data_A1ICK # _chem_comp.id A1ICK _chem_comp.name "(2~{S})-3-[3-[[4-[bis(fluoranyl)methyl]-3-cyano-6-[(3~{S})-3-(dimethylamino)pyrrolidin-1-yl]pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]-2-methyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 F2 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-03 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.581 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ICK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FHE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ICK N1 N1 N 0 1 N N N N N N -22.594 -29.459 12.245 -1.447 2.237 1.323 N1 A1ICK 1 A1ICK N3 N2 N 0 1 N N N N N N -22.219 -26.073 15.394 -0.946 -2.022 -0.558 N3 A1ICK 2 A1ICK C7 C1 C 0 1 Y N N N N N -23.208 -28.390 12.865 -1.995 1.187 0.604 C7 A1ICK 3 A1ICK C8 C2 C 0 1 N N N N N N -24.828 -25.128 14.923 -3.589 -1.996 -1.548 C8 A1ICK 4 A1ICK C10 C3 C 0 1 N N N N N N -26.568 -26.631 13.135 -5.269 0.320 -1.072 C10 A1ICK 5 A1ICK C13 C4 C 0 1 Y N N N N N -25.115 -26.990 13.321 -3.852 0.245 -0.565 C13 A1ICK 6 A1ICK C15 C5 C 0 1 N N N N N N -19.552 -32.282 12.845 2.044 5.480 1.345 C15 A1ICK 7 A1ICK C17 C6 C 0 1 N N N N N N -21.163 -29.748 12.361 0.031 2.263 1.184 C17 A1ICK 8 A1ICK C20 C7 C 0 1 N N S N N N -20.936 -30.787 11.273 0.398 3.718 1.569 C20 A1ICK 9 A1ICK C21 C8 C 0 1 Y N N N N N -20.913 -26.189 15.924 0.343 -2.084 -0.015 C21 A1ICK 10 A1ICK C22 C9 C 0 1 Y N N N N N -20.572 -25.374 17.014 0.701 -3.142 0.821 C22 A1ICK 11 A1ICK C24 C10 C 0 1 Y N N N N N -18.393 -26.381 17.071 2.896 -2.204 1.059 C24 A1ICK 12 A1ICK C26 C11 C 0 1 Y N N N N N -19.972 -27.094 15.426 1.270 -1.096 -0.312 C26 A1ICK 13 A1ICK C28 C12 C 0 1 N N N N N N -22.444 -25.232 19.072 0.465 -5.512 2.290 C28 A1ICK 14 A1ICK C11 C13 C 0 1 Y N N N N N -24.548 -28.060 12.634 -3.308 1.281 0.146 C11 A1ICK 15 A1ICK C12 C14 C 0 1 Y N N N N N -24.314 -26.270 14.218 -3.062 -0.888 -0.809 C12 A1ICK 16 A1ICK C14 C15 C 0 1 N N N N N N -23.281 -30.424 11.375 -1.924 3.539 0.806 C14 A1ICK 17 A1ICK C16 C16 C 0 1 N N N N N N -18.437 -30.990 11.087 1.641 3.958 -0.495 C16 A1ICK 18 A1ICK C18 C17 C 0 1 N N N N N N -22.264 -31.544 11.207 -0.764 4.539 0.965 C18 A1ICK 19 A1ICK C23 C18 C 0 1 Y N N N N N -19.306 -25.478 17.578 1.981 -3.197 1.355 C23 A1ICK 20 A1ICK C25 C19 C 0 1 Y N N N N N -18.703 -27.201 15.997 2.543 -1.159 0.225 C25 A1ICK 21 A1ICK C29 C20 C 0 1 N N N N N N -17.752 -28.312 15.610 3.547 -0.080 -0.093 C29 A1ICK 22 A1ICK C30 C21 C 0 1 N N S N N N -17.652 -28.672 14.103 4.465 -0.555 -1.222 C30 A1ICK 23 A1ICK C31 C22 C 0 1 N N N N N N -17.216 -27.524 13.196 5.467 0.524 -1.541 C31 A1ICK 24 A1ICK C32 C23 C 0 1 N N N N N N -16.578 -29.736 13.880 5.201 -1.821 -0.781 C32 A1ICK 25 A1ICK C9 C24 C 0 1 Y N N N N N -22.965 -26.665 14.414 -1.744 -0.916 -0.323 C9 A1ICK 26 A1ICK F5 F1 F 0 1 N N N N N N -26.690 -25.395 12.586 -6.144 0.473 0.009 F5 A1ICK 27 A1ICK F6 F2 F 0 1 N N N N N N -27.214 -26.600 14.333 -5.398 1.413 -1.935 F6 A1ICK 28 A1ICK N19 N3 N 0 1 N N N N N N -19.705 -31.670 11.480 1.679 4.108 0.966 N19 A1ICK 29 A1ICK N2 N4 N 0 1 N N N N N N -25.282 -24.236 15.475 -4.007 -2.875 -2.133 N2 A1ICK 30 A1ICK N4 N5 N 0 1 Y N N N N N -22.456 -27.696 13.729 -1.262 0.111 0.360 N4 A1ICK 31 A1ICK O33 O1 O 0 1 N N N N N N -16.251 -26.822 13.579 5.429 1.578 -0.951 O33 A1ICK 32 A1ICK O34 O2 O 0 1 N N N N N N -17.821 -27.395 12.100 6.402 0.314 -2.481 O34 A1ICK 33 A1ICK S27 S1 S 0 1 N N N N N N -21.786 -24.290 17.701 -0.468 -4.405 1.198 S27 A1ICK 34 A1ICK H3 H1 H 0 1 N N N N N N -22.740 -25.362 15.866 -1.280 -2.755 -1.098 H3 A1ICK 35 A1ICK H10 H2 H 0 1 N N N N N N -27.025 -27.385 12.478 -5.512 -0.597 -1.609 H10 A1ICK 36 A1ICK H15C H3 H 0 0 N N N N N N -20.489 -32.782 13.130 2.048 5.568 2.431 H15C A1ICK 37 A1ICK H15A H4 H 0 0 N N N N N N -18.735 -33.018 12.827 3.036 5.712 0.958 H15A A1ICK 38 A1ICK H15B H5 H 0 0 N N N N N N -19.320 -31.494 13.576 1.318 6.177 0.927 H15B A1ICK 39 A1ICK H17A H6 H 0 0 N N N N N N -20.561 -28.846 12.178 0.494 1.555 1.871 H17A A1ICK 40 A1ICK H17B H7 H 0 0 N N N N N N -20.921 -30.155 13.354 0.325 2.051 0.156 H17B A1ICK 41 A1ICK H20 H8 H 0 1 N N N N N N -20.808 -30.253 10.320 0.433 3.833 2.653 H20 A1ICK 42 A1ICK H24 H9 H 0 1 N N N N N N -17.414 -26.450 17.522 3.892 -2.248 1.475 H24 A1ICK 43 A1ICK H26 H10 H 0 1 N N N N N N -20.231 -27.721 14.586 0.999 -0.278 -0.962 H26 A1ICK 44 A1ICK H28A H11 H 0 0 N N N N N N -23.222 -24.644 19.582 0.788 -4.963 3.174 H28A A1ICK 45 A1ICK H28B H12 H 0 0 N N N N N N -22.880 -26.170 18.697 -0.170 -6.345 2.592 H28B A1ICK 46 A1ICK H28C H13 H 0 0 N N N N N N -21.635 -25.462 19.781 1.338 -5.894 1.761 H28C A1ICK 47 A1ICK H11 H14 H 0 1 N N N N N N -25.136 -28.630 11.930 -3.893 2.166 0.350 H11 A1ICK 48 A1ICK H14A H15 H 0 0 N N N N N N -24.200 -30.797 11.851 -2.192 3.445 -0.246 H14A A1ICK 49 A1ICK H14B H16 H 0 0 N N N N N N -23.529 -29.970 10.404 -2.785 3.875 1.383 H14B A1ICK 50 A1ICK H16B H17 H 0 0 N N N N N N -18.554 -30.544 10.088 2.652 4.034 -0.895 H16B A1ICK 51 A1ICK H16C H18 H 0 0 N N N N N N -18.203 -30.200 11.816 1.221 2.985 -0.749 H16C A1ICK 52 A1ICK H16A H19 H 0 0 N N N N N N -17.618 -31.724 11.067 1.020 4.745 -0.924 H16A A1ICK 53 A1ICK H18A H20 H 0 0 N N N N N N -22.344 -32.281 12.020 -1.049 5.345 1.640 H18A A1ICK 54 A1ICK H18B H21 H 0 0 N N N N N N -22.386 -32.052 10.239 -0.477 4.942 -0.007 H18B A1ICK 55 A1ICK H23 H22 H 0 1 N N N N N N -19.036 -24.851 18.415 2.261 -4.014 2.003 H23 A1ICK 56 A1ICK H29A H23 H 0 0 N N N N N N -16.747 -28.019 15.947 3.023 0.822 -0.407 H29A A1ICK 57 A1ICK H29B H24 H 0 0 N N N N N N -18.068 -29.219 16.146 4.142 0.135 0.794 H29B A1ICK 58 A1ICK H30 H25 H 0 1 N N N N N N -18.624 -29.058 13.761 3.869 -0.771 -2.108 H30 A1ICK 59 A1ICK H32C H26 H 0 0 N N N N N N -16.520 -29.980 12.809 5.855 -2.160 -1.584 H32C A1ICK 60 A1ICK H32A H27 H 0 0 N N N N N N -15.605 -29.353 14.222 5.797 -1.605 0.106 H32A A1ICK 61 A1ICK H32B H28 H 0 0 N N N N N N -16.836 -30.642 14.449 4.476 -2.602 -0.549 H32B A1ICK 62 A1ICK H1 H30 H 0 1 N N N N N N -17.433 -26.682 11.606 6.993 1.052 -2.685 H1 A1ICK 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ICK N1 C7 SING N N 1 A1ICK N1 C14 SING N N 2 A1ICK N1 C17 SING N N 3 A1ICK N2 C8 TRIP N N 4 A1ICK N3 C9 SING N N 5 A1ICK N3 C21 SING N N 6 A1ICK N4 C7 DOUB Y N 7 A1ICK N4 C9 SING Y N 8 A1ICK F5 C10 SING N N 9 A1ICK F6 C10 SING N N 10 A1ICK C7 C11 SING Y N 11 A1ICK C8 C12 SING N N 12 A1ICK C9 C12 DOUB Y N 13 A1ICK C10 C13 SING N N 14 A1ICK C11 C13 DOUB Y N 15 A1ICK C12 C13 SING Y N 16 A1ICK C14 C18 SING N N 17 A1ICK C15 N19 SING N N 18 A1ICK C16 N19 SING N N 19 A1ICK C17 C20 SING N N 20 A1ICK C18 C20 SING N N 21 A1ICK C20 N19 SING N N 22 A1ICK C21 C22 DOUB Y N 23 A1ICK C21 C26 SING Y N 24 A1ICK C22 C23 SING Y N 25 A1ICK C22 S27 SING N N 26 A1ICK C23 C24 DOUB Y N 27 A1ICK C24 C25 SING Y N 28 A1ICK C25 C26 DOUB Y N 29 A1ICK C25 C29 SING N N 30 A1ICK S27 C28 SING N N 31 A1ICK C29 C30 SING N N 32 A1ICK C30 C31 SING N N 33 A1ICK C30 C32 SING N N 34 A1ICK C31 O33 DOUB N N 35 A1ICK C31 O34 SING N N 36 A1ICK N3 H3 SING N N 37 A1ICK C10 H10 SING N N 38 A1ICK C15 H15C SING N N 39 A1ICK C15 H15A SING N N 40 A1ICK C15 H15B SING N N 41 A1ICK C17 H17A SING N N 42 A1ICK C17 H17B SING N N 43 A1ICK C20 H20 SING N N 44 A1ICK C24 H24 SING N N 45 A1ICK C26 H26 SING N N 46 A1ICK C28 H28A SING N N 47 A1ICK C28 H28B SING N N 48 A1ICK C28 H28C SING N N 49 A1ICK C11 H11 SING N N 50 A1ICK C14 H14A SING N N 51 A1ICK C14 H14B SING N N 52 A1ICK C16 H16B SING N N 53 A1ICK C16 H16C SING N N 54 A1ICK C16 H16A SING N N 55 A1ICK C18 H18A SING N N 56 A1ICK C18 H18B SING N N 57 A1ICK C23 H23 SING N N 58 A1ICK C29 H29A SING N N 59 A1ICK C29 H29B SING N N 60 A1ICK C30 H30 SING N N 61 A1ICK C32 H32C SING N N 62 A1ICK C32 H32A SING N N 63 A1ICK C32 H32B SING N N 64 A1ICK O34 H1 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ICK InChI InChI 1.06 "InChI=1S/C24H29F2N5O2S/c1-14(24(32)33)9-15-5-6-20(34-4)19(10-15)28-23-18(12-27)17(22(25)26)11-21(29-23)31-8-7-16(13-31)30(2)3/h5-6,10-11,14,16,22H,7-9,13H2,1-4H3,(H,28,29)(H,32,33)/t14-,16-/m0/s1" A1ICK InChIKey InChI 1.06 LPDOIXPRZOWBJV-HOCLYGCPSA-N A1ICK SMILES_CANONICAL CACTVS 3.385 "CSc1ccc(C[C@H](C)C(O)=O)cc1Nc2nc(cc(C(F)F)c2C#N)N3CC[C@@H](C3)N(C)C" A1ICK SMILES CACTVS 3.385 "CSc1ccc(C[CH](C)C(O)=O)cc1Nc2nc(cc(C(F)F)c2C#N)N3CC[CH](C3)N(C)C" A1ICK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](Cc1ccc(c(c1)Nc2c(c(cc(n2)N3CC[C@@H](C3)N(C)C)C(F)F)C#N)SC)C(=O)O" A1ICK SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cc1ccc(c(c1)Nc2c(c(cc(n2)N3CCC(C3)N(C)C)C(F)F)C#N)SC)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1ICK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3-[3-[[4-[bis(fluoranyl)methyl]-3-cyano-6-[(3~{S})-3-(dimethylamino)pyrrolidin-1-yl]pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]-2-methyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ICK "Create component" 2024-06-03 PDBE A1ICK "Initial release" 2024-09-04 RCSB #