data_A1ICP # _chem_comp.id A1ICP _chem_comp.name "~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-6-oxidanylidene-pyrimidin-5-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H34 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-03 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ICP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FHQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ICP N1 N1 N 0 1 N N N N N N 29.792 -2.927 18.698 0.940 -1.653 0.164 N1 A1ICP 1 A1ICP N3 N2 N 0 1 N N N N N N 29.808 -0.816 15.730 4.559 -1.091 0.308 N3 A1ICP 2 A1ICP C4 C1 C 0 1 N N N N N N 29.380 -1.963 17.775 2.151 -1.142 -0.143 C4 A1ICP 3 A1ICP C5 C2 C 0 1 N N N N N N 30.636 -0.033 15.030 4.802 0.232 0.401 C5 A1ICP 4 A1ICP C6 C3 C 0 1 N N N N N N 30.442 2.004 13.646 6.241 2.135 0.347 C6 A1ICP 5 A1ICP C7 C4 C 0 1 N N N N N N 31.076 2.913 14.680 5.814 2.596 1.742 C7 A1ICP 6 A1ICP C8 C5 C 0 1 N N N N N N 31.444 1.499 12.643 7.717 2.476 0.127 C8 A1ICP 7 A1ICP C10 C6 C 0 1 N N S N N N 28.949 -3.170 19.865 -0.248 -1.218 -0.575 C10 A1ICP 8 A1ICP C13 C7 C 0 1 N N N N N N 28.892 -5.682 19.725 0.068 -2.972 -2.326 C13 A1ICP 9 A1ICP C15 C8 C 0 1 N N N N N N 26.847 0.520 22.033 -4.297 1.422 0.088 C15 A1ICP 10 A1ICP C17 C9 C 0 1 N N N N N N 27.793 -0.363 25.043 -5.125 -0.029 2.534 C17 A1ICP 11 A1ICP C20 C10 C 0 1 N N S N N N 27.408 1.261 20.805 -3.480 2.594 -0.460 C20 A1ICP 12 A1ICP C21 C11 C 0 1 N N N N N N 26.384 2.284 20.349 -2.509 2.115 -1.516 C21 A1ICP 13 A1ICP C22 C12 C 0 1 N N N N N N 28.412 3.476 20.459 -4.274 3.090 -2.668 C22 A1ICP 14 A1ICP C1 C13 C 0 1 N N N N N N 31.033 -3.575 18.589 0.825 -2.569 1.147 C1 A1ICP 15 A1ICP N2 N3 N 0 1 N N N N N N 31.804 -3.342 17.565 1.863 -2.983 1.822 N2 A1ICP 16 A1ICP C2 C14 C 0 1 N N N N N N 31.426 -2.427 16.630 3.090 -2.519 1.571 C2 A1ICP 17 A1ICP C3 C15 C 0 1 N N N N N N 30.212 -1.751 16.690 3.279 -1.590 0.588 C3 A1ICP 18 A1ICP O1 O1 O 0 1 N N N N N N 29.891 0.808 14.319 6.054 0.700 0.233 O1 A1ICP 19 A1ICP O2 O2 O 0 1 N N N N N N 28.307 -1.408 17.966 2.272 -0.313 -1.030 O2 A1ICP 20 A1ICP O3 O3 O 0 1 N N N N N N 31.840 -0.101 15.074 3.892 1.002 0.637 O3 A1ICP 21 A1ICP C9 C16 C 0 1 N N N N N N 29.276 2.698 12.980 5.391 2.846 -0.708 C9 A1ICP 22 A1ICP C11 C17 C 0 1 N N N N N N 29.251 -4.495 20.564 -0.889 -2.423 -1.266 C11 A1ICP 23 A1ICP C12 C18 C 0 1 N N N N N N 29.079 -1.996 20.805 -1.237 -0.603 0.381 C12 A1ICP 24 A1ICP O4 O4 O 0 1 N N N N N N 30.153 -1.400 20.905 -0.976 -0.534 1.563 O4 A1ICP 25 A1ICP N4 N4 N 0 1 N N N N N N 27.939 -1.625 21.403 -2.412 -0.128 -0.078 N4 A1ICP 26 A1ICP C14 C19 C 0 1 N N S N N N 27.842 -0.574 22.407 -3.374 0.470 0.851 C14 A1ICP 27 A1ICP C16 C20 C 0 1 N N S N N N 27.906 -1.217 23.805 -4.207 -0.635 1.504 C16 A1ICP 28 A1ICP N5 N5 N 0 1 N N N N N N 28.839 -0.864 25.973 -4.612 0.531 3.648 N5 A1ICP 29 A1ICP C18 C21 C 0 1 N N N N N N 28.579 -6.997 20.362 -0.341 -4.256 -3.051 C18 A1ICP 30 A1ICP C19 C22 C 0 1 N N N N N N 27.492 -6.200 19.688 -0.385 -2.915 -3.786 C19 A1ICP 31 A1ICP N6 N6 N 0 1 N N N N N N 26.981 3.467 20.190 -2.975 2.410 -2.741 N6 A1ICP 32 A1ICP C23 C23 C 0 1 N N N N N N 28.700 2.064 20.995 -4.397 3.588 -1.211 C23 A1ICP 33 A1ICP O5 O5 O 0 1 N N N N N N 25.176 2.056 20.220 -1.461 1.547 -1.289 O5 A1ICP 34 A1ICP O6 O6 O 0 1 N N N N N N 28.003 -2.591 24.001 -4.984 -1.298 0.505 O6 A1ICP 35 A1ICP O7 O7 O 0 1 N N N N N N 27.291 0.706 25.112 -6.326 -0.046 2.362 O7 A1ICP 36 A1ICP H3 H1 H 0 1 N N N N N N 28.828 -0.727 15.555 5.270 -1.697 0.048 H3 A1ICP 37 A1ICP H6 H2 H 0 1 N N N N N N 31.487 3.804 14.183 5.955 3.674 1.828 H6 A1ICP 38 A1ICP H4 H3 H 0 1 N N N N N N 30.316 3.220 15.413 4.763 2.354 1.899 H4 A1ICP 39 A1ICP H5 H4 H 0 1 N N N N N N 31.885 2.374 15.195 6.420 2.090 2.494 H5 A1ICP 40 A1ICP H9 H5 H 0 1 N N N N N N 31.890 2.351 12.108 8.322 1.969 0.879 H9 A1ICP 41 A1ICP H8 H6 H 0 1 N N N N N N 32.235 0.939 13.164 8.021 2.147 -0.867 H8 A1ICP 42 A1ICP H7 H7 H 0 1 N N N N N N 30.940 0.837 11.923 7.858 3.553 0.213 H7 A1ICP 43 A1ICP H13 H8 H 0 1 N N N N N N 27.903 -3.210 19.528 0.040 -0.481 -1.325 H13 A1ICP 44 A1ICP H16 H9 H 0 1 N N N N N N 29.434 -5.750 18.770 1.129 -2.826 -2.123 H16 A1ICP 45 A1ICP H20 H10 H 0 1 N N N N N N 25.872 0.073 21.788 -5.067 1.798 0.761 H20 A1ICP 46 A1ICP H19 H11 H 0 1 N N N N N N 26.728 1.221 22.872 -4.766 0.888 -0.739 H19 A1ICP 47 A1ICP H29 H12 H 0 1 N N N N N N 27.564 0.531 19.997 -2.948 3.098 0.347 H29 A1ICP 48 A1ICP H32 H13 H 0 1 N N N N N N 28.982 3.668 19.538 -4.297 3.934 -3.358 H32 A1ICP 49 A1ICP H31 H14 H 0 1 N N N N N N 28.663 4.238 21.211 -5.079 2.393 -2.898 H31 A1ICP 50 A1ICP H1 H15 H 0 1 N N N N N N 31.349 -4.268 19.355 -0.150 -2.970 1.383 H1 A1ICP 51 A1ICP H2 H16 H 0 1 N N N N N N 32.096 -2.218 15.809 3.932 -2.878 2.145 H2 A1ICP 52 A1ICP H11 H17 H 0 1 N N N N N N 29.633 3.600 12.462 5.532 3.924 -0.622 H11 A1ICP 53 A1ICP H10 H18 H 0 1 N N N N N N 28.811 2.017 12.252 5.695 2.518 -1.701 H10 A1ICP 54 A1ICP H12 H19 H 0 1 N N N N N N 28.535 2.982 13.742 4.340 2.604 -0.551 H12 A1ICP 55 A1ICP H14 H20 H 0 1 N N N N N N 30.326 -4.536 20.792 -1.096 -3.198 -0.528 H14 A1ICP 56 A1ICP H15 H21 H 0 1 N N N N N N 28.676 -4.539 21.501 -1.820 -2.117 -1.742 H15 A1ICP 57 A1ICP H17 H22 H 0 1 N N N N N N 27.099 -2.101 21.143 -2.621 -0.183 -1.024 H17 A1ICP 58 A1ICP H18 H23 H 0 1 N N N N N N 28.811 -0.059 22.333 -2.838 1.024 1.622 H18 A1ICP 59 A1ICP H21 H24 H 0 1 N N N N N N 29.002 -1.120 23.818 -3.544 -1.354 1.986 H21 A1ICP 60 A1ICP H22 H25 H 0 1 N N N N N N 29.164 -0.283 26.720 -5.204 0.856 4.344 H22 A1ICP 61 A1ICP H23 H26 H 0 1 N N N N N N 29.218 -1.782 25.852 -3.651 0.610 3.752 H23 A1ICP 62 A1ICP H26 H27 H 0 1 N N N N N N 28.941 -7.930 19.906 0.450 -4.954 -3.325 H26 A1ICP 63 A1ICP H25 H28 H 0 1 N N N N N N 28.591 -7.095 21.458 -1.293 -4.709 -2.773 H25 A1ICP 64 A1ICP H28 H29 H 0 1 N N N N N N 27.059 -6.551 18.739 -1.366 -2.486 -3.992 H28 A1ICP 65 A1ICP H27 H30 H 0 1 N N N N N N 26.710 -5.716 20.291 0.377 -2.730 -4.543 H27 A1ICP 66 A1ICP H30 H31 H 0 1 N N N N N N 26.483 4.286 19.907 -2.513 2.201 -3.568 H30 A1ICP 67 A1ICP H34 H32 H 0 1 N N N N N N 29.522 1.602 20.429 -5.425 3.513 -0.858 H34 A1ICP 68 A1ICP H33 H33 H 0 1 N N N N N N 28.968 2.108 22.061 -4.027 4.609 -1.114 H33 A1ICP 69 A1ICP H35 H34 H 0 1 N N N N N N 28.029 -2.777 24.932 -4.458 -1.712 -0.192 H35 A1ICP 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ICP N1 C1 SING N N 1 A1ICP C1 N2 DOUB N N 2 A1ICP N2 C2 SING N N 3 A1ICP C2 C3 DOUB N N 4 A1ICP C3 C4 SING N N 5 A1ICP N1 C4 SING N N 6 A1ICP C3 N3 SING N N 7 A1ICP N3 C5 SING N N 8 A1ICP C5 O1 SING N N 9 A1ICP C4 O2 DOUB N N 10 A1ICP C5 O3 DOUB N N 11 A1ICP O1 C6 SING N N 12 A1ICP C6 C7 SING N N 13 A1ICP C6 C8 SING N N 14 A1ICP C6 C9 SING N N 15 A1ICP N1 C10 SING N N 16 A1ICP C10 C11 SING N N 17 A1ICP C10 C12 SING N N 18 A1ICP C11 C13 SING N N 19 A1ICP C12 O4 DOUB N N 20 A1ICP C12 N4 SING N N 21 A1ICP N4 C14 SING N N 22 A1ICP C14 C15 SING N N 23 A1ICP C14 C16 SING N N 24 A1ICP C16 C17 SING N N 25 A1ICP C17 N5 SING N N 26 A1ICP C13 C18 SING N N 27 A1ICP C18 C19 SING N N 28 A1ICP C13 C19 SING N N 29 A1ICP C15 C20 SING N N 30 A1ICP C20 C21 SING N N 31 A1ICP C21 N6 SING N N 32 A1ICP N6 C22 SING N N 33 A1ICP C22 C23 SING N N 34 A1ICP C20 C23 SING N N 35 A1ICP C21 O5 DOUB N N 36 A1ICP C16 O6 SING N N 37 A1ICP C17 O7 DOUB N N 38 A1ICP N3 H3 SING N N 39 A1ICP C7 H6 SING N N 40 A1ICP C7 H4 SING N N 41 A1ICP C7 H5 SING N N 42 A1ICP C8 H9 SING N N 43 A1ICP C8 H8 SING N N 44 A1ICP C8 H7 SING N N 45 A1ICP C10 H13 SING N N 46 A1ICP C13 H16 SING N N 47 A1ICP C15 H20 SING N N 48 A1ICP C15 H19 SING N N 49 A1ICP C20 H29 SING N N 50 A1ICP C22 H32 SING N N 51 A1ICP C22 H31 SING N N 52 A1ICP C1 H1 SING N N 53 A1ICP C2 H2 SING N N 54 A1ICP C9 H11 SING N N 55 A1ICP C9 H10 SING N N 56 A1ICP C9 H12 SING N N 57 A1ICP C11 H14 SING N N 58 A1ICP C11 H15 SING N N 59 A1ICP N4 H17 SING N N 60 A1ICP C14 H18 SING N N 61 A1ICP C16 H21 SING N N 62 A1ICP N5 H22 SING N N 63 A1ICP N5 H23 SING N N 64 A1ICP C18 H26 SING N N 65 A1ICP C18 H25 SING N N 66 A1ICP C19 H28 SING N N 67 A1ICP C19 H27 SING N N 68 A1ICP N6 H30 SING N N 69 A1ICP C23 H34 SING N N 70 A1ICP C23 H33 SING N N 71 A1ICP O6 H35 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ICP InChI InChI 1.06 "InChI=1S/C23H34N6O7/c1-23(2,3)36-22(35)28-15-10-25-11-29(21(15)34)16(8-12-4-5-12)20(33)27-14(17(30)18(24)31)9-13-6-7-26-19(13)32/h10-14,16-17,30H,4-9H2,1-3H3,(H2,24,31)(H,26,32)(H,27,33)(H,28,35)/t13-,14+,16-,17+/m0/s1" A1ICP InChIKey InChI 1.06 QIVRQJJOLGOJTC-HDEZJCGLSA-N A1ICP SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)NC1=CN=CN([C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)C(N)=O)C1=O" A1ICP SMILES CACTVS 3.385 "CC(C)(C)OC(=O)NC1=CN=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(N)=O)C1=O" A1ICP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CN=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C(C(=O)N)O" A1ICP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CN=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)N)O" # _pdbx_chem_comp_identifier.comp_id A1ICP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-6-oxidanylidene-pyrimidin-5-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ICP "Create component" 2024-06-03 PDBE A1ICP "Modify PCM" 2024-09-27 PDBE A1ICP "Initial release" 2025-01-29 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ICP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C16 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #