data_A1IC8 # _chem_comp.id A1IC8 _chem_comp.name "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{R})-3-azanylbutyl]amino]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H30 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-05 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IC8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FKV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IC8 C13 C1 C 0 1 Y N N N N N -33.702 -11.331 -16.314 -4.975 -1.525 -0.025 C13 A1IC8 1 A1IC8 C18 C2 C 0 1 N N S N N N -33.778 -6.800 -12.567 -0.950 2.342 1.364 C18 A1IC8 2 A1IC8 C17 C3 C 0 1 N N R N N N -33.008 -7.987 -13.161 -2.387 1.882 1.029 C17 A1IC8 3 A1IC8 C16 C4 C 0 1 Y N N N N N -34.305 -10.871 -15.146 -4.445 -0.280 -0.405 C16 A1IC8 4 A1IC8 C15 C5 C 0 1 Y N N N N N -35.532 -12.700 -14.949 -6.451 0.252 -1.392 C15 A1IC8 5 A1IC8 C14 C6 C 0 1 Y N N N N N -34.087 -12.602 -16.776 -6.302 -1.817 -0.381 C14 A1IC8 6 A1IC8 C12 C7 C 0 1 Y N N N N N -32.823 -9.427 -15.854 -2.931 -1.445 0.697 C12 A1IC8 7 A1IC8 N5 N1 N 0 1 Y N N N N N -32.787 -10.397 -16.765 -4.001 -2.185 0.646 N5 A1IC8 8 A1IC8 C7 C8 C 0 1 N N S N N N -38.133 -3.733 -10.931 4.709 -2.353 0.795 C7 A1IC8 9 A1IC8 C8 C9 C 0 1 N N N N N N -38.514 -2.270 -11.171 5.257 -3.441 -0.092 C8 A1IC8 10 A1IC8 C9 C10 C 0 1 N N N N N N -35.057 -5.395 -14.308 1.240 1.112 1.110 C9 A1IC8 11 A1IC8 C10 C11 C 0 1 N N R N N N -35.016 -6.656 -13.463 -0.058 1.519 0.408 C10 A1IC8 12 A1IC8 C11 C12 C 0 1 N N R N N N -34.147 -8.781 -13.792 -2.195 0.837 -0.091 C11 A1IC8 13 A1IC8 C6 C13 C 0 1 N N N N N N -36.762 -4.100 -11.526 3.681 -1.530 0.016 C6 A1IC8 14 A1IC8 N4 N2 N 0 1 Y N N N N N -33.743 -9.663 -14.870 -3.156 -0.259 0.063 N4 A1IC8 15 A1IC8 C1 C14 C 0 1 N N N N N N -33.586 -1.075 -16.290 5.354 3.883 -0.523 C1 A1IC8 16 A1IC8 C2 C15 C 0 1 N N R N N N -35.036 -1.288 -15.949 4.367 2.933 -1.205 C2 A1IC8 17 A1IC8 N1 N3 N 0 1 N N N N N N -35.843 -0.964 -17.151 5.066 2.161 -2.241 N1 A1IC8 18 A1IC8 C3 C16 C 0 1 N N N N N N -35.338 -2.697 -15.458 3.779 1.977 -0.165 C3 A1IC8 19 A1IC8 C4 C17 C 0 1 N N N N N N -34.713 -2.990 -14.079 2.702 1.111 -0.820 C4 A1IC8 20 A1IC8 N2 N4 N 0 1 N N N N N N -35.271 -4.204 -13.485 2.048 0.285 0.203 N2 A1IC8 21 A1IC8 C5 C18 C 0 1 N N N N N N -36.656 -4.028 -13.052 3.034 -0.506 0.951 C5 A1IC8 22 A1IC8 N3 N5 N 0 1 N N N N N N -39.197 -4.609 -11.510 5.806 -1.480 1.234 N3 A1IC8 23 A1IC8 O1 O1 O 0 1 N N N N N N -39.405 -2.072 -12.015 6.331 -3.300 -0.628 O1 A1IC8 24 A1IC8 O2 O2 O 0 1 N N N N N N -37.835 -1.381 -10.601 4.553 -4.567 -0.287 O2 A1IC8 25 A1IC8 O3 O3 O 0 1 N N N N N N -34.993 -7.806 -14.340 -0.842 0.351 0.084 O3 A1IC8 26 A1IC8 N6 N6 N 0 1 N N N N N N -33.582 -13.153 -17.881 -6.878 -3.027 -0.034 N6 A1IC8 27 A1IC8 N7 N7 N 0 1 Y N N N N N -35.034 -13.277 -16.069 -6.992 -0.905 -1.058 N7 A1IC8 28 A1IC8 N8 N8 N 0 1 Y N N N N N -35.235 -11.511 -14.426 -5.212 0.570 -1.081 N8 A1IC8 29 A1IC8 O4 O4 O 0 1 N N N N N N -32.175 -8.724 -12.298 -3.168 2.983 0.559 O4 A1IC8 30 A1IC8 O5 O5 O 0 1 N N N N N N -34.119 -7.038 -11.204 -0.800 3.740 1.111 O5 A1IC8 31 A1IC8 H29 H1 H 0 1 N N N N N N -33.163 -5.893 -12.658 -0.709 2.114 2.402 H29 A1IC8 32 A1IC8 H27 H2 H 0 1 N N N N N N -32.395 -7.592 -13.985 -2.856 1.428 1.902 H27 A1IC8 33 A1IC8 H26 H3 H 0 1 N N N N N N -36.266 -13.280 -14.409 -7.048 0.965 -1.942 H26 A1IC8 34 A1IC8 H23 H4 H 0 1 N N N N N N -32.194 -8.549 -15.888 -2.004 -1.727 1.174 H23 A1IC8 35 A1IC8 H15 H5 H 0 1 N N N N N N -38.090 -3.903 -9.845 4.231 -2.802 1.666 H15 A1IC8 36 A1IC8 H19 H6 H 0 1 N N N N N N -35.878 -5.479 -15.035 1.801 2.005 1.384 H19 A1IC8 37 A1IC8 H20 H7 H 0 1 N N N N N N -34.102 -5.292 -14.843 1.003 0.542 2.008 H20 A1IC8 38 A1IC8 H21 H8 H 0 1 N N N N N N -35.914 -6.688 -12.829 0.161 2.092 -0.493 H21 A1IC8 39 A1IC8 H22 H9 H 0 1 N N N N N N -34.665 -9.353 -13.008 -2.308 1.304 -1.070 H22 A1IC8 40 A1IC8 H13 H10 H 0 1 N N N N N N -36.526 -5.130 -11.220 4.178 -1.010 -0.803 H13 A1IC8 41 A1IC8 H14 H11 H 0 1 N N N N N N -36.016 -3.412 -11.103 2.914 -2.192 -0.385 H14 A1IC8 42 A1IC8 H3 H12 H 0 1 N N N N N N -32.964 -1.309 -15.413 5.773 4.564 -1.264 H3 A1IC8 43 A1IC8 H1 H13 H 0 1 N N N N N N -33.305 -1.734 -17.125 4.836 4.456 0.245 H1 A1IC8 44 A1IC8 H2 H14 H 0 1 N N N N N N -33.428 -0.026 -16.582 6.157 3.305 -0.066 H2 A1IC8 45 A1IC8 H4 H15 H 0 1 N N N N N N -35.307 -0.584 -15.148 3.564 3.511 -1.662 H4 A1IC8 46 A1IC8 H31 H16 H 0 1 N N N N N N -36.813 -1.098 -16.948 4.451 1.481 -2.661 H31 A1IC8 47 A1IC8 H6 H17 H 0 1 N N N N N N -35.686 -0.011 -17.411 5.463 2.771 -2.940 H6 A1IC8 48 A1IC8 H7 H19 H 0 1 N N N N N N -36.429 -2.818 -15.384 4.570 1.338 0.228 H7 A1IC8 49 A1IC8 H8 H20 H 0 1 N N N N N N -34.938 -3.417 -16.187 3.338 2.552 0.649 H8 A1IC8 50 A1IC8 H9 H21 H 0 1 N N N N N N -33.627 -3.117 -14.198 1.961 1.752 -1.298 H9 A1IC8 51 A1IC8 H10 H22 H 0 1 N N N N N N -34.911 -2.140 -13.409 3.160 0.465 -1.569 H10 A1IC8 52 A1IC8 H11 H24 H 0 1 N N N N N N -37.018 -3.047 -13.393 2.538 -1.025 1.771 H11 A1IC8 53 A1IC8 H12 H25 H 0 1 N N N N N N -37.276 -4.822 -13.494 3.802 0.156 1.352 H12 A1IC8 54 A1IC8 H16 H26 H 0 1 N N N N N N -40.083 -4.362 -11.117 6.465 -1.987 1.805 H16 A1IC8 55 A1IC8 H17 H27 H 0 1 N N N N N N -39.227 -4.486 -12.502 6.265 -1.052 0.444 H17 A1IC8 56 A1IC8 H33 H29 H 0 1 N N N N N N -38.106 -0.526 -10.914 4.945 -5.236 -0.865 H33 A1IC8 57 A1IC8 H25 H30 H 0 1 N N N N N N -34.008 -14.045 -18.034 -6.364 -3.685 0.460 H25 A1IC8 58 A1IC8 H24 H31 H 0 1 N N N N N N -33.765 -12.558 -18.664 -7.795 -3.217 -0.286 H24 A1IC8 59 A1IC8 H28 H32 H 0 1 N N N N N N -31.497 -8.157 -11.951 -3.269 3.697 1.203 H28 A1IC8 60 A1IC8 H30 H33 H 0 1 N N N N N N -34.594 -6.290 -10.861 -1.360 4.302 1.663 H30 A1IC8 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IC8 C1 C2 SING N N 1 A1IC8 C2 N1 SING N N 2 A1IC8 C2 C3 SING N N 3 A1IC8 C3 C4 SING N N 4 A1IC8 C4 N2 SING N N 5 A1IC8 N2 C5 SING N N 6 A1IC8 C5 C6 SING N N 7 A1IC8 C6 C7 SING N N 8 A1IC8 C7 N3 SING N N 9 A1IC8 C7 C8 SING N N 10 A1IC8 C8 O1 DOUB N N 11 A1IC8 C8 O2 SING N N 12 A1IC8 N2 C9 SING N N 13 A1IC8 C9 C10 SING N N 14 A1IC8 C10 O3 SING N N 15 A1IC8 O3 C11 SING N N 16 A1IC8 C11 N4 SING N N 17 A1IC8 N4 C12 SING Y N 18 A1IC8 C12 N5 DOUB Y N 19 A1IC8 N5 C13 SING Y N 20 A1IC8 C13 C14 DOUB Y N 21 A1IC8 C14 N6 SING N N 22 A1IC8 C14 N7 SING Y N 23 A1IC8 N7 C15 DOUB Y N 24 A1IC8 C15 N8 SING Y N 25 A1IC8 N8 C16 DOUB Y N 26 A1IC8 C11 C17 SING N N 27 A1IC8 C17 O4 SING N N 28 A1IC8 C17 C18 SING N N 29 A1IC8 C18 O5 SING N N 30 A1IC8 C10 C18 SING N N 31 A1IC8 N4 C16 SING Y N 32 A1IC8 C13 C16 SING Y N 33 A1IC8 C18 H29 SING N N 34 A1IC8 C17 H27 SING N N 35 A1IC8 C15 H26 SING N N 36 A1IC8 C12 H23 SING N N 37 A1IC8 C7 H15 SING N N 38 A1IC8 C9 H19 SING N N 39 A1IC8 C9 H20 SING N N 40 A1IC8 C10 H21 SING N N 41 A1IC8 C11 H22 SING N N 42 A1IC8 C6 H13 SING N N 43 A1IC8 C6 H14 SING N N 44 A1IC8 C1 H3 SING N N 45 A1IC8 C1 H1 SING N N 46 A1IC8 C1 H2 SING N N 47 A1IC8 C2 H4 SING N N 48 A1IC8 N1 H31 SING N N 49 A1IC8 N1 H6 SING N N 50 A1IC8 C3 H7 SING N N 51 A1IC8 C3 H8 SING N N 52 A1IC8 C4 H9 SING N N 53 A1IC8 C4 H10 SING N N 54 A1IC8 C5 H11 SING N N 55 A1IC8 C5 H12 SING N N 56 A1IC8 N3 H16 SING N N 57 A1IC8 N3 H17 SING N N 58 A1IC8 O2 H33 SING N N 59 A1IC8 N6 H25 SING N N 60 A1IC8 N6 H24 SING N N 61 A1IC8 O4 H28 SING N N 62 A1IC8 O5 H30 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IC8 InChI InChI 1.06 "InChI=1S/C18H30N8O5/c1-9(19)2-4-25(5-3-10(20)18(29)30)6-11-13(27)14(28)17(31-11)26-8-24-12-15(21)22-7-23-16(12)26/h7-11,13-14,17,27-28H,2-6,19-20H2,1H3,(H,29,30)(H2,21,22,23)/t9-,10+,11-,13-,14-,17-/m1/s1" A1IC8 InChIKey InChI 1.06 JCTIKIALCXLLSR-QGGMLDPDSA-N A1IC8 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N)CCN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" A1IC8 SMILES CACTVS 3.385 "C[CH](N)CCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" A1IC8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCN(CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" A1IC8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1IC8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{R})-3-azanylbutyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IC8 "Create component" 2024-06-05 PDBE A1IC8 "Initial release" 2025-06-18 RCSB #