data_A1IDI
#
_chem_comp.id A1IDI
_chem_comp.name "~{N}-[[4-[[7-(1,3-benzoxazol-2-ylsulfanyl)-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]methyl]phenyl]methyl]-~{N}-methyl-prop-2-yn-1-amine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H19 N7 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-06-06
_chem_comp.pdbx_modified_date 2025-03-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 441.508
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1IDI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9FJT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1IDI SAJ S1 S 0 1 N N N N N N 46.548 159.305 32.750 -3.679 1.544 -1.157 SAJ A1IDI 1
A1IDI C6 C1 C 0 1 Y N N N N N 48.099 159.374 31.950 -2.410 1.083 -0.025 C6 A1IDI 2
A1IDI N1 N1 N 0 1 Y N N N N N 48.830 160.409 32.335 -2.578 0.059 0.803 N1 A1IDI 3
A1IDI C2 C2 C 0 1 Y N N N N N 50.112 160.565 31.800 -1.633 -0.296 1.655 C2 A1IDI 4
A1IDI N3 N2 N 0 1 Y N N N N N 50.622 159.617 30.885 -0.481 0.335 1.735 N3 A1IDI 5
A1IDI C4 C3 C 0 1 Y N N N N N 49.816 158.585 30.522 -0.220 1.373 0.946 C4 A1IDI 6
A1IDI C5 C4 C 0 1 Y N N N N N 48.598 158.440 31.096 -1.190 1.789 0.017 C5 A1IDI 7
A1IDI NAQ N3 N 0 1 Y N N N N N 48.076 157.311 30.582 -0.692 2.838 -0.658 NAQ A1IDI 8
A1IDI NAR N4 N 0 1 Y N N N N N 49.056 156.728 29.753 0.495 3.110 -0.240 NAR A1IDI 9
A1IDI NAS N5 N 0 1 Y N N N N N 50.106 157.543 29.726 0.844 2.216 0.784 NAS A1IDI 10
A1IDI CAT C5 C 0 1 N N N N N N 51.379 157.275 28.991 2.107 2.183 1.525 CAT A1IDI 11
A1IDI CAU C6 C 0 1 Y N N N N N 51.385 156.006 28.256 3.089 1.294 0.806 CAU A1IDI 12
A1IDI CAZ C7 C 0 1 Y N N N N N 51.903 156.045 26.956 3.931 1.826 -0.152 CAZ A1IDI 13
A1IDI CAY C8 C 0 1 Y N N N N N 51.987 154.938 26.118 4.831 1.010 -0.811 CAY A1IDI 14
A1IDI CAV C9 C 0 1 Y N N N N N 50.931 154.740 28.715 3.150 -0.054 1.108 CAV A1IDI 15
A1IDI CAW C10 C 0 1 Y N N N N N 51.020 153.601 27.892 4.050 -0.870 0.449 CAW A1IDI 16
A1IDI CAX C11 C 0 1 Y N N N N N 51.551 153.686 26.606 4.888 -0.338 -0.513 CAX A1IDI 17
A1IDI CBA C12 C 0 1 N N N N N N 51.570 152.587 25.678 5.869 -1.228 -1.233 CBA A1IDI 18
A1IDI NBB N6 N 0 1 N N N N N N 52.827 152.255 25.197 7.136 -1.261 -0.490 NBB A1IDI 19
A1IDI CBF C13 C 0 1 N N N N N N 53.509 151.427 26.136 6.965 -1.913 0.815 CBF A1IDI 20
A1IDI CBC C14 C 0 1 N N N N N N 53.006 152.132 23.877 8.189 -1.921 -1.274 CBC A1IDI 21
A1IDI CBD C15 C 0 1 N N N N N N 54.096 151.260 23.398 9.489 -1.726 -0.612 CBD A1IDI 22
A1IDI CBE C16 C 0 1 N N N N N N 53.953 150.897 21.995 10.526 -1.571 -0.084 CBE A1IDI 23
A1IDI H2 H2 H 0 1 N N N N N N 50.715 161.414 32.087 -1.813 -1.135 2.311 H2 A1IDI 24
A1IDI HAT H3 H 0 1 N N N N N N 51.543 158.092 28.273 2.514 3.192 1.594 HAT A1IDI 25
A1IDI H2L H4 H 0 1 N N N N N N 52.203 157.257 29.720 1.931 1.794 2.528 H2L A1IDI 26
A1IDI HAZ H5 H 0 1 N N N N N N 52.259 156.993 26.581 3.886 2.880 -0.385 HAZ A1IDI 27
A1IDI HAY H6 H 0 1 N N N N N N 52.377 155.034 25.116 5.489 1.426 -1.560 HAY A1IDI 28
A1IDI HAV H7 H 0 1 N N N N N N 50.513 154.650 29.707 2.495 -0.469 1.860 HAV A1IDI 29
A1IDI HAW H8 H 0 1 N N N N N N 50.672 152.648 28.262 4.098 -1.923 0.685 HAW A1IDI 30
A1IDI H2M H9 H 0 1 N N N N N N 51.153 151.704 26.184 5.462 -2.237 -1.301 H2M A1IDI 31
A1IDI HBA H10 H 0 1 N N N N N N 50.934 152.852 24.820 6.045 -0.838 -2.235 HBA A1IDI 32
A1IDI H2O H12 H 0 1 N N N N N N 54.504 151.170 25.744 6.619 -2.937 0.667 H2O A1IDI 33
A1IDI HBF H13 H 0 1 N N N N N N 53.618 151.966 27.089 7.918 -1.924 1.344 HBF A1IDI 34
A1IDI H2P H14 H 0 1 N N N N N N 52.931 150.506 26.300 6.230 -1.363 1.402 H2P A1IDI 35
A1IDI H2N H15 H 0 1 N N N N N N 52.068 151.742 23.456 7.974 -2.987 -1.347 H2N A1IDI 36
A1IDI HBC H16 H 0 1 N N N N N N 53.196 153.140 23.479 8.222 -1.488 -2.274 HBC A1IDI 37
A1IDI HBE H17 H 0 1 N N N N N N 53.849 150.633 20.974 11.453 -1.432 0.389 HBE A1IDI 38
A1IDI C1 C17 C 0 1 Y N N N N N ? ? ? -4.899 0.337 -0.757 C1 A1IDI 39
A1IDI N2 N7 N 0 1 Y N N N N N ? ? ? -6.072 0.238 -1.329 N2 A1IDI 40
A1IDI C7 C18 C 0 1 Y N N N N N ? ? ? -6.744 -0.804 -0.770 C7 A1IDI 41
A1IDI C8 C19 C 0 1 Y N N N N N ? ? ? -5.895 -1.353 0.204 C8 A1IDI 42
A1IDI O1 O1 O 0 1 Y N N N N N ? ? ? -4.759 -0.620 0.177 O1 A1IDI 43
A1IDI C10 C20 C 0 1 Y N N N N N ? ? ? -6.316 -2.443 0.948 C10 A1IDI 44
A1IDI C11 C21 C 0 1 Y N N N N N ? ? ? -7.567 -2.984 0.731 C11 A1IDI 45
A1IDI C12 C22 C 0 1 Y N N N N N ? ? ? -8.408 -2.444 -0.230 C12 A1IDI 46
A1IDI C13 C23 C 0 1 Y N N N N N ? ? ? -8.006 -1.361 -0.980 C13 A1IDI 47
A1IDI H1 H1 H 0 1 N N N N N N ? ? ? -5.665 -2.869 1.698 H1 A1IDI 48
A1IDI H3 H37 H 0 1 N N N N N N ? ? ? -7.893 -3.833 1.312 H3 A1IDI 49
A1IDI H4 H18 H 0 1 N N N N N N ? ? ? -9.385 -2.876 -0.391 H4 A1IDI 50
A1IDI H5 H19 H 0 1 N N N N N N ? ? ? -8.665 -0.943 -1.727 H5 A1IDI 51
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1IDI C6 SAJ SING N N 1
A1IDI C6 N1 DOUB Y N 2
A1IDI C6 C5 SING Y N 3
A1IDI C2 N1 SING Y N 4
A1IDI C2 N3 DOUB Y N 5
A1IDI C4 N3 SING Y N 6
A1IDI C4 C5 DOUB Y N 7
A1IDI C4 NAS SING Y N 8
A1IDI C5 NAQ SING Y N 9
A1IDI NAQ NAR DOUB Y N 10
A1IDI NAS NAR SING Y N 11
A1IDI NAS CAT SING N N 12
A1IDI CAU CAT SING N N 13
A1IDI CAU CAZ SING Y N 14
A1IDI CAU CAV DOUB Y N 15
A1IDI CAZ CAY DOUB Y N 16
A1IDI CAX CAY SING Y N 17
A1IDI CAV CAW SING Y N 18
A1IDI CAX CAW DOUB Y N 19
A1IDI CAX CBA SING N N 20
A1IDI NBB CBA SING N N 21
A1IDI NBB CBF SING N N 22
A1IDI NBB CBC SING N N 23
A1IDI CBC CBD SING N N 24
A1IDI CBD CBE TRIP N N 25
A1IDI C2 H2 SING N N 26
A1IDI CAT HAT SING N N 27
A1IDI CAT H2L SING N N 28
A1IDI CAZ HAZ SING N N 29
A1IDI CAY HAY SING N N 30
A1IDI CAV HAV SING N N 31
A1IDI CAW HAW SING N N 32
A1IDI CBA H2M SING N N 33
A1IDI CBA HBA SING N N 34
A1IDI CBF H2O SING N N 35
A1IDI CBF HBF SING N N 36
A1IDI CBF H2P SING N N 37
A1IDI CBC H2N SING N N 38
A1IDI CBC HBC SING N N 39
A1IDI CBE HBE SING N N 40
A1IDI SAJ C1 SING N N 41
A1IDI C1 N2 DOUB Y N 42
A1IDI N2 C7 SING Y N 43
A1IDI C7 C8 SING Y N 44
A1IDI C8 O1 SING Y N 45
A1IDI O1 C1 SING Y N 46
A1IDI C8 C10 DOUB Y N 47
A1IDI C10 C11 SING Y N 48
A1IDI C11 C12 DOUB Y N 49
A1IDI C12 C13 SING Y N 50
A1IDI C13 C7 DOUB Y N 51
A1IDI C10 H1 SING N N 52
A1IDI C11 H3 SING N N 53
A1IDI C12 H4 SING N N 54
A1IDI C13 H5 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1IDI InChI InChI 1.06 "InChI=1S/C23H19N7OS/c1-3-12-29(2)13-16-8-10-17(11-9-16)14-30-21-20(27-28-30)22(25-15-24-21)32-23-26-18-6-4-5-7-19(18)31-23/h1,4-11,15H,12-14H2,2H3"
A1IDI InChIKey InChI 1.06 BQRUEJOUZILBFB-UHFFFAOYSA-N
A1IDI SMILES_CANONICAL CACTVS 3.385 "CN(CC#C)Cc1ccc(Cn2nnc3c(Sc4oc5ccccc5n4)ncnc23)cc1"
A1IDI SMILES CACTVS 3.385 "CN(CC#C)Cc1ccc(Cn2nnc3c(Sc4oc5ccccc5n4)ncnc23)cc1"
A1IDI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1ccc(cc1)Cn2c3c(c(ncn3)Sc4nc5ccccc5o4)nn2"
A1IDI SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1ccc(cc1)Cn2c3c(c(ncn3)Sc4nc5ccccc5o4)nn2"
#
_pdbx_chem_comp_identifier.comp_id A1IDI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{N}-[[4-[[7-(1,3-benzoxazol-2-ylsulfanyl)-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]methyl]phenyl]methyl]-~{N}-methyl-prop-2-yn-1-amine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1IDI "Create component" 2024-06-06 PDBE
A1IDI "Initial release" 2025-03-12 RCSB
#