data_A1ID6 # _chem_comp.id A1ID6 _chem_comp.name 1-fluoro-D-xylopyranose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H9 F O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-13 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 152.121 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ID6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FK2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ID6 C1 C1 C 0 1 N N R N N N -19.867 30.715 -4.031 1.454 0.638 0.299 C1 A1ID6 1 A1ID6 C2 C2 C 0 1 N N R N N N -21.232 30.561 -3.364 0.824 -0.738 0.529 C2 A1ID6 2 A1ID6 C3 C3 C 0 1 N N S N N N -22.258 31.278 -4.226 -0.519 -0.805 -0.203 C3 A1ID6 3 A1ID6 C4 C4 C 0 1 N N R N N N -21.860 32.743 -4.335 -1.415 0.335 0.291 C4 A1ID6 4 A1ID6 C5 C5 C 0 1 N N N N N N -20.492 32.794 -5.010 -0.698 1.669 0.070 C5 A1ID6 5 A1ID6 O2 O1 O 0 1 N N N N N N -21.605 29.189 -3.279 1.695 -1.753 0.024 O2 A1ID6 6 A1ID6 O3 O2 O 0 1 N N N N N N -23.557 31.155 -3.648 -1.149 -2.059 0.066 O3 A1ID6 7 A1ID6 O4 O3 O 0 1 N N N N N N -22.819 33.429 -5.132 -2.645 0.325 -0.436 O4 A1ID6 8 A1ID6 O5 O4 O 0 1 N N N N N N -19.543 32.098 -4.185 0.557 1.653 0.753 O5 A1ID6 9 A1ID6 F1 F1 F 0 1 N Y N N N N -19.885 30.128 -5.274 1.706 0.813 -1.066 F1 A1ID6 10 A1ID6 H1 H1 H 0 1 N N N N N N -19.115 30.231 -3.391 2.391 0.706 0.853 H1 A1ID6 11 A1ID6 H2 H2 H 0 1 N N N N N N -21.205 31.022 -2.366 0.666 -0.893 1.597 H2 A1ID6 12 A1ID6 H3 H3 H 0 1 N N N N N N -22.249 30.833 -5.232 -0.355 -0.702 -1.276 H3 A1ID6 13 A1ID6 H4 H4 H 0 1 N N N N N N -21.792 33.184 -3.330 -1.620 0.202 1.354 H4 A1ID6 14 A1ID6 H51 H5 H 0 1 N N N N N N -20.548 32.311 -5.997 -0.531 1.820 -0.996 H51 A1ID6 15 A1ID6 H52 H6 H 0 1 N N N N N N -20.178 33.841 -5.132 -1.313 2.481 0.460 H52 A1ID6 16 A1ID6 HO2 H7 H 0 1 N N N N N N -20.975 28.722 -2.743 2.567 -1.766 0.440 HO2 A1ID6 17 A1ID6 HO3 H8 H 0 1 N N N N N N -23.791 30.236 -3.587 -2.006 -2.170 -0.368 HO3 A1ID6 18 A1ID6 HO4 H9 H 0 1 N N N N N N -23.668 33.394 -4.707 -3.262 1.022 -0.174 HO4 A1ID6 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ID6 F1 C1 SING N N 1 A1ID6 O4 C4 SING N N 2 A1ID6 C5 C4 SING N N 3 A1ID6 C5 O5 SING N N 4 A1ID6 C4 C3 SING N N 5 A1ID6 C3 O3 SING N N 6 A1ID6 C3 C2 SING N N 7 A1ID6 O5 C1 SING N N 8 A1ID6 C1 C2 SING N N 9 A1ID6 C2 O2 SING N N 10 A1ID6 C1 H1 SING N N 11 A1ID6 C2 H2 SING N N 12 A1ID6 C3 H3 SING N N 13 A1ID6 C4 H4 SING N N 14 A1ID6 C5 H51 SING N N 15 A1ID6 C5 H52 SING N N 16 A1ID6 O2 HO2 SING N N 17 A1ID6 O3 HO3 SING N N 18 A1ID6 O4 HO4 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ID6 InChI InChI 1.06 "InChI=1S/C5H9FO4/c6-5-4(9)3(8)2(7)1-10-5/h2-5,7-9H,1H2/t2-,3+,4-,5+/m1/s1" A1ID6 InChIKey InChI 1.06 WHVNYMMWPUHYES-LECHCGJUSA-N A1ID6 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CO[C@H](F)[C@H](O)[C@H]1O" A1ID6 SMILES CACTVS 3.385 "O[CH]1CO[CH](F)[CH](O)[CH]1O" A1ID6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H]([C@H](O1)F)O)O)O" A1ID6 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)F)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1ID6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-fluoranyloxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ID6 "Create component" 2024-06-13 PDBE A1ID6 "Initial release" 2025-06-11 RCSB # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support A1ID6 "CARBOHYDRATE RING" pyranose PDB ? A1ID6 "CARBOHYDRATE ISOMER" D PDB ? #