data_A1ICB # _chem_comp.id A1ICB _chem_comp.name "(2S,4S)-4-[(2-chloranyl-5-methyl-phenyl)carbonylamino]pyrrolidine-2-carboxylic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H15 Cl N2 O3" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-21 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.723 _chem_comp.one_letter_code P _chem_comp.three_letter_code A1ICB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FBI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ICB CG C1 C 0 1 N N S N N N -12.956 25.437 3.453 1.580 0.683 0.303 CG A1ICB 1 A1ICB CB C2 C 0 1 N N N N N N -13.773 26.670 2.747 2.718 -0.238 0.816 CB A1ICB 2 A1ICB CA C3 C 0 1 N N S N Y N -14.989 26.169 2.405 3.972 0.455 0.226 CA A1ICB 3 A1ICB C C4 C 0 1 N N N N Y Y -15.051 25.488 1.064 5.101 -0.533 0.087 C A1ICB 4 A1ICB C01 C5 C 0 1 N N N N N N -9.306 20.462 0.561 -3.302 -3.721 -0.176 C01 A1ICB 5 A1ICB C02 C6 C 0 1 Y N N N N N -9.825 21.804 0.028 -3.308 -2.216 -0.100 C02 A1ICB 6 A1ICB C03 C7 C 0 1 Y N N N N N -10.329 22.667 0.974 -2.117 -1.527 -0.003 C03 A1ICB 7 A1ICB C04 C8 C 0 1 Y N N N N N -10.797 23.915 0.605 -2.124 -0.133 0.068 C04 A1ICB 8 A1ICB C05 C9 C 0 1 Y N N N N N -10.848 24.303 -0.710 -3.340 0.556 0.039 C05 A1ICB 9 A1ICB C07 C10 C 0 1 Y N N N N N -10.385 23.409 -1.658 -4.525 -0.147 -0.058 C07 A1ICB 10 A1ICB C08 C11 C 0 1 Y N N N N N -9.882 22.159 -1.309 -4.509 -1.528 -0.133 C08 A1ICB 11 A1ICB C09 C12 C 0 1 N N N N N N -11.315 24.903 1.690 -0.852 0.612 0.172 C09 A1ICB 12 A1ICB CD C13 C 0 1 N N N N N N -13.879 24.718 4.189 2.080 1.107 -1.094 CD A1ICB 13 A1ICB N11 N1 N 0 1 N N N N N N -12.457 24.506 2.445 0.319 -0.055 0.199 N11 A1ICB 14 A1ICB N N2 N 0 1 N N N Y Y N -15.265 25.150 3.619 3.545 0.939 -1.104 N A1ICB 15 A1ICB O10 O1 O 0 1 N N N N N N -10.836 25.969 1.874 -0.861 1.826 0.233 O10 A1ICB 16 A1ICB O O2 O 0 1 N N N N Y Y -14.798 26.100 0.065 5.340 -1.030 -0.988 O A1ICB 17 A1ICB CL06 CL1 CL 0 0 N N N N N N -11.532 25.897 -1.241 -3.360 2.289 0.127 CL06 A1ICB 18 A1ICB HG2 H1 H 0 1 N N N N N N -12.141 25.847 4.068 1.465 1.551 0.951 HG2 A1ICB 19 A1ICB HB2 H2 H 0 1 N N N N N N -13.238 27.019 1.851 2.753 -0.246 1.905 HB2 A1ICB 20 A1ICB HB3 H3 H 0 1 N N N N N N -13.889 27.505 3.453 2.609 -1.249 0.423 HB3 A1ICB 21 A1ICB HA H4 H 0 1 N N N N Y N -15.762 26.950 2.444 4.274 1.292 0.856 HA A1ICB 22 A1ICB OXT OXT O 0 1 N Y N N Y Y -15.313 24.492 1.005 5.841 -0.861 1.158 OXT A1ICB 23 A1ICB H011 H6 H 0 0 N N N N N N -8.233 20.547 0.789 -3.354 -4.135 0.831 H011 A1ICB 24 A1ICB H013 H7 H 0 0 N N N N N N -9.855 20.194 1.476 -4.162 -4.059 -0.753 H013 A1ICB 25 A1ICB H012 H8 H 0 0 N N N N N N -9.458 19.682 -0.199 -2.385 -4.056 -0.660 H012 A1ICB 26 A1ICB H031 H9 H 0 0 N N N N N N -10.359 22.368 2.011 -1.181 -2.065 0.019 H031 A1ICB 27 A1ICB H071 H10 H 0 0 N N N N N N -10.415 23.689 -2.701 -5.465 0.383 -0.084 H071 A1ICB 28 A1ICB H081 H11 H 0 0 N N N N N N -9.540 21.475 -2.072 -5.438 -2.073 -0.209 H081 A1ICB 29 A1ICB HD3 H12 H 0 1 N N N N N N -13.725 23.637 4.055 1.629 0.474 -1.858 HD3 A1ICB 30 A1ICB HD2 H13 H 0 1 N N N N N N -13.804 24.969 5.257 1.823 2.150 -1.279 HD2 A1ICB 31 A1ICB H111 H14 H 0 0 N N N N N N -12.900 23.623 2.290 0.326 -1.024 0.150 H111 A1ICB 32 A1ICB H H15 H 0 1 N Y N Y Y N -15.801 25.604 4.331 4.006 1.805 -1.339 H A1ICB 33 A1ICB HXT HXT H 0 1 N Y N N Y Y -15.306 24.216 0.096 6.555 -1.499 1.019 H1 A1ICB 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ICB C07 C08 DOUB Y N 1 A1ICB C07 C05 SING Y N 2 A1ICB C08 C02 SING Y N 3 A1ICB CL06 C05 SING N N 4 A1ICB C05 C04 DOUB Y N 5 A1ICB C02 C01 SING N N 6 A1ICB C02 C03 DOUB Y N 7 A1ICB O C DOUB N N 8 A1ICB C04 C03 SING Y N 9 A1ICB C04 C09 SING N N 10 A1ICB C CA SING N N 11 A1ICB C09 O10 DOUB N N 12 A1ICB C09 N11 SING N N 13 A1ICB CA CB SING N N 14 A1ICB CA N SING N N 15 A1ICB N11 CG SING N N 16 A1ICB CB CG SING N N 17 A1ICB CG CD SING N N 18 A1ICB N CD SING N N 19 A1ICB CG HG2 SING N N 20 A1ICB CB HB2 SING N N 21 A1ICB CB HB3 SING N N 22 A1ICB CA HA SING N N 23 A1ICB C OXT SING N N 24 A1ICB C01 H011 SING N N 25 A1ICB C01 H013 SING N N 26 A1ICB C01 H012 SING N N 27 A1ICB C03 H031 SING N N 28 A1ICB C07 H071 SING N N 29 A1ICB C08 H081 SING N N 30 A1ICB CD HD3 SING N N 31 A1ICB CD HD2 SING N N 32 A1ICB N11 H111 SING N N 33 A1ICB N H SING N N 34 A1ICB OXT HXT SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ICB InChI InChI 1.06 "InChI=1S/C13H15ClN2O3/c1-7-2-3-10(14)9(4-7)12(17)16-8-5-11(13(18)19)15-6-8/h2-4,8,11,15H,5-6H2,1H3,(H,16,17)(H,18,19)/t8-,11-/m0/s1" A1ICB InChIKey InChI 1.06 CDPJCMBIFVJJSG-KWQFWETISA-N A1ICB SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(Cl)c(c1)C(=O)N[C@@H]2CN[C@@H](C2)C(O)=O" A1ICB SMILES CACTVS 3.385 "Cc1ccc(Cl)c(c1)C(=O)N[CH]2CN[CH](C2)C(O)=O" A1ICB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)C(=O)N[C@H]2C[C@H](NC2)C(=O)O)Cl" A1ICB SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)C(=O)NC2CC(NC2)C(=O)O)Cl" # _pdbx_chem_comp_identifier.comp_id A1ICB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},4~{S})-4-[(2-chloranyl-5-methyl-phenyl)carbonylamino]pyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ICB "Create component" 2024-05-21 PDBE A1ICB "Modify backbone" 2024-09-06 PDBE A1ICB "Modify PCM" 2024-09-27 PDBE A1ICB "Modify name" 2024-11-25 PDBE A1ICB "Initial release" 2025-06-11 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ICB _pdbx_chem_comp_pcm.modified_residue_id PRO _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #