1.325 H11 A1IC5 42 A1IC5 H12 H10 H 0 1 N N N N N N -35.338 -3.659 -16.071 -4.385 -0.063 -0.596 H12 A1IC5 43 A1IC5 H14 H11 H 0 1 N N N N N N -33.571 -3.190 -14.367 -3.755 -0.885 1.657 H14 A1IC5 44 A1IC5 H13 H12 H 0 1 N N N N N N -34.763 -2.178 -13.483 -2.517 -1.935 0.928 H13 A1IC5 45 A1IC5 H16 H13 H 0 1 N N N N N N -36.944 -3.066 -13.475 -3.203 1.610 1.832 H16 A1IC5 46 A1IC5 H15 H14 H 0 1 N N N N N N -37.217 -4.839 -13.567 -3.642 1.378 0.122 H15 A1IC5 47 A1IC5 H17 H15 H 0 1 N N N N N N -36.465 -5.139 -11.259 -1.071 2.624 1.191 H17 A1IC5 48 A1IC5 H18 H16 H 0 1 N N N N N N -35.957 -3.420 -11.153 -1.388 2.282 -0.527 H18 A1IC5 49 A1IC5 H19 H17 H 0 1 N N N N N N -38.036 -3.877 -9.902 -3.130 4.054 1.245 H19 A1IC5 50 A1IC5 H23 H18 H 0 1 N N N N N N -35.847 -5.524 -15.100 -1.738 -0.238 2.862 H23 A1IC5 51 A1IC5 H24 H19 H 0 1 N N N N N N -34.066 -5.363 -14.939 -0.687 0.985 2.109 H24 A1IC5 52 A1IC5 H25 H20 H 0 1 N N N N N N -35.882 -6.728 -12.903 -0.626 -2.014 1.527 H25 A1IC5 53 A1IC5 H10 H21 H 0 1 N N N N N N -36.644 -1.556 -17.320 -6.348 -1.100 0.398 H10 A1IC5 54 A1IC5 H35 H22 H 0 1 N N N N N N -36.145 -0.091 -16.800 -6.466 -2.745 0.616 H35 A1IC5 55 A1IC5 H21 H25 H 0 1 N N N N N N -40.032 -4.362 -11.154 -4.147 4.586 -0.843 H21 A1IC5 56 A1IC5 H22 H26 H 0 1 N N N N N N -39.185 -4.522 -12.540 -3.127 3.558 -1.662 H22 A1IC5 57 A1IC5 H37 H28 H 0 1 N N N N N N -38.032 -0.551 -10.941 -0.390 6.290 0.791 H37 A1IC5 58 A1IC5 H26 H29 H 0 1 N N N N N N -34.642 -9.375 -13.094 2.022 -2.250 0.518 H26 A1IC5 59 A1IC5 H27 H30 H 0 1 N N N N N N -32.341 -8.552 -16.113 1.834 1.397 -0.553 H27 A1IC5 60 A1IC5 H28 H31 H 0 1 N N N N N N -34.065 -14.134 -18.042 6.028 1.724 -2.930 H28 A1IC5 61 A1IC5 H29 H32 H 0 1 N N N N N N -33.814 -12.653 -18.680 7.380 0.749 -3.144 H29 A1IC5 62 A1IC5 H30 H33 H 0 1 N N N N N N -36.300 -13.312 -14.434 6.576 -3.059 -0.768 H30 A1IC5 63 A1IC5 H31 H34 H 0 1 N N N N N N -32.386 -7.612 -14.091 2.522 0.188 2.319 H31 A1IC5 64 A1IC5 H32 H35 H 0 1 N N N N N N -31.478 -8.240 -12.063 3.449 -1.562 3.653 H32 A1IC5 65 A1IC5 H33 H36 H 0 1 N N N N N N -33.154 -5.966 -12.728 0.634 -0.384 3.596 H33 A1IC5 66 A1IC5 H34 H37 H 0 1 N N N N N N -34.568 -6.341 -10.918 1.452 -2.557 4.163 H34 A1IC5 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IC5 C1 C2 SING N N 1 A1IC5 C2 C3 SING N N 2 A1IC5 C3 C4 SING N N 3 A1IC5 C4 N1 SING N N 4 A1IC5 C4 C5 SING N N 5 A1IC5 C5 C6 SING N N 6 A1IC5 C6 N2 SING N N 7 A1IC5 N2 C7 SING N N 8 A1IC5 C7 C8 SING N N 9 A1IC5 C8 C9 SING N N 10 A1IC5 C9 N3 SING N N 11 A1IC5 C9 C10 SING N N 12 A1IC5 C10 O1 DOUB N N 13 A1IC5 C10 O2 SING N N 14 A1IC5 N2 C11 SING N N 15 A1IC5 C11 C12 SING N N 16 A1IC5 C12 O3 SING N N 17 A1IC5 O3 C13 SING N N 18 A1IC5 C13 N4 SING N N 19 A1IC5 N4 C14 SING Y N 20 A1IC5 C14 N5 DOUB Y N 21 A1IC5 N5 C15 SING Y N 22 A1IC5 C15 C16 DOUB Y N 23 A1IC5 C16 N6 SING N N 24 A1IC5 C16 N7 SING Y N 25 A1IC5 N7 C17 DOUB Y N 26 A1IC5 C17 N8 SING Y N 27 A1IC5 N8 C18 DOUB Y N 28 A1IC5 C13 C19 SING N N 29 A1IC5 C19 O4 SING N N 30 A1IC5 C19 C20 SING N N 31 A1IC5 C20 O5 SING N N 32 A1IC5 C12 C20 SING N N 33 A1IC5 N4 C18 SING Y N 34 A1IC5 C15 C18 SING Y N 35 A1IC5 C1 H3 SING N N 36 A1IC5 C1 H2 SING N N 37 A1IC5 C1 H1 SING N N 38 A1IC5 C2 H5 SING N N 39 A1IC5 C2 H4 SING N N 40 A1IC5 C3 H6 SING N N 41 A1IC5 C3 H7 SING N N 42 A1IC5 C4 H8 SING N N 43 A1IC5 C5 H11 SING N N 44 A1IC5 C5 H12 SING N N 45 A1IC5 C6 H14 SING N N 46 A1IC5 C6 H13 SING N N 47 A1IC5 C7 H16 SING N N 48 A1IC5 C7 H15 SING N N 49 A1IC5 C8 H17 SING N N 50 A1IC5 C8 H18 SING N N 51 A1IC5 C9 H19 SING N N 52 A1IC5 C11 H23 SING N N 53 A1IC5 C11 H24 SING N N 54 A1IC5 C12 H25 SING N N 55 A1IC5 N1 H10 SING N N 56 A1IC5 N1 H35 SING N N 57 A1IC5 N3 H21 SING N N 58 A1IC5 N3 H22 SING N N 59 A1IC5 O2 H37 SING N N 60 A1IC5 C13 H26 SING N N 61 A1IC5 C14 H27 SING N N 62 A1IC5 N6 H28 SING N N 63 A1IC5 N6 H29 SING N N 64 A1IC5 C17 H30 SING N N 65 A1IC5 C19 H31 SING N N 66 A1IC5 O4 H32 SING N N 67 A1IC5 C20 H33 SING N N 68 A1IC5 O5 H34 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IC5 InChI InChI 1.06 "InChI=1S/C20H34N8O5/c1-2-3-11(21)4-6-27(7-5-12(22)20(31)32)8-13-15(29)16(30)19(33-13)28-10-26-14-17(23)24-9-25-18(14)28/h9-13,15-16,19,29-30H,2-8,21-22H2,1H3,(H,31,32)(H2,23,24,25)/t11-,12-,13-,15+,16+,19?/m0/s1" A1IC5 InChIKey InChI 1.06 CVZJWTGASWYLLH-MUQIURABSA-N A1IC5 SMILES_CANONICAL CACTVS 3.385 "CCC[C@H](N)CCN(CC[C@H](N)C(O)=O)C[C@@H]1O[C@@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" A1IC5 SMILES CACTVS 3.385 "CCC[CH](N)CCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" A1IC5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H](CCN(CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" A1IC5 SMILES "OpenEye OEToolkits" 2.0.7 "CCCC(CCN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1IC5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-3-azanylhexyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IC5 "Create component" 2024-06-05 PDBE A1IC5 "Initial release" 2025-06-18 RCSB #