data_A1ID2 # _chem_comp.id A1ID2 _chem_comp.name "~{N}-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butyl]-9,10-bis(oxidanylidene)anthracene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-13 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ID2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FOA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ID2 C10 C1 C 0 1 Y N N N N N 26.809 24.119 15.020 4.752 0.928 0.329 C10 A1ID2 1 A1ID2 C21 C2 C 0 1 N N N N N N 25.260 17.485 13.121 -2.536 -0.204 0.619 C21 A1ID2 2 A1ID2 C22 C3 C 0 1 N N N N N N 25.895 18.155 11.912 -3.872 -0.950 0.606 C22 A1ID2 3 A1ID2 C23 C4 C 0 1 N N N N N N 27.011 17.332 11.289 -5.016 0.048 0.796 C23 A1ID2 4 A1ID2 C01 C5 C 0 1 Y N N N N N 25.442 28.357 12.466 9.535 -0.366 -1.031 C01 A1ID2 5 A1ID2 C03 C6 C 0 1 Y N N N N N 27.103 27.811 14.111 8.421 1.672 -0.419 C03 A1ID2 6 A1ID2 C05 C7 C 0 1 Y N N N N N 25.591 26.107 13.305 7.246 -0.440 -0.310 C05 A1ID2 7 A1ID2 C06 C8 C 0 1 Y N N N N N 24.986 27.050 12.473 8.389 -1.094 -0.757 C06 A1ID2 8 A1ID2 C07 C9 C 0 1 N N N N N N 25.091 24.722 13.300 6.012 -1.200 -0.014 C07 A1ID2 9 A1ID2 C09 C10 C 0 1 Y N N N N N 25.749 23.743 14.180 4.737 -0.469 0.158 C09 A1ID2 10 A1ID2 C11 C11 C 0 1 N N N N N N 27.333 25.502 15.012 6.045 1.651 0.335 C11 A1ID2 11 A1ID2 C13 C12 C 0 1 Y N N N N N 27.419 23.157 15.825 3.556 1.622 0.485 C13 A1ID2 12 A1ID2 C14 C13 C 0 1 Y N N N N N 26.983 21.845 15.791 2.354 0.939 0.472 C14 A1ID2 13 A1ID2 C15 C14 C 0 1 Y N N N N N 25.938 21.465 14.956 2.332 -0.445 0.303 C15 A1ID2 14 A1ID2 C16 C15 C 0 1 Y N N N N N 25.320 22.418 14.155 3.526 -1.152 0.150 C16 A1ID2 15 A1ID2 C17 C16 C 0 1 N N N N N N 25.544 20.029 14.859 1.040 -1.167 0.290 C17 A1ID2 16 A1ID2 C20 C17 C 0 1 N N N N N N 24.186 18.329 13.784 -1.392 -1.202 0.429 C20 A1ID2 17 A1ID2 C02 C18 C 0 1 Y N N N N N 26.492 28.736 13.279 9.551 1.006 -0.864 C02 A1ID2 18 A1ID2 C04 C19 C 0 1 Y N N N N N 26.660 26.488 14.132 7.262 0.957 -0.139 C04 A1ID2 19 A1ID2 C24 C20 C 0 1 N N S N N N 27.652 17.990 10.085 -6.351 -0.699 0.783 C24 A1ID2 20 A1ID2 C25 C21 C 0 1 N N S N N N 28.996 17.387 9.664 -7.527 0.281 0.967 C25 A1ID2 21 A1ID2 C27 C22 C 0 1 N N N N N N 29.291 15.393 8.513 -7.987 1.945 -0.539 C27 A1ID2 22 A1ID2 C30 C23 C 0 1 N N R N N N 29.277 17.680 8.172 -8.749 -0.109 0.127 C30 A1ID2 23 A1ID2 C31 C24 C 0 1 N N N N N N 28.087 18.473 7.630 -8.510 -1.389 -0.698 C31 A1ID2 24 A1ID2 N19 N1 N 0 1 N N N N N N 24.616 19.709 13.956 -0.113 -0.487 0.442 N19 A1ID2 25 A1ID2 N26 N2 N 0 1 N N N N N N 29.077 15.942 9.721 -7.142 1.602 0.443 N26 A1ID2 26 A1ID2 N29 N3 N 0 1 N N N N N N 29.493 16.349 7.612 -8.933 1.029 -0.786 N29 A1ID2 27 A1ID2 O08 O1 O 0 1 N N N N N N 24.162 24.391 12.574 6.044 -2.410 0.088 O08 A1ID2 28 A1ID2 O12 O2 O 0 1 N N N N N N 28.320 25.809 15.673 6.106 2.799 0.725 O12 A1ID2 29 A1ID2 O18 O3 O 0 1 N N N N N N 26.061 19.190 15.583 1.020 -2.374 0.143 O18 A1ID2 30 A1ID2 O28 O4 O 0 1 N N N N N N 29.333 14.181 8.287 -7.902 2.992 -1.151 O28 A1ID2 31 A1ID2 S32 S1 S 0 1 N N N N N N 26.653 17.883 8.567 -6.680 -1.418 -0.877 S32 A1ID2 32 A1ID2 H212 H1 H 0 0 N N N N N N 26.048 17.280 13.860 -2.520 0.526 -0.190 H212 A1ID2 33 A1ID2 H211 H2 H 0 0 N N N N N N 24.807 16.537 12.796 -2.416 0.309 1.574 H211 A1ID2 34 A1ID2 H221 H3 H 0 0 N N N N N N 25.116 18.318 11.153 -3.992 -1.463 -0.348 H221 A1ID2 35 A1ID2 H222 H4 H 0 0 N N N N N N 26.309 19.124 12.227 -3.888 -1.680 1.416 H222 A1ID2 36 A1ID2 H232 H5 H 0 0 N N N N N N 27.788 17.168 12.050 -4.895 0.561 1.750 H232 A1ID2 37 A1ID2 H231 H6 H 0 0 N N N N N N 26.595 16.363 10.975 -4.999 0.778 -0.013 H231 A1ID2 38 A1ID2 H011 H7 H 0 0 N N N N N N 24.974 29.085 11.820 10.422 -0.874 -1.379 H011 A1ID2 39 A1ID2 H031 H8 H 0 0 N N N N N N 27.923 28.115 14.744 8.441 2.744 -0.289 H031 A1ID2 40 A1ID2 H061 H9 H 0 0 N N N N N N 24.163 26.761 11.836 8.383 -2.165 -0.890 H061 A1ID2 41 A1ID2 H131 H10 H 0 0 N N N N N N 28.234 23.437 16.476 3.568 2.694 0.617 H131 A1ID2 42 A1ID2 H141 H11 H 0 0 N N N N N N 27.459 21.107 16.420 1.427 1.481 0.593 H141 A1ID2 43 A1ID2 H161 H12 H 0 0 N N N N N N 24.503 22.130 13.510 3.510 -2.224 0.020 H161 A1ID2 44 A1ID2 H201 H13 H 0 0 N N N N N N 23.955 17.902 14.771 -1.408 -1.932 1.239 H201 A1ID2 45 A1ID2 H202 H14 H 0 0 N N N N N N 23.282 18.313 13.157 -1.512 -1.715 -0.525 H202 A1ID2 46 A1ID2 H021 H15 H 0 0 N N N N N N 26.839 29.759 13.266 10.451 1.562 -1.081 H021 A1ID2 47 A1ID2 H241 H16 H 0 0 N N N N N N 27.786 19.063 10.285 -6.367 -1.473 1.550 H241 A1ID2 48 A1ID2 H251 H17 H 0 0 N N N N N N 29.796 17.836 10.271 -7.798 0.352 2.020 H251 A1ID2 49 A1ID2 H301 H18 H 0 0 N N N N N N 30.191 18.286 8.087 -9.624 -0.226 0.767 H301 A1ID2 50 A1ID2 H311 H19 H 0 0 N N N N N N 28.236 19.551 7.792 -8.860 -2.268 -0.159 H311 A1ID2 51 A1ID2 H312 H20 H 0 0 N N N N N N 27.952 18.279 6.556 -8.995 -1.316 -1.672 H312 A1ID2 52 A1ID2 H191 H21 H 0 0 N N N N N N 24.210 20.426 13.390 -0.097 0.475 0.559 H191 A1ID2 53 A1ID2 H261 H22 H 0 0 N N N N N N 28.984 15.412 10.564 -6.398 2.138 0.759 H261 A1ID2 54 A1ID2 H291 H23 H 0 0 N N N N N N 29.761 16.177 6.664 -9.628 1.105 -1.458 H291 A1ID2 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ID2 C02 C01 DOUB Y N 1 A1ID2 C03 C02 SING Y N 2 A1ID2 C04 C03 DOUB Y N 3 A1ID2 C05 C04 SING Y N 4 A1ID2 C06 C05 DOUB Y N 5 A1ID2 C07 C05 SING N N 6 A1ID2 O08 C07 DOUB N N 7 A1ID2 C09 C07 SING N N 8 A1ID2 C10 C09 DOUB Y N 9 A1ID2 O12 C11 DOUB N N 10 A1ID2 C11 C10 SING N N 11 A1ID2 C13 C10 SING Y N 12 A1ID2 C14 C13 DOUB Y N 13 A1ID2 C15 C14 SING Y N 14 A1ID2 C16 C15 DOUB Y N 15 A1ID2 C17 C15 SING N N 16 A1ID2 O18 C17 DOUB N N 17 A1ID2 N19 C17 SING N N 18 A1ID2 C20 N19 SING N N 19 A1ID2 C21 C20 SING N N 20 A1ID2 C22 C21 SING N N 21 A1ID2 C23 C22 SING N N 22 A1ID2 C24 C23 SING N N 23 A1ID2 C25 C24 SING N N 24 A1ID2 N26 C25 SING N N 25 A1ID2 C27 N26 SING N N 26 A1ID2 O28 C27 DOUB N N 27 A1ID2 N29 C27 SING N N 28 A1ID2 C30 N29 SING N N 29 A1ID2 C31 C30 SING N N 30 A1ID2 S32 C31 SING N N 31 A1ID2 C01 C06 SING Y N 32 A1ID2 C04 C11 SING N N 33 A1ID2 C09 C16 SING Y N 34 A1ID2 C24 S32 SING N N 35 A1ID2 C25 C30 SING N N 36 A1ID2 C21 H212 SING N N 37 A1ID2 C21 H211 SING N N 38 A1ID2 C22 H221 SING N N 39 A1ID2 C22 H222 SING N N 40 A1ID2 C23 H232 SING N N 41 A1ID2 C23 H231 SING N N 42 A1ID2 C01 H011 SING N N 43 A1ID2 C03 H031 SING N N 44 A1ID2 C06 H061 SING N N 45 A1ID2 C13 H131 SING N N 46 A1ID2 C14 H141 SING N N 47 A1ID2 C16 H161 SING N N 48 A1ID2 C20 H201 SING N N 49 A1ID2 C20 H202 SING N N 50 A1ID2 C02 H021 SING N N 51 A1ID2 C24 H241 SING N N 52 A1ID2 C25 H251 SING N N 53 A1ID2 C30 H301 SING N N 54 A1ID2 C31 H311 SING N N 55 A1ID2 C31 H312 SING N N 56 A1ID2 N19 H191 SING N N 57 A1ID2 N26 H261 SING N N 58 A1ID2 N29 H291 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ID2 InChI InChI 1.06 "InChI=1S/C24H23N3O4S/c28-21-14-5-1-2-6-15(14)22(29)17-11-13(8-9-16(17)21)23(30)25-10-4-3-7-19-20-18(12-32-19)26-24(31)27-20/h1-2,5-6,8-9,11,18-20H,3-4,7,10,12H2,(H,25,30)(H2,26,27,31)/t18-,19-,20-/m0/s1" A1ID2 InChIKey InChI 1.06 ISFDLFAYCAKKAR-UFYCRDLUSA-N A1ID2 SMILES_CANONICAL CACTVS 3.385 "O=C1N[C@H]2CS[C@@H](CCCCNC(=O)c3ccc4C(=O)c5ccccc5C(=O)c4c3)[C@H]2N1" A1ID2 SMILES CACTVS 3.385 "O=C1N[CH]2CS[CH](CCCCNC(=O)c3ccc4C(=O)c5ccccc5C(=O)c4c3)[CH]2N1" A1ID2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3ccc(cc3C2=O)C(=O)NCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5" A1ID2 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3ccc(cc3C2=O)C(=O)NCCCCC4C5C(CS4)NC(=O)N5" # _pdbx_chem_comp_identifier.comp_id A1ID2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butyl]-9,10-bis(oxidanylidene)anthracene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ID2 "Create component" 2024-06-13 PDBE A1ID2 "Initial release" 2025-01-15 RCSB #