data_A1ICX # _chem_comp.id A1ICX _chem_comp.name "3-[[1-[(3~{R},4~{R})-1-[5-(3-methoxypyridin-4-yl)thiophen-2-yl]carbonyl-3-phenyl-piperidin-4-yl]carbonyl-4-oxidanyl-piperidin-4-yl]methyl]-7-methyl-pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H38 N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-04 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 666.789 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ICX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FIU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ICX C10 C1 C 0 1 Y N N N N N 164.348 2.115 175.419 8.738 1.886 1.956 C10 A1ICX 1 A1ICX C15 C2 C 0 1 Y N N N N N 169.466 3.105 173.275 5.663 -0.501 -2.617 C15 A1ICX 2 A1ICX C17 C3 C 0 1 N N N N N N 170.151 4.813 171.818 3.299 0.296 -2.926 C17 A1ICX 3 A1ICX C20 C4 C 0 1 Y N N N N N 174.011 6.025 168.396 1.626 -2.460 1.696 C20 A1ICX 4 A1ICX C21 C5 C 0 1 Y N N N N N 174.715 7.017 167.730 1.493 -2.554 3.069 C21 A1ICX 5 A1ICX C24 C6 C 0 1 Y N N N N N 171.913 7.086 167.818 0.513 -0.340 1.734 C24 A1ICX 6 A1ICX C28 C7 C 0 1 N N N N N N 171.992 3.584 164.663 -3.058 -3.442 -0.302 C28 A1ICX 7 A1ICX C01 C8 C 0 1 N N N N N N 171.260 2.570 169.265 0.057 -1.071 -2.635 C01 A1ICX 8 A1ICX C02 C9 C 0 1 N N N N N N 171.264 2.790 170.788 0.854 0.184 -3.003 C02 A1ICX 9 A1ICX C05 C10 C 0 1 N N N N N N 166.691 3.186 176.993 7.521 4.110 0.990 C05 A1ICX 10 A1ICX C07 C11 C 0 1 Y N N N N N 164.901 2.963 172.787 8.195 -0.621 1.013 C07 A1ICX 11 A1ICX C11 C12 C 0 1 Y N N N N N 165.656 2.400 175.005 7.802 1.750 0.942 C11 A1ICX 12 A1ICX C14 C13 C 0 1 Y N N N N N 168.350 2.540 173.770 6.731 -0.456 -1.763 C14 A1ICX 13 A1ICX C16 C14 C 0 1 Y N N N N N 169.214 4.092 172.406 4.564 0.191 -2.194 C16 A1ICX 14 A1ICX C19 C15 C 0 1 N N N N N N 172.227 5.021 170.509 2.101 0.008 -0.811 C19 A1ICX 15 A1ICX C25 C16 C 0 1 Y N N N N N 172.615 6.055 168.434 1.138 -1.351 1.029 C25 A1ICX 16 A1ICX C29 C17 C 0 1 N N N N N N 172.895 4.577 163.926 -4.011 -2.993 0.810 C29 A1ICX 17 A1ICX C30 C18 C 0 1 N N N N N N 176.804 3.246 162.181 -7.772 -0.436 0.297 C30 A1ICX 18 A1ICX C33 C19 C 0 1 N N N N N N 181.224 1.914 162.351 -9.980 3.172 -1.027 C33 A1ICX 19 A1ICX N09 N1 N 0 1 Y N N N N N 163.297 2.253 174.522 9.355 0.831 2.450 N09 A1ICX 20 A1ICX O38 O1 O 0 1 N N N N N N 177.396 5.791 164.456 -5.103 1.235 1.746 O38 A1ICX 21 A1ICX C39 C20 C 0 1 N N N N N N 177.598 4.830 163.724 -6.155 1.032 1.164 C39 A1ICX 22 A1ICX C37 C21 C 0 1 Y N N N N N 178.816 4.287 163.632 -6.946 2.106 0.695 C37 A1ICX 23 A1ICX C36 C22 C 0 1 Y N N N N N 179.933 4.621 164.245 -6.826 3.561 0.725 C36 A1ICX 24 A1ICX C35 C23 C 0 1 Y N N N N N 180.889 3.800 163.837 -7.914 4.051 0.105 C35 A1ICX 25 A1ICX N34 N2 N 0 1 Y N N N N N 180.370 2.949 162.966 -8.709 3.017 -0.314 N34 A1ICX 26 A1ICX C32 C24 C 0 1 Y N N N N N 179.079 3.240 162.838 -8.152 1.824 0.040 C32 A1ICX 27 A1ICX N31 N3 N 0 1 N N N N N N 178.095 2.692 162.105 -8.514 0.543 -0.136 N31 A1ICX 28 A1ICX N40 N4 N 0 1 N N N N N N 176.578 4.341 163.024 -6.599 -0.228 0.947 N40 A1ICX 29 A1ICX C41 C25 C 0 1 N N N N N N 175.241 4.944 163.135 -5.811 -1.370 1.416 C41 A1ICX 30 A1ICX C43 C26 C 0 1 N N N N N N 174.349 4.065 163.984 -4.834 -1.800 0.320 C43 A1ICX 31 A1ICX C44 C27 C 0 1 N N N N N N 174.805 4.084 165.436 -3.898 -0.636 -0.014 C44 A1ICX 32 A1ICX C45 C28 C 0 1 N N N N N N 173.920 3.128 166.272 -2.944 -1.058 -1.135 C45 A1ICX 33 A1ICX O42 O2 O 0 1 N N N N N N 174.435 2.741 163.447 -5.564 -2.174 -0.850 O42 A1ICX 34 A1ICX N46 N5 N 0 1 N N N N N N 172.476 3.442 166.063 -2.253 -2.290 -0.729 N46 A1ICX 35 A1ICX C47 C29 C 0 1 N N N N N N 171.574 3.668 167.032 -0.908 -2.361 -0.749 C47 A1ICX 36 A1ICX O27 O3 O 0 1 N N N N N N 170.394 3.942 166.773 -0.351 -3.402 -0.473 O27 A1ICX 37 A1ICX C48 C30 C 0 1 N N R N N N 172.069 3.632 168.500 -0.094 -1.146 -1.113 C48 A1ICX 38 A1ICX C26 C31 C 0 1 N N R N N N 171.886 5.055 169.093 1.289 -1.245 -0.466 C26 A1ICX 39 A1ICX C22 C32 C 0 1 Y N N N N N 174.010 8.033 167.117 0.872 -1.541 3.775 C22 A1ICX 40 A1ICX C23 C33 C 0 1 Y N N N N N 172.615 8.069 167.154 0.384 -0.433 3.108 C23 A1ICX 41 A1ICX N18 N6 N 0 1 N N N N N N 171.167 4.225 171.132 2.128 0.167 -2.271 N18 A1ICX 42 A1ICX O03 O4 O 0 1 N N N N N N 170.097 6.029 172.031 3.306 0.499 -4.126 O03 A1ICX 43 A1ICX S04 S1 S 0 1 Y N N N N N 167.629 4.354 172.243 4.897 0.937 -0.637 S04 A1ICX 44 A1ICX C13 C34 C 0 1 Y N N N N N 167.220 3.102 173.309 6.523 0.269 -0.625 C13 A1ICX 45 A1ICX C12 C35 C 0 1 Y N N N N N 165.962 2.792 173.678 7.516 0.466 0.450 C12 A1ICX 46 A1ICX C08 C36 C 0 1 Y N N N N N 163.593 2.680 173.204 9.115 -0.391 2.015 C08 A1ICX 47 A1ICX O06 O5 O 0 1 N N N N N N 166.691 2.258 175.900 7.173 2.841 0.433 O06 A1ICX 48 A1ICX H10 H1 H 0 1 N N N N N N 164.158 1.789 176.431 8.966 2.868 2.343 H10 A1ICX 49 A1ICX H15 H2 H 0 1 N N N N N N 170.463 2.794 173.550 5.689 -1.038 -3.554 H15 A1ICX 50 A1ICX H20 H3 H 0 1 N N N N N N 174.545 5.225 168.888 2.115 -3.250 1.145 H20 A1ICX 51 A1ICX H21 H4 H 0 1 N N N N N N 175.794 6.995 167.692 1.874 -3.420 3.590 H21 A1ICX 52 A1ICX H24 H5 H 0 1 N N N N N N 170.834 7.116 167.859 0.132 0.526 1.214 H24 A1ICX 53 A1ICX H28 H6 H 0 1 N N N N N N 170.957 3.957 164.666 -2.401 -4.227 0.075 H28 A1ICX 54 A1ICX H29 H7 H 0 1 N N N N N N 172.028 2.607 164.159 -3.632 -3.821 -1.147 H29 A1ICX 55 A1ICX H01 H8 H 0 1 N N N N N N 170.219 2.599 168.910 -0.930 -1.023 -3.096 H01 A1ICX 56 A1ICX H02 H9 H 0 1 N N N N N N 171.692 1.581 169.053 0.584 -1.955 -2.993 H02 A1ICX 57 A1ICX H03 H10 H 0 1 N N N N N N 170.407 2.259 171.227 1.050 0.191 -4.076 H03 A1ICX 58 A1ICX H04 H11 H 0 1 N N N N N N 172.198 2.386 171.204 0.286 1.072 -2.728 H04 A1ICX 59 A1ICX H07 H12 H 0 1 N N N N N N 167.555 2.986 177.644 6.947 4.894 0.495 H07 A1ICX 60 A1ICX H05 H13 H 0 1 N N N N N N 166.756 4.212 176.602 7.296 4.113 2.057 H05 A1ICX 61 A1ICX H06 H14 H 0 1 N N N N N N 165.762 3.072 177.571 8.586 4.291 0.843 H06 A1ICX 62 A1ICX H08 H15 H 0 1 N N N N N N 165.087 3.311 171.782 8.005 -1.625 0.664 H08 A1ICX 63 A1ICX H14 H16 H 0 1 N N N N N N 168.361 1.716 174.469 7.666 -0.955 -1.973 H14 A1ICX 64 A1ICX H2A H17 H 0 1 N N N N N N 173.208 4.546 170.660 1.634 0.882 -0.356 H2A A1ICX 65 A1ICX H19 H18 H 0 1 N N N N N N 172.244 6.038 170.928 3.119 -0.100 -0.436 H19 A1ICX 66 A1ICX H3A H19 H 0 1 N N N N N N 172.831 5.563 164.409 -4.679 -3.814 1.070 H3A A1ICX 67 A1ICX H3B H20 H 0 1 N N N N N N 172.574 4.660 162.877 -3.434 -2.702 1.688 H3B A1ICX 68 A1ICX H30 H21 H 0 1 N N N N N N 175.996 2.831 161.596 -8.105 -1.451 0.138 H30 A1ICX 69 A1ICX H35 H22 H 0 1 N N N N N N 182.252 2.014 162.729 -9.794 3.187 -2.101 H35 A1ICX 70 A1ICX H33 H23 H 0 1 N N N N N N 180.835 0.918 162.608 -10.637 2.337 -0.784 H33 A1ICX 71 A1ICX H34 H24 H 0 1 N N N N N N 181.221 2.038 161.258 -10.454 4.106 -0.727 H34 A1ICX 72 A1ICX H37 H25 H 0 1 N N N N N N 180.049 5.425 164.957 -6.020 4.133 1.161 H37 A1ICX 73 A1ICX H36 H26 H 0 1 N N N N N N 181.919 3.821 164.161 -8.128 5.099 -0.041 H36 A1ICX 74 A1ICX H41 H27 H 0 1 N N N N N N 175.326 5.936 163.602 -5.254 -1.085 2.309 H41 A1ICX 75 A1ICX H42 H28 H 0 1 N N N N N N 174.803 5.047 162.131 -6.478 -2.199 1.653 H42 A1ICX 76 A1ICX H44 H29 H 0 1 N N N N N N 175.854 3.757 165.494 -4.487 0.222 -0.340 H44 A1ICX 77 A1ICX H45 H30 H 0 1 N N N N N N 174.717 5.106 165.834 -3.322 -0.366 0.872 H45 A1ICX 78 A1ICX H47 H31 H 0 1 N N N N N N 174.114 2.090 165.963 -3.511 -1.240 -2.048 H47 A1ICX 79 A1ICX H46 H32 H 0 1 N N N N N N 174.166 3.245 167.338 -2.214 -0.268 -1.310 H46 A1ICX 80 A1ICX H49 H33 H 0 1 N N N N N N 173.886 2.156 163.956 -6.110 -1.464 -1.216 H49 A1ICX 81 A1ICX H48 H34 H 0 1 N N N N N N 173.136 3.365 168.519 -0.599 -0.249 -0.754 H48 A1ICX 82 A1ICX H26 H35 H 0 1 N N N N N N 170.815 5.294 169.012 1.805 -2.128 -0.844 H26 A1ICX 83 A1ICX H22 H36 H 0 1 N N N N N N 174.547 8.814 166.600 0.772 -1.613 4.847 H22 A1ICX 84 A1ICX H23 H37 H 0 1 N N N N N N 172.084 8.870 166.661 -0.101 0.359 3.659 H23 A1ICX 85 A1ICX H09 H38 H 0 1 N N N N N N 162.784 2.791 172.497 9.642 -1.225 2.454 H09 A1ICX 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ICX N31 C30 DOUB N N 1 A1ICX N31 C32 SING N N 2 A1ICX C30 N40 SING N N 3 A1ICX C33 N34 SING N N 4 A1ICX C32 N34 SING Y N 5 A1ICX C32 C37 DOUB Y N 6 A1ICX N34 C35 SING Y N 7 A1ICX N40 C41 SING N N 8 A1ICX N40 C39 SING N N 9 A1ICX C41 C43 SING N N 10 A1ICX O42 C43 SING N N 11 A1ICX C37 C39 SING N N 12 A1ICX C37 C36 SING Y N 13 A1ICX C39 O38 DOUB N N 14 A1ICX C35 C36 DOUB Y N 15 A1ICX C29 C43 SING N N 16 A1ICX C29 C28 SING N N 17 A1ICX C43 C44 SING N N 18 A1ICX C28 N46 SING N N 19 A1ICX C44 C45 SING N N 20 A1ICX N46 C45 SING N N 21 A1ICX N46 C47 SING N N 22 A1ICX O27 C47 DOUB N N 23 A1ICX C47 C48 SING N N 24 A1ICX C22 C23 DOUB Y N 25 A1ICX C22 C21 SING Y N 26 A1ICX C23 C24 SING Y N 27 A1ICX C21 C20 DOUB Y N 28 A1ICX C24 C25 DOUB Y N 29 A1ICX C20 C25 SING Y N 30 A1ICX C25 C26 SING N N 31 A1ICX C48 C26 SING N N 32 A1ICX C48 C01 SING N N 33 A1ICX C26 C19 SING N N 34 A1ICX C01 C02 SING N N 35 A1ICX C19 N18 SING N N 36 A1ICX C02 N18 SING N N 37 A1ICX N18 C17 SING N N 38 A1ICX C17 O03 DOUB N N 39 A1ICX C17 C16 SING N N 40 A1ICX S04 C16 SING Y N 41 A1ICX S04 C13 SING Y N 42 A1ICX C16 C15 DOUB Y N 43 A1ICX C07 C08 DOUB Y N 44 A1ICX C07 C12 SING Y N 45 A1ICX C08 N09 SING Y N 46 A1ICX C15 C14 SING Y N 47 A1ICX C13 C12 SING N N 48 A1ICX C13 C14 DOUB Y N 49 A1ICX C12 C11 DOUB Y N 50 A1ICX N09 C10 DOUB Y N 51 A1ICX C11 C10 SING Y N 52 A1ICX C11 O06 SING N N 53 A1ICX O06 C05 SING N N 54 A1ICX C10 H10 SING N N 55 A1ICX C15 H15 SING N N 56 A1ICX C20 H20 SING N N 57 A1ICX C21 H21 SING N N 58 A1ICX C24 H24 SING N N 59 A1ICX C28 H28 SING N N 60 A1ICX C28 H29 SING N N 61 A1ICX C01 H01 SING N N 62 A1ICX C01 H02 SING N N 63 A1ICX C02 H03 SING N N 64 A1ICX C02 H04 SING N N 65 A1ICX C05 H07 SING N N 66 A1ICX C05 H05 SING N N 67 A1ICX C05 H06 SING N N 68 A1ICX C07 H08 SING N N 69 A1ICX C14 H14 SING N N 70 A1ICX C19 H2A SING N N 71 A1ICX C19 H19 SING N N 72 A1ICX C29 H3A SING N N 73 A1ICX C29 H3B SING N N 74 A1ICX C30 H30 SING N N 75 A1ICX C33 H35 SING N N 76 A1ICX C33 H33 SING N N 77 A1ICX C33 H34 SING N N 78 A1ICX C36 H37 SING N N 79 A1ICX C35 H36 SING N N 80 A1ICX C41 H41 SING N N 81 A1ICX C41 H42 SING N N 82 A1ICX C44 H44 SING N N 83 A1ICX C44 H45 SING N N 84 A1ICX C45 H47 SING N N 85 A1ICX C45 H46 SING N N 86 A1ICX O42 H49 SING N N 87 A1ICX C48 H48 SING N N 88 A1ICX C26 H26 SING N N 89 A1ICX C22 H22 SING N N 90 A1ICX C23 H23 SING N N 91 A1ICX C08 H09 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ICX InChI InChI 1.06 "InChI=1S/C36H38N6O5S/c1-39-16-11-27-32(39)38-23-42(34(27)44)22-36(46)13-18-40(19-14-36)33(43)25-12-17-41(21-28(25)24-6-4-3-5-7-24)35(45)31-9-8-30(48-31)26-10-15-37-20-29(26)47-2/h3-11,15-16,20,23,25,28,46H,12-14,17-19,21-22H2,1-2H3/t25-,28+/m1/s1" A1ICX InChIKey InChI 1.06 YORMIOZUKCOGFP-NAKRPHOHSA-N A1ICX SMILES_CANONICAL CACTVS 3.385 "COc1cnccc1c2sc(cc2)C(=O)N3CC[C@H]([C@@H](C3)c4ccccc4)C(=O)N5CCC(O)(CC5)CN6C=Nc7n(C)ccc7C6=O" A1ICX SMILES CACTVS 3.385 "COc1cnccc1c2sc(cc2)C(=O)N3CC[CH]([CH](C3)c4ccccc4)C(=O)N5CCC(O)(CC5)CN6C=Nc7n(C)ccc7C6=O" A1ICX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)C(=O)c6ccc(s6)c7ccncc7OC)O" A1ICX SMILES "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)C4CCN(CC4c5ccccc5)C(=O)c6ccc(s6)c7ccncc7OC)O" # _pdbx_chem_comp_identifier.comp_id A1ICX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[1-[(3~{R},4~{R})-1-[5-(3-methoxypyridin-4-yl)thiophen-2-yl]carbonyl-3-phenyl-piperidin-4-yl]carbonyl-4-oxidanyl-piperidin-4-yl]methyl]-7-methyl-pyrrolo[2,3-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ICX "Create component" 2024-06-04 PDBE A1ICX "Initial release" 2024-11-06 RCSB #