data_A1IC7 # _chem_comp.id A1IC7 _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-3-azanyl-3-phenyl-propyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H32 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-05 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.551 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IC7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FKG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IC7 C1 C1 C 0 1 Y N N N N N -33.882 -12.594 -16.710 -6.562 0.933 1.527 C1 A1IC7 1 A1IC7 C2 C2 C 0 1 Y N N N N N -35.304 -12.688 -14.887 -6.481 -1.285 2.162 C2 A1IC7 2 A1IC7 C3 C3 C 0 1 Y N N N N N -34.103 -10.854 -15.114 -4.718 -0.495 0.916 C3 A1IC7 3 A1IC7 C4 C4 C 0 1 Y N N N N N -33.485 -11.327 -16.248 -5.328 0.769 0.875 C4 A1IC7 4 A1IC7 C5 C5 C 0 1 Y N N N N N -32.637 -9.412 -15.832 -3.468 0.913 -0.230 C5 A1IC7 5 A1IC7 C6 C6 C 0 1 N N R N N N -33.938 -8.752 -13.762 -2.563 -1.434 -0.023 C6 A1IC7 6 A1IC7 C9 C7 C 0 1 N N N N N N -36.400 -3.892 -13.011 1.255 0.473 0.085 C9 A1IC7 7 A1IC7 C13 C8 C 0 1 N N N N N N -34.495 -2.962 -14.110 3.050 -0.679 -1.062 C13 A1IC7 8 A1IC7 C15 C9 C 0 1 N N S N N N -35.023 -1.302 -15.936 5.479 -0.605 -0.481 C15 A1IC7 9 A1IC7 C16 C10 C 0 1 Y N N N N N -33.615 -0.883 -16.264 6.468 -0.404 0.638 C16 A1IC7 10 A1IC7 C17 C11 C 0 1 Y N N N N N -33.172 0.372 -15.888 7.018 0.844 0.859 C17 A1IC7 11 A1IC7 C19 C12 C 0 1 Y N N N N N -31.158 0.053 -17.080 8.281 -0.036 2.692 C19 A1IC7 12 A1IC7 C21 C13 C 0 1 Y N N N N N -32.905 -1.588 -17.212 6.820 -1.468 1.448 C21 A1IC7 13 A1IC7 C22 C14 C 0 1 N N S N N N -33.577 -6.821 -12.491 -1.443 -2.440 -1.938 C22 A1IC7 14 A1IC7 N1 N1 N 0 1 N N N N N N -33.340 -13.182 -17.751 -7.213 2.154 1.516 N1 A1IC7 15 A1IC7 N2 N2 N 0 1 Y N N N N N -34.809 -13.279 -15.989 -7.092 -0.114 2.151 N2 A1IC7 16 A1IC7 N3 N3 N 0 1 Y N N N N N -35.019 -11.492 -14.388 -5.325 -1.484 1.565 N3 A1IC7 17 A1IC7 N4 N4 N 0 1 Y N N N N N -32.582 -10.394 -16.706 -4.513 1.582 0.160 N4 A1IC7 18 A1IC7 N5 N5 N 0 1 Y N N N N N -33.547 -9.629 -14.849 -3.547 -0.374 0.212 N5 A1IC7 19 A1IC7 O1 O1 O 0 1 N N N N N N -34.804 -7.767 -14.296 -1.243 -0.868 -0.177 O1 A1IC7 20 A1IC7 C7 C15 C 0 1 N N R N N N -34.789 -6.625 -13.412 -0.477 -1.875 -0.873 C7 A1IC7 21 A1IC7 C8 C16 C 0 1 N N N N N N -34.830 -5.362 -14.247 0.746 -1.245 -1.544 C8 A1IC7 22 A1IC7 N6 N6 N 0 1 N N N N N N -34.977 -4.101 -13.430 1.692 -0.796 -0.514 N6 A1IC7 23 A1IC7 C10 C17 C 0 1 N N N N N N -36.603 -4.125 -11.524 1.070 1.519 -1.016 C10 A1IC7 24 A1IC7 C11 C18 C 0 1 N N S N N N -37.990 -3.780 -10.959 0.758 2.876 -0.382 C11 A1IC7 25 A1IC7 N7 N7 N 0 1 N N N N N N -39.054 -4.656 -11.531 -0.498 2.786 0.375 N7 A1IC7 26 A1IC7 C12 C19 C 0 1 N N N N N N -38.370 -2.309 -11.193 0.618 3.916 -1.464 C12 A1IC7 27 A1IC7 O2 O2 O 0 1 N N N N N N -39.259 -2.090 -12.025 -0.479 4.257 -1.836 O2 A1IC7 28 A1IC7 O3 O3 O 0 1 N N N N N N -37.760 -1.456 -10.551 1.714 4.463 -2.015 O3 A1IC7 29 A1IC7 C14 C20 C 0 1 N N N N N N -35.174 -2.733 -15.448 4.058 -0.601 0.086 C14 A1IC7 30 A1IC7 N8 N8 N 0 1 N N N N N N -35.763 -1.142 -17.220 5.739 -1.892 -1.140 N8 A1IC7 31 A1IC7 C18 C21 C 0 1 Y N N N N N -31.926 0.817 -16.253 7.925 1.028 1.885 C18 A1IC7 32 A1IC7 C20 C22 C 0 1 Y N N N N N -31.634 -1.162 -17.534 7.726 -1.284 2.475 C20 A1IC7 33 A1IC7 O4 O4 O 0 1 N N N N N N -33.989 -7.043 -11.143 -1.252 -3.848 -2.090 O4 A1IC7 34 A1IC7 C23 C23 C 0 1 N N R N N N -32.790 -7.981 -13.117 -2.847 -2.143 -1.366 C23 A1IC7 35 A1IC7 O5 O5 O 0 1 N N N N N N -31.967 -8.735 -12.243 -3.566 -3.358 -1.148 O5 A1IC7 36 A1IC7 H3 H1 H 0 1 N N N N N N -36.031 -13.264 -14.334 -6.947 -2.110 2.681 H3 A1IC7 37 A1IC7 H4 H2 H 0 1 N N N N N N -32.022 -8.526 -15.891 -2.657 1.318 -0.817 H4 A1IC7 38 A1IC7 H5 H3 H 0 1 N N N N N N -34.455 -9.332 -12.984 -2.576 -2.153 0.796 H5 A1IC7 39 A1IC7 H9 H4 H 0 1 N N N N N N -36.691 -2.859 -13.250 0.310 0.322 0.606 H9 A1IC7 40 A1IC7 H10 H5 H 0 1 N N N N N N -37.040 -4.592 -13.569 2.009 0.819 0.792 H10 A1IC7 41 A1IC7 H17 H6 H 0 1 N N N N N N -34.664 -2.079 -13.476 3.269 -1.551 -1.679 H17 A1IC7 42 A1IC7 H18 H7 H 0 1 N N N N N N -33.416 -3.088 -14.283 3.121 0.223 -1.670 H18 A1IC7 43 A1IC7 H21 H8 H 0 1 N N N N N N -35.441 -0.618 -15.183 5.583 0.202 -1.207 H21 A1IC7 44 A1IC7 H24 H9 H 0 1 N N N N N N -33.815 1.010 -15.300 6.740 1.676 0.228 H24 A1IC7 45 A1IC7 H26 H10 H 0 1 N N N N N N -30.179 0.397 -17.380 8.990 0.108 3.495 H26 A1IC7 46 A1IC7 H28 H11 H 0 1 N N N N N N -33.335 -2.455 -17.692 6.386 -2.442 1.279 H28 A1IC7 47 A1IC7 H29 H12 H 0 1 N N N N N N -32.955 -5.915 -12.543 -1.303 -1.931 -2.892 H29 A1IC7 48 A1IC7 H2 H13 H 0 1 N N N N N N -33.722 -14.100 -17.852 -8.066 2.253 1.966 H2 A1IC7 49 A1IC7 H1 H14 H 0 1 N N N N N N -33.534 -12.648 -18.574 -6.816 2.911 1.057 H1 A1IC7 50 A1IC7 H6 H15 H 0 1 N N N N N N -35.693 -6.648 -12.786 -0.167 -2.661 -0.184 H6 A1IC7 51 A1IC7 H7 H16 H 0 1 N N N N N N -33.895 -5.296 -14.823 1.229 -1.982 -2.185 H7 A1IC7 52 A1IC7 H8 H17 H 0 1 N N N N N N -35.683 -5.430 -14.938 0.431 -0.392 -2.145 H8 A1IC7 53 A1IC7 H11 H19 H 0 1 N N N N N N -36.416 -5.190 -11.324 1.985 1.594 -1.604 H11 A1IC7 54 A1IC7 H12 H20 H 0 1 N N N N N N -35.862 -3.516 -10.986 0.245 1.223 -1.664 H12 A1IC7 55 A1IC7 H13 H21 H 0 1 N N N N N N -37.957 -3.946 -9.872 1.568 3.158 0.290 H13 A1IC7 56 A1IC7 H14 H22 H 0 1 N N N N N N -39.940 -4.403 -11.142 -0.737 3.676 0.785 H14 A1IC7 57 A1IC7 H15 H23 H 0 1 N N N N N N -39.082 -4.541 -12.524 -1.247 2.443 -0.207 H15 A1IC7 58 A1IC7 H34 H25 H 0 1 N N N N N N -38.076 -0.593 -10.791 1.574 5.125 -2.705 H34 A1IC7 59 A1IC7 H19 H26 H 0 1 N N N N N N -34.727 -3.409 -16.192 3.895 0.317 0.651 H19 A1IC7 60 A1IC7 H20 H27 H 0 1 N N N N N N -36.245 -2.960 -15.344 3.927 -1.460 0.744 H20 A1IC7 61 A1IC7 H23 H28 H 0 1 N N N N N N -35.667 -0.201 -17.546 5.649 -2.657 -0.488 H23 A1IC7 62 A1IC7 H35 H29 H 0 1 N N N N N N -35.388 -1.771 -17.901 5.131 -2.021 -1.935 H35 A1IC7 63 A1IC7 H25 H31 H 0 1 N N N N N N -31.557 1.764 -15.888 8.356 2.004 2.057 H25 A1IC7 64 A1IC7 H27 H32 H 0 1 N N N N N N -31.002 -1.786 -18.149 8.004 -2.115 3.106 H27 A1IC7 65 A1IC7 H30 H33 H 0 1 N N N N N N -33.224 -7.161 -10.593 -1.873 -4.265 -2.703 H30 A1IC7 66 A1IC7 H31 H34 H 0 1 N N N N N N -32.171 -7.565 -13.925 -3.401 -1.485 -2.036 H31 A1IC7 67 A1IC7 H32 H35 H 0 1 N N N N N N -31.530 -9.422 -12.733 -3.771 -3.845 -1.958 H32 A1IC7 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IC7 N1 C1 SING N N 1 A1IC7 C1 N2 DOUB Y N 2 A1IC7 N2 C2 SING Y N 3 A1IC7 C2 N3 DOUB Y N 4 A1IC7 N3 C3 SING Y N 5 A1IC7 C3 C4 DOUB Y N 6 A1IC7 C4 N4 SING Y N 7 A1IC7 N4 C5 DOUB Y N 8 A1IC7 C5 N5 SING Y N 9 A1IC7 N5 C6 SING N N 10 A1IC7 C6 O1 SING N N 11 A1IC7 O1 C7 SING N N 12 A1IC7 C7 C8 SING N N 13 A1IC7 C8 N6 SING N N 14 A1IC7 N6 C9 SING N N 15 A1IC7 C9 C10 SING N N 16 A1IC7 C10 C11 SING N N 17 A1IC7 C11 N7 SING N N 18 A1IC7 C11 C12 SING N N 19 A1IC7 C12 O2 DOUB N N 20 A1IC7 C12 O3 SING N N 21 A1IC7 N6 C13 SING N N 22 A1IC7 C13 C14 SING N N 23 A1IC7 C14 C15 SING N N 24 A1IC7 C15 N8 SING N N 25 A1IC7 C15 C16 SING N N 26 A1IC7 C16 C17 DOUB Y N 27 A1IC7 C17 C18 SING Y N 28 A1IC7 C18 C19 DOUB Y N 29 A1IC7 C19 C20 SING Y N 30 A1IC7 C20 C21 DOUB Y N 31 A1IC7 C7 C22 SING N N 32 A1IC7 C22 O4 SING N N 33 A1IC7 C22 C23 SING N N 34 A1IC7 C23 O5 SING N N 35 A1IC7 C1 C4 SING Y N 36 A1IC7 C6 C23 SING N N 37 A1IC7 C3 N5 SING Y N 38 A1IC7 C16 C21 SING Y N 39 A1IC7 C2 H3 SING N N 40 A1IC7 C5 H4 SING N N 41 A1IC7 C6 H5 SING N N 42 A1IC7 C9 H9 SING N N 43 A1IC7 C9 H10 SING N N 44 A1IC7 C13 H17 SING N N 45 A1IC7 C13 H18 SING N N 46 A1IC7 C15 H21 SING N N 47 A1IC7 C17 H24 SING N N 48 A1IC7 C19 H26 SING N N 49 A1IC7 C21 H28 SING N N 50 A1IC7 C22 H29 SING N N 51 A1IC7 N1 H2 SING N N 52 A1IC7 N1 H1 SING N N 53 A1IC7 C7 H6 SING N N 54 A1IC7 C8 H7 SING N N 55 A1IC7 C8 H8 SING N N 56 A1IC7 C10 H11 SING N N 57 A1IC7 C10 H12 SING N N 58 A1IC7 C11 H13 SING N N 59 A1IC7 N7 H14 SING N N 60 A1IC7 N7 H15 SING N N 61 A1IC7 O3 H34 SING N N 62 A1IC7 C14 H19 SING N N 63 A1IC7 C14 H20 SING N N 64 A1IC7 N8 H23 SING N N 65 A1IC7 N8 H35 SING N N 66 A1IC7 C18 H25 SING N N 67 A1IC7 C20 H27 SING N N 68 A1IC7 O4 H30 SING N N 69 A1IC7 C23 H31 SING N N 70 A1IC7 O5 H32 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IC7 InChI InChI 1.06 "InChI=1S/C23H32N8O5/c24-14(13-4-2-1-3-5-13)6-8-30(9-7-15(25)23(34)35)10-16-18(32)19(33)22(36-16)31-12-29-17-20(26)27-11-28-21(17)31/h1-5,11-12,14-16,18-19,22,32-33H,6-10,24-25H2,(H,34,35)(H2,26,27,28)/t14-,15-,16+,18+,19+,22+/m0/s1" A1IC7 InChIKey InChI 1.06 WFYLGDBSFNZEJJ-FMLXRRIPSA-N A1IC7 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CC[C@H](N)c1ccccc1)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O" A1IC7 SMILES CACTVS 3.385 "N[CH](CCN(CC[CH](N)c1ccccc1)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O" A1IC7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@H](CCN(CC[C@@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N" A1IC7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(CCN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1IC7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-3-azanyl-3-phenyl-propyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IC7 "Create component" 2024-06-05 PDBE A1IC7 "Initial release" 2025-06-18 RCSB #