data_A1ICT # _chem_comp.id A1ICT _chem_comp.name "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyrimidin-5-ylthiophen-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H37 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-04 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 623.768 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ICT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FIT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ICT O03 O1 O 0 1 N N N N N N -70.411 -1.755 -10.092 6.366 -1.018 0.209 O03 A1ICT 1 A1ICT C04 C1 C 0 1 N N N N N N -70.672 -2.686 -9.376 6.826 0.077 -0.064 C04 A1ICT 2 A1ICT C14 C2 C 0 1 Y N N N N N -71.848 -3.212 -9.385 7.894 0.625 0.683 C14 A1ICT 3 A1ICT C12 C3 C 0 1 Y N N N N N -72.909 -2.888 -10.066 8.685 0.178 1.826 C12 A1ICT 4 A1ICT C10 C4 C 0 1 Y N N N N N -73.889 -3.667 -9.744 9.573 1.154 2.086 C10 A1ICT 5 A1ICT N09 N1 N 0 1 Y N N N N N -73.402 -4.515 -8.841 9.403 2.180 1.195 N09 A1ICT 6 A1ICT C05 C5 C 0 1 N N N N N N -74.141 -5.593 -8.182 10.194 3.413 1.173 C05 A1ICT 7 A1ICT C15 C6 C 0 1 Y N N N N N -72.149 -4.226 -8.613 8.390 1.887 0.330 C15 A1ICT 8 A1ICT N16 N2 N 0 1 N N N N N N -71.283 -4.775 -7.785 7.836 2.539 -0.706 N16 A1ICT 9 A1ICT C17 C7 C 0 1 N N N N N N -70.028 -4.258 -7.768 6.852 2.021 -1.383 C17 A1ICT 10 A1ICT N19 N3 N 0 1 N N N N N N -69.737 -3.172 -8.600 6.333 0.800 -1.095 N19 A1ICT 11 A1ICT C20 C8 C 0 1 N N N N N N -68.376 -2.619 -8.613 5.230 0.268 -1.900 C20 A1ICT 12 A1ICT C80 C9 C 0 1 N N N N N N -67.587 -3.424 -9.712 3.897 0.704 -1.289 C80 A1ICT 13 A1ICT C81 C10 C 0 1 N N N N N N -68.221 -3.405 -11.143 2.746 0.047 -2.055 C81 A1ICT 14 A1ICT C70 C11 C 0 1 N N N N N N -67.420 -4.383 -12.045 1.413 0.513 -1.463 C70 A1ICT 15 A1ICT O01 O2 O 0 1 N N N N N N -67.621 -4.768 -9.237 3.776 2.126 -1.376 O01 A1ICT 16 A1ICT C77 C12 C 0 1 N N N N N N -66.154 -2.942 -9.842 3.844 0.277 0.179 C77 A1ICT 17 A1ICT C74 C13 C 0 1 N N N N N N -65.385 -4.022 -10.527 2.523 0.746 0.796 C74 A1ICT 18 A1ICT N73 N4 N 0 1 N N N N N N -65.938 -4.123 -11.901 1.413 0.237 -0.020 N73 A1ICT 19 A1ICT C69 C14 C 0 1 N N N N N N -65.153 -3.811 -12.925 0.414 -0.471 0.544 C69 A1ICT 20 A1ICT O68 O3 O 0 1 N N N N N N -63.987 -3.495 -12.752 0.469 -0.768 1.719 O68 A1ICT 21 A1ICT C66 C15 C 0 1 N N R N N N -65.872 -3.662 -14.261 -0.772 -0.892 -0.285 C66 A1ICT 22 A1ICT C64 C16 C 0 1 N N R N N N -65.445 -2.317 -14.849 -1.448 -2.102 0.367 C64 A1ICT 23 A1ICT C50 C17 C 0 1 N N N N N N -65.681 -2.203 -16.418 -2.686 -2.487 -0.446 C50 A1ICT 24 A1ICT C63 C18 C 0 1 Y N N N N N -66.055 -1.328 -14.087 -0.485 -3.260 0.397 C63 A1ICT 25 A1ICT C53 C19 C 0 1 Y N N N N N -65.260 -0.591 -13.231 -0.117 -3.822 1.605 C53 A1ICT 26 A1ICT C55 C20 C 0 1 Y N N N N N -65.784 0.377 -12.407 0.766 -4.885 1.633 C55 A1ICT 27 A1ICT C57 C21 C 0 1 Y N N N N N -67.132 0.615 -12.460 1.281 -5.387 0.452 C57 A1ICT 28 A1ICT C59 C22 C 0 1 Y N N N N N -67.949 -0.122 -13.305 0.913 -4.825 -0.757 C59 A1ICT 29 A1ICT C61 C23 C 0 1 Y N N N N N -67.423 -1.104 -14.121 0.025 -3.766 -0.784 C61 A1ICT 30 A1ICT C23 C24 C 0 1 N N N N N N -65.751 -4.832 -15.206 -1.775 0.262 -0.367 C23 A1ICT 31 A1ICT C26 C25 C 0 1 N N N N N N -66.413 -4.409 -16.498 -3.004 -0.192 -1.158 C26 A1ICT 32 A1ICT N48 N5 N 0 1 N N N N N N -65.508 -3.462 -17.174 -3.615 -1.351 -0.493 N48 A1ICT 33 A1ICT C45 C26 C 0 1 N N N N N N -65.917 -3.350 -18.604 -4.876 -1.728 -1.146 C45 A1ICT 34 A1ICT C44 C27 C 0 1 Y N N N N N -65.377 -4.482 -19.537 -5.889 -0.629 -0.956 C44 A1ICT 35 A1ICT S29 S1 S 0 1 Y N N N N N -66.291 -5.815 -20.020 -7.015 -0.513 0.391 S29 A1ICT 36 A1ICT C42 C28 C 0 1 Y N N N N N -64.130 -4.546 -20.041 -6.064 0.407 -1.781 C42 A1ICT 37 A1ICT C40 C29 C 0 1 Y N N N N N -63.928 -5.633 -20.788 -7.053 1.293 -1.406 C40 A1ICT 38 A1ICT C39 C30 C 0 1 Y N N N N N -65.004 -6.413 -20.876 -7.688 0.976 -0.260 C39 A1ICT 39 A1ICT C38 C31 C 0 1 Y N N N N N -65.026 -7.559 -21.505 -8.781 1.759 0.355 C38 A1ICT 40 A1ICT C30 C32 C 0 1 Y N N N N N -63.820 -8.110 -21.937 -9.378 1.344 1.551 C30 A1ICT 41 A1ICT N32 N6 N 0 1 Y N N N N N -63.859 -9.361 -22.571 -10.352 2.075 2.066 N32 A1ICT 42 A1ICT C33 C33 C 0 1 Y N N N N N -65.089 -10.069 -22.758 -10.761 3.178 1.469 C33 A1ICT 43 A1ICT N35 N7 N 0 1 Y N N N N N -66.288 -9.528 -22.305 -10.226 3.604 0.342 N35 A1ICT 44 A1ICT C36 C34 C 0 1 Y N N N N N -66.232 -8.277 -21.671 -9.243 2.938 -0.239 C36 A1ICT 45 A1ICT H12 H1 H 0 1 N N N N N N -72.962 -2.089 -10.791 8.577 -0.754 2.360 H12 A1ICT 46 A1ICT H10 H2 H 0 1 N N N N N N -74.897 -3.636 -10.129 10.308 1.133 2.877 H10 A1ICT 47 A1ICT H05 H3 H 0 1 N N N N N N -73.474 -6.124 -7.487 11.063 3.276 0.530 H05 A1ICT 48 A1ICT H06 H4 H 0 1 N N N N N N -74.989 -5.169 -7.625 9.583 4.230 0.789 H06 A1ICT 49 A1ICT H07 H5 H 0 1 N N N N N N -74.516 -6.297 -8.940 10.524 3.651 2.185 H07 A1ICT 50 A1ICT H17 H6 H 0 1 N N N N N N -69.269 -4.677 -7.124 6.437 2.581 -2.209 H17 A1ICT 51 A1ICT H21 H7 H 0 1 N N N N N N -67.901 -2.750 -7.629 5.306 0.649 -2.918 H21 A1ICT 52 A1ICT H20 H8 H 0 1 N N N N N N -68.401 -1.549 -8.868 5.284 -0.821 -1.914 H20 A1ICT 53 A1ICT H82 H9 H 0 1 N N N N N N -68.169 -2.388 -11.559 2.798 0.334 -3.105 H82 A1ICT 54 A1ICT H81 H10 H 0 1 N N N N N N -69.272 -3.726 -11.088 2.824 -1.036 -1.969 H81 A1ICT 55 A1ICT H70 H11 H 0 1 N N N N N N -67.715 -4.236 -13.094 1.293 1.584 -1.629 H70 A1ICT 56 A1ICT H71 H12 H 0 1 N N N N N N -67.639 -5.418 -11.744 0.593 -0.026 -1.938 H71 A1ICT 57 A1ICT H01 H13 H 0 1 N N N N N N -67.241 -4.807 -8.367 4.474 2.609 -0.912 H01 A1ICT 58 A1ICT H78 H14 H 0 1 N N N N N N -65.729 -2.751 -8.846 3.911 -0.809 0.245 H78 A1ICT 59 A1ICT H77 H15 H 0 1 N N N N N N -66.120 -2.019 -10.439 4.678 0.726 0.719 H77 A1ICT 60 A1ICT H75 H16 H 0 1 N N N N N N -65.512 -4.976 -9.995 2.436 0.359 1.812 H75 A1ICT 61 A1ICT H74 H17 H 0 1 N N N N N N -64.317 -3.763 -10.565 2.495 1.835 0.816 H74 A1ICT 62 A1ICT H66 H18 H 0 1 N N N N N N -66.942 -3.566 -14.024 -0.439 -1.158 -1.288 H66 A1ICT 63 A1ICT H64 H19 H 0 1 N N N N N N -64.357 -2.243 -14.702 -1.744 -1.848 1.385 H64 A1ICT 64 A1ICT H50 H20 H 0 1 N N N N N N -64.968 -1.466 -16.817 -2.387 -2.754 -1.459 H50 A1ICT 65 A1ICT H51 H21 H 0 1 N N N N N N -66.708 -1.846 -16.582 -3.178 -3.339 0.024 H51 A1ICT 66 A1ICT H53 H22 H 0 1 N N N N N N -64.197 -0.780 -13.208 -0.519 -3.430 2.528 H53 A1ICT 67 A1ICT H55 H23 H 0 1 N N N N N N -65.149 0.935 -11.735 1.055 -5.323 2.576 H55 A1ICT 68 A1ICT H57 H24 H 0 1 N N N N N N -67.563 1.385 -11.837 1.971 -6.217 0.473 H57 A1ICT 69 A1ICT H59 H25 H 0 1 N N N N N N -69.011 0.075 -13.325 1.315 -5.217 -1.679 H59 A1ICT 70 A1ICT H61 H26 H 0 1 N N N N N N -68.062 -1.684 -14.770 -0.266 -3.330 -1.729 H61 A1ICT 71 A1ICT H24 H27 H 0 1 N N N N N N -66.261 -5.713 -14.788 -2.077 0.554 0.639 H24 A1ICT 72 A1ICT H23 H28 H 0 1 N N N N N N -64.692 -5.071 -15.382 -1.312 1.112 -0.869 H23 A1ICT 73 A1ICT H27 H29 H 0 1 N N N N N N -67.375 -3.920 -16.284 -3.726 0.623 -1.206 H27 A1ICT 74 A1ICT H26 H30 H 0 1 N N N N N N -66.582 -5.288 -17.138 -2.703 -0.470 -2.168 H26 A1ICT 75 A1ICT H46 H32 H 0 1 N N N N N N -65.551 -2.387 -18.989 -4.701 -1.881 -2.211 H46 A1ICT 76 A1ICT H45 H33 H 0 1 N N N N N N -67.016 -3.368 -18.647 -5.253 -2.650 -0.704 H45 A1ICT 77 A1ICT H42 H34 H 0 1 N N N N N N -63.373 -3.797 -19.860 -5.475 0.540 -2.677 H42 A1ICT 78 A1ICT H40 H35 H 0 1 N N N N N N -62.989 -5.857 -21.272 -7.297 2.172 -1.983 H40 A1ICT 79 A1ICT H30 H36 H 0 1 N N N N N N -62.885 -7.590 -21.788 -9.049 0.442 2.045 H30 A1ICT 80 A1ICT H33 H37 H 0 1 N N N N N N -65.086 -11.029 -23.254 -11.559 3.749 1.918 H33 A1ICT 81 A1ICT H36 H38 H 0 1 N N N N N N -67.148 -7.846 -21.295 -8.810 3.295 -1.162 H36 A1ICT 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ICT C33 N32 DOUB Y N 1 A1ICT C33 N35 SING Y N 2 A1ICT N32 C30 SING Y N 3 A1ICT N35 C36 DOUB Y N 4 A1ICT C30 C38 DOUB Y N 5 A1ICT C36 C38 SING Y N 6 A1ICT C38 C39 SING N N 7 A1ICT C39 C40 DOUB Y N 8 A1ICT C39 S29 SING Y N 9 A1ICT C40 C42 SING Y N 10 A1ICT C42 C44 DOUB Y N 11 A1ICT S29 C44 SING Y N 12 A1ICT C44 C45 SING N N 13 A1ICT C45 N48 SING N N 14 A1ICT N48 C26 SING N N 15 A1ICT N48 C50 SING N N 16 A1ICT C26 C23 SING N N 17 A1ICT C50 C64 SING N N 18 A1ICT C23 C66 SING N N 19 A1ICT C64 C66 SING N N 20 A1ICT C64 C63 SING N N 21 A1ICT C66 C69 SING N N 22 A1ICT C61 C63 DOUB Y N 23 A1ICT C61 C59 SING Y N 24 A1ICT C63 C53 SING Y N 25 A1ICT C59 C57 DOUB Y N 26 A1ICT C53 C55 DOUB Y N 27 A1ICT C69 O68 DOUB N N 28 A1ICT C69 N73 SING N N 29 A1ICT C57 C55 SING Y N 30 A1ICT C70 N73 SING N N 31 A1ICT C70 C81 SING N N 32 A1ICT N73 C74 SING N N 33 A1ICT C81 C80 SING N N 34 A1ICT C74 C77 SING N N 35 A1ICT O03 C04 DOUB N N 36 A1ICT C12 C10 DOUB Y N 37 A1ICT C12 C14 SING Y N 38 A1ICT C77 C80 SING N N 39 A1ICT C10 N09 SING Y N 40 A1ICT C80 O01 SING N N 41 A1ICT C80 C20 SING N N 42 A1ICT C14 C04 SING N N 43 A1ICT C14 C15 DOUB Y N 44 A1ICT C04 N19 SING N N 45 A1ICT N09 C15 SING Y N 46 A1ICT N09 C05 SING N N 47 A1ICT C15 N16 SING N N 48 A1ICT C20 N19 SING N N 49 A1ICT N19 C17 SING N N 50 A1ICT N16 C17 DOUB N N 51 A1ICT C12 H12 SING N N 52 A1ICT C10 H10 SING N N 53 A1ICT C05 H05 SING N N 54 A1ICT C05 H06 SING N N 55 A1ICT C05 H07 SING N N 56 A1ICT C17 H17 SING N N 57 A1ICT C20 H21 SING N N 58 A1ICT C20 H20 SING N N 59 A1ICT C81 H82 SING N N 60 A1ICT C81 H81 SING N N 61 A1ICT C70 H70 SING N N 62 A1ICT C70 H71 SING N N 63 A1ICT O01 H01 SING N N 64 A1ICT C77 H78 SING N N 65 A1ICT C77 H77 SING N N 66 A1ICT C74 H75 SING N N 67 A1ICT C74 H74 SING N N 68 A1ICT C66 H66 SING N N 69 A1ICT C64 H64 SING N N 70 A1ICT C50 H50 SING N N 71 A1ICT C50 H51 SING N N 72 A1ICT C53 H53 SING N N 73 A1ICT C55 H55 SING N N 74 A1ICT C57 H57 SING N N 75 A1ICT C59 H59 SING N N 76 A1ICT C61 H61 SING N N 77 A1ICT C23 H24 SING N N 78 A1ICT C23 H23 SING N N 79 A1ICT C26 H27 SING N N 80 A1ICT C26 H26 SING N N 81 A1ICT C45 H46 SING N N 82 A1ICT C45 H45 SING N N 83 A1ICT C42 H42 SING N N 84 A1ICT C40 H40 SING N N 85 A1ICT C30 H30 SING N N 86 A1ICT C33 H33 SING N N 87 A1ICT C36 H36 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ICT InChI InChI 1.06 "InChI=1S/C34H37N7O3S/c1-38-13-9-28-31(38)37-23-41(33(28)43)21-34(44)11-15-40(16-12-34)32(42)27-10-14-39(20-29(27)24-5-3-2-4-6-24)19-26-7-8-30(45-26)25-17-35-22-36-18-25/h2-9,13,17-18,22-23,27,29,44H,10-12,14-16,19-21H2,1H3/t27-,29+/m1/s1" A1ICT InChIKey InChI 1.06 NZZFXHIASCZNOO-PXJZQJOASA-N A1ICT SMILES_CANONICAL CACTVS 3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6sc(cc6)c7cncnc7)C=Nc12" A1ICT SMILES CACTVS 3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[CH]4CCN(C[CH]4c5ccccc5)Cc6sc(cc6)c7cncnc7)C=Nc12" A1ICT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6ccc(s6)c7cncnc7)O" A1ICT SMILES "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)C4CCN(CC4c5ccccc5)Cc6ccc(s6)c7cncnc7)O" # _pdbx_chem_comp_identifier.comp_id A1ICT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyrimidin-5-ylthiophen-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ICT "Create component" 2024-06-04 PDBE A1ICT "Initial release" 2024-11-06 RCSB #