data_A1ICO # _chem_comp.id A1ICO _chem_comp.name "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyridin-4-yl-1,3-thiazol-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H37 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-03 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 623.768 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ICO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FIV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ICO C10 C1 C 0 1 Y N N N N N -67.562 3.858 92.308 0.417 4.873 -0.204 C10 A1ICO 1 A1ICO C15 C2 C 0 1 N N N N N N -68.244 6.221 88.238 -3.777 1.917 2.348 C15 A1ICO 2 A1ICO C21 C3 C 0 1 Y N N N N N -76.195 7.389 87.965 -7.041 -3.781 -2.367 C21 A1ICO 3 A1ICO C28 C4 C 0 1 N N N N N N -70.627 5.611 87.546 -5.700 0.776 1.234 C28 A1ICO 4 A1ICO C01 C5 C 0 1 Y N N N N N -67.557 11.270 100.954 9.146 -1.067 0.619 C01 A1ICO 5 A1ICO C02 C6 C 0 1 Y N N N N N -67.044 12.272 101.788 10.296 -1.535 1.218 C02 A1ICO 6 A1ICO C04 C7 C 0 1 Y N N N N N -64.774 11.381 101.478 9.581 -3.725 1.058 C04 A1ICO 7 A1ICO C05 C8 C 0 1 Y N N N N N -65.299 10.392 100.662 8.397 -3.344 0.463 C05 A1ICO 8 A1ICO C07 C9 C 0 1 Y N N N N N -70.254 3.624 91.543 -1.421 4.336 -2.199 C07 A1ICO 9 A1ICO C08 C10 C 0 1 Y N N N N N -69.334 2.693 91.113 -1.342 5.605 -1.656 C08 A1ICO 10 A1ICO C09 C11 C 0 1 Y N N N N N -68.004 2.824 91.497 -0.427 5.872 -0.654 C09 A1ICO 11 A1ICO C11 C12 C 0 1 Y N N N N N -68.483 4.794 92.741 0.345 3.608 -0.756 C11 A1ICO 12 A1ICO C12 C13 C 0 1 N N N N N N -68.420 8.327 94.898 2.239 -0.201 -0.470 C12 A1ICO 13 A1ICO C14 C14 C 0 1 N N N N N N -67.438 7.275 89.012 -2.355 1.728 2.886 C14 A1ICO 14 A1ICO C18 C15 C 0 1 N N N N N N -72.972 5.899 88.204 -5.975 -0.732 -0.663 C18 A1ICO 15 A1ICO C19 C16 C 0 1 N N N N N N -75.765 9.071 86.025 -8.130 -5.131 -0.547 C19 A1ICO 16 A1ICO C23 C17 C 0 1 Y N N N N N -74.143 6.561 88.003 -6.450 -1.958 -1.186 C23 A1ICO 17 A1ICO C29 C18 C 0 1 N N N N N N -69.752 6.634 88.221 -4.267 0.601 1.741 C29 A1ICO 18 A1ICO C30 C19 C 0 1 N N N N N N -70.340 6.810 89.633 -3.359 0.206 0.574 C30 A1ICO 19 A1ICO C31 C20 C 0 1 N N N N N N -69.502 7.841 90.368 -1.932 -0.003 1.091 C31 A1ICO 20 A1ICO C34 C21 C 0 1 N N N N N N -67.360 7.084 91.459 -0.358 1.833 1.473 C34 A1ICO 21 A1ICO C36 C22 C 0 1 N N R N N N -68.029 5.839 93.545 1.269 2.521 -0.270 C36 A1ICO 22 A1ICO C37 C23 C 0 1 N N N N N N -68.860 5.953 94.851 2.125 2.019 -1.435 C37 A1ICO 23 A1ICO C39 C24 C 0 1 N N N N N N -69.104 7.203 96.923 3.944 0.534 -2.023 C39 A1ICO 24 A1ICO C40 C25 C 0 1 Y N N N N N -66.588 8.164 99.441 5.901 -2.318 -0.837 C40 A1ICO 25 A1ICO C42 C26 C 0 1 Y N N N N N -68.275 7.930 97.959 4.992 -0.379 -1.441 C42 A1ICO 26 A1ICO N20 N1 N 0 1 Y N N N N N -75.471 8.011 87.023 -7.435 -3.950 -1.066 N20 A1ICO 27 A1ICO O17 O1 O 0 1 N N N N N N -72.810 5.029 89.056 -5.400 0.073 -1.375 O17 A1ICO 28 A1ICO C22 C27 C 0 1 Y N N N N N -75.372 6.507 88.556 -6.432 -2.589 -2.502 C22 A1ICO 29 A1ICO C24 C28 C 0 1 Y N N N N N -74.241 7.499 87.047 -7.086 -2.861 -0.324 C24 A1ICO 30 A1ICO N25 N2 N 0 1 N N N N N N -73.207 7.826 86.294 -7.238 -2.532 0.969 N25 A1ICO 31 A1ICO C26 C29 C 0 1 N N N N N N -72.067 7.180 86.484 -6.799 -1.397 1.435 C26 A1ICO 32 A1ICO N27 N3 N 0 1 N N N N N N -71.942 6.209 87.425 -6.170 -0.483 0.652 N27 A1ICO 33 A1ICO O16 O2 O 0 1 N N N N N N -69.790 7.866 87.525 -4.236 -0.424 2.736 O16 A1ICO 34 A1ICO N32 N4 N 0 1 N N N N N N -68.052 7.427 90.349 -1.506 1.209 1.805 N32 A1ICO 35 A1ICO O33 O3 O 0 1 N N N N N N -66.200 6.720 91.470 0.031 2.776 2.129 O33 A1ICO 36 A1ICO C35 C30 C 0 1 N N R N N N -68.104 7.162 92.786 0.442 1.359 0.288 C35 A1ICO 37 A1ICO C06 C31 C 0 1 Y N N N N N -69.828 4.673 92.351 -0.574 3.339 -1.753 C06 A1ICO 38 A1ICO C13 C32 C 0 1 N N N N N N -67.552 8.281 93.616 1.386 0.235 0.724 C13 A1ICO 39 A1ICO N38 N5 N 0 1 N N N N N N -68.333 7.061 95.677 3.011 0.945 -0.966 N38 A1ICO 40 A1ICO S43 S1 S 0 1 Y N N N N N -68.544 9.461 98.508 6.481 0.141 -0.780 S43 A1ICO 41 A1ICO N41 N6 N 0 1 Y N N N N N -67.201 7.389 98.535 4.896 -1.665 -1.375 N41 A1ICO 42 A1ICO C44 C33 C 0 1 Y N N N N N -67.164 9.355 99.584 6.915 -1.529 -0.419 C44 A1ICO 43 A1ICO C45 C34 C 0 1 Y N N N N N -66.693 10.314 100.401 8.163 -1.984 0.226 C45 A1ICO 44 A1ICO N03 N7 N 0 1 Y N N N N N -65.658 12.324 102.049 10.479 -2.827 1.417 N03 A1ICO 45 A1ICO H10 H1 H 0 1 N N N N N N -66.523 3.931 92.595 1.134 5.083 0.575 H10 A1ICO 46 A1ICO H18 H2 H 0 1 N N N N N N -68.136 5.243 88.729 -4.438 2.210 3.164 H18 A1ICO 47 A1ICO H19 H3 H 0 1 N N N N N N -67.869 6.157 87.206 -3.776 2.694 1.584 H19 A1ICO 48 A1ICO H21 H4 H 0 1 N N N N N N -77.234 7.563 88.202 -7.192 -4.497 -3.161 H21 A1ICO 49 A1ICO H28 H5 H 0 1 N N N N N N -70.680 4.696 88.154 -6.348 1.057 2.065 H28 A1ICO 50 A1ICO H29 H6 H 0 1 N N N N N N -70.228 5.367 86.551 -5.724 1.558 0.475 H29 A1ICO 51 A1ICO H01 H7 H 0 1 N N N N N N -68.615 11.234 100.738 9.004 -0.008 0.458 H01 A1ICO 52 A1ICO H02 H8 H 0 1 N N N N N N -67.707 13.002 102.229 11.058 -0.835 1.528 H02 A1ICO 53 A1ICO H04 H9 H 0 1 N N N N N N -63.713 11.430 101.673 9.772 -4.772 1.241 H04 A1ICO 54 A1ICO H05 H10 H 0 1 N N N N N N -64.635 9.666 100.216 7.667 -4.084 0.172 H05 A1ICO 55 A1ICO H07 H11 H 0 1 N N N N N N -71.292 3.540 91.257 -2.139 4.126 -2.978 H07 A1ICO 56 A1ICO H08 H12 H 0 1 N N N N N N -69.642 1.871 90.485 -2.001 6.385 -2.007 H08 A1ICO 57 A1ICO H09 H13 H 0 1 N N N N N N -67.289 2.093 91.151 -0.372 6.860 -0.223 H09 A1ICO 58 A1ICO H12 H14 H 0 1 N N N N N N -68.075 9.158 95.531 2.922 -0.992 -0.159 H12 A1ICO 59 A1ICO H13 H15 H 0 1 N N N N N N -69.468 8.496 94.611 1.590 -0.573 -1.263 H13 A1ICO 60 A1ICO H16 H16 H 0 1 N N N N N N -66.394 6.945 89.116 -1.964 2.685 3.230 H16 A1ICO 61 A1ICO H17 H17 H 0 1 N N N N N N -67.467 8.235 88.476 -2.368 1.018 3.713 H17 A1ICO 62 A1ICO H2C H18 H 0 1 N N N N N N -76.812 9.391 86.127 -9.207 -4.986 -0.635 H2C A1ICO 63 A1ICO H2A H19 H 0 1 N N N N N N -75.101 9.931 86.197 -7.834 -6.009 -1.121 H2A A1ICO 64 A1ICO H2B H20 H 0 1 N N N N N N -75.600 8.676 85.012 -7.868 -5.276 0.501 H2B A1ICO 65 A1ICO H30 H21 H 0 1 N N N N N N -71.381 7.158 89.563 -3.722 -0.719 0.127 H30 A1ICO 66 A1ICO H31 H22 H 0 1 N N N N N N -70.309 5.852 90.172 -3.362 0.998 -0.174 H31 A1ICO 67 A1ICO H33 H23 H 0 1 N N N N N N -69.609 8.818 89.874 -1.911 -0.854 1.772 H33 A1ICO 68 A1ICO H32 H24 H 0 1 N N N N N N -69.847 7.917 91.410 -1.263 -0.190 0.252 H32 A1ICO 69 A1ICO H36 H25 H 0 1 N N N N N N -66.980 5.666 93.828 1.916 2.916 0.513 H36 A1ICO 70 A1ICO H38 H26 H 0 1 N N N N N N -69.912 6.152 94.600 1.477 1.637 -2.223 H38 A1ICO 71 A1ICO H37 H27 H 0 1 N N N N N N -68.789 5.011 95.414 2.726 2.841 -1.825 H37 A1ICO 72 A1ICO H39 H28 H 0 1 N N N N N N -70.021 7.776 96.722 4.425 1.416 -2.447 H39 A1ICO 73 A1ICO H4A H29 H 0 1 N N N N N N -69.371 6.206 97.303 3.398 0.007 -2.806 H4A A1ICO 74 A1ICO H40 H30 H 0 1 N N N N N N -65.716 7.854 99.998 5.913 -3.393 -0.733 H40 A1ICO 75 A1ICO H22 H31 H 0 1 N N N N N N -75.655 5.846 89.362 -6.011 -2.180 -3.409 H22 A1ICO 76 A1ICO H26 H32 H 0 1 N N N N N N -71.213 7.432 85.873 -6.943 -1.174 2.482 H26 A1ICO 77 A1ICO H41 H33 H 0 1 N N N N N N -69.233 8.497 87.966 -4.536 -1.288 2.421 H41 A1ICO 78 A1ICO H35 H34 H 0 1 N N N N N N -69.162 7.375 92.574 -0.233 0.990 -0.484 H35 A1ICO 79 A1ICO H06 H35 H 0 1 N N N N N N -70.545 5.409 92.685 -0.636 2.348 -2.177 H06 A1ICO 80 A1ICO H14 H36 H 0 1 N N N N N N -66.501 8.084 93.873 0.801 -0.613 1.082 H14 A1ICO 81 A1ICO H15 H37 H 0 1 N N N N N N -67.624 9.234 93.071 2.035 0.593 1.523 H15 A1ICO 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ICO C19 N20 SING N N 1 A1ICO N25 C26 DOUB N N 2 A1ICO N25 C24 SING N N 3 A1ICO C26 N27 SING N N 4 A1ICO N20 C24 SING Y N 5 A1ICO N20 C21 SING Y N 6 A1ICO C24 C23 DOUB Y N 7 A1ICO N27 C28 SING N N 8 A1ICO N27 C18 SING N N 9 A1ICO O16 C29 SING N N 10 A1ICO C28 C29 SING N N 11 A1ICO C21 C22 DOUB Y N 12 A1ICO C23 C18 SING N N 13 A1ICO C23 C22 SING Y N 14 A1ICO C18 O17 DOUB N N 15 A1ICO C29 C15 SING N N 16 A1ICO C29 C30 SING N N 17 A1ICO C15 C14 SING N N 18 A1ICO C14 N32 SING N N 19 A1ICO C30 C31 SING N N 20 A1ICO N32 C31 SING N N 21 A1ICO N32 C34 SING N N 22 A1ICO C08 C09 DOUB Y N 23 A1ICO C08 C07 SING Y N 24 A1ICO C34 O33 DOUB N N 25 A1ICO C34 C35 SING N N 26 A1ICO C09 C10 SING Y N 27 A1ICO C07 C06 DOUB Y N 28 A1ICO C10 C11 DOUB Y N 29 A1ICO C06 C11 SING Y N 30 A1ICO C11 C36 SING N N 31 A1ICO C35 C36 SING N N 32 A1ICO C35 C13 SING N N 33 A1ICO C36 C37 SING N N 34 A1ICO C13 C12 SING N N 35 A1ICO C37 N38 SING N N 36 A1ICO C12 N38 SING N N 37 A1ICO N38 C39 SING N N 38 A1ICO C39 C42 SING N N 39 A1ICO C42 S43 SING Y N 40 A1ICO C42 N41 DOUB Y N 41 A1ICO S43 C44 SING Y N 42 A1ICO N41 C40 SING Y N 43 A1ICO C40 C44 DOUB Y N 44 A1ICO C44 C45 SING N N 45 A1ICO C45 C05 DOUB Y N 46 A1ICO C45 C01 SING Y N 47 A1ICO C05 C04 SING Y N 48 A1ICO C01 C02 DOUB Y N 49 A1ICO C04 N03 DOUB Y N 50 A1ICO C02 N03 SING Y N 51 A1ICO C10 H10 SING N N 52 A1ICO C15 H18 SING N N 53 A1ICO C15 H19 SING N N 54 A1ICO C21 H21 SING N N 55 A1ICO C28 H28 SING N N 56 A1ICO C28 H29 SING N N 57 A1ICO C01 H01 SING N N 58 A1ICO C02 H02 SING N N 59 A1ICO C04 H04 SING N N 60 A1ICO C05 H05 SING N N 61 A1ICO C07 H07 SING N N 62 A1ICO C08 H08 SING N N 63 A1ICO C09 H09 SING N N 64 A1ICO C12 H12 SING N N 65 A1ICO C12 H13 SING N N 66 A1ICO C14 H16 SING N N 67 A1ICO C14 H17 SING N N 68 A1ICO C19 H2C SING N N 69 A1ICO C19 H2A SING N N 70 A1ICO C19 H2B SING N N 71 A1ICO C30 H30 SING N N 72 A1ICO C30 H31 SING N N 73 A1ICO C31 H33 SING N N 74 A1ICO C31 H32 SING N N 75 A1ICO C36 H36 SING N N 76 A1ICO C37 H38 SING N N 77 A1ICO C37 H37 SING N N 78 A1ICO C39 H39 SING N N 79 A1ICO C39 H4A SING N N 80 A1ICO C40 H40 SING N N 81 A1ICO C22 H22 SING N N 82 A1ICO C26 H26 SING N N 83 A1ICO O16 H41 SING N N 84 A1ICO C35 H35 SING N N 85 A1ICO C06 H06 SING N N 86 A1ICO C13 H14 SING N N 87 A1ICO C13 H15 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ICO InChI InChI 1.06 "InChI=1S/C34H37N7O3S/c1-38-15-9-27-31(38)37-23-41(33(27)43)22-34(44)11-17-40(18-12-34)32(42)26-10-16-39(20-28(26)24-5-3-2-4-6-24)21-30-36-19-29(45-30)25-7-13-35-14-8-25/h2-9,13-15,19,23,26,28,44H,10-12,16-18,20-22H2,1H3/t26-,28+/m1/s1" A1ICO InChIKey InChI 1.06 RRXAAUXUWASHNO-IAPPQJPRSA-N A1ICO SMILES_CANONICAL CACTVS 3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6sc(cn6)c7ccncc7)C=Nc12" A1ICO SMILES CACTVS 3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[CH]4CCN(C[CH]4c5ccccc5)Cc6sc(cn6)c7ccncc7)C=Nc12" A1ICO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6ncc(s6)c7ccncc7)O" A1ICO SMILES "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)C4CCN(CC4c5ccccc5)Cc6ncc(s6)c7ccncc7)O" # _pdbx_chem_comp_identifier.comp_id A1ICO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyridin-4-yl-1,3-thiazol-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ICO "Create component" 2024-06-03 PDBE A1ICO "Other modification" 2024-06-28 PDBE A1ICO "Initial release" 2024-11-06 RCSB #