data_A1IDP # _chem_comp.id A1IDP _chem_comp.name "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-[3-cyano-4-(trifluoromethyl)phenyl]ethyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 F3 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.477 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IDP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FKY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IDP C1 C1 C 0 1 N N S N N N -11.434 6.873 11.002 1.385 -1.985 -1.269 C1 A1IDP 1 A1IDP C2 C2 C 0 1 N N N N N N -13.410 8.257 10.578 0.698 -3.606 0.415 C2 A1IDP 2 A1IDP C3 C3 C 0 1 N N N N N N -14.024 9.558 10.132 1.829 -4.497 -0.031 C3 A1IDP 3 A1IDP C7 C4 C 0 1 Y N N N N N -10.229 11.213 11.985 -2.796 -0.759 -0.431 C7 A1IDP 4 A1IDP C8 C5 C 0 1 Y N N N N N -9.626 11.656 10.816 -2.846 -0.127 0.802 C8 A1IDP 5 A1IDP C9 C6 C 0 1 N N R N N N -8.494 13.544 11.875 -5.022 0.635 0.216 C9 A1IDP 6 A1IDP C10 C7 C 0 1 N N N N N N -9.643 14.528 12.051 -4.803 1.709 -0.878 C10 A1IDP 7 A1IDP C11 C8 C 0 1 N N N N N N -9.362 15.546 10.942 -6.244 1.996 -1.368 C11 A1IDP 8 A1IDP C12 C9 C 0 1 N N R N N N -7.852 15.763 11.039 -7.098 1.939 -0.084 C12 A1IDP 9 A1IDP C13 C10 C 0 1 N N N N N N -7.296 14.397 11.465 -6.321 1.074 0.923 C13 A1IDP 10 A1IDP C14 C11 C 0 1 Y N N N N N -9.832 10.978 9.626 -1.794 -0.264 1.696 C14 A1IDP 11 A1IDP C15 C12 C 0 1 Y N N N N N -10.641 9.858 9.606 -0.696 -1.029 1.358 C15 A1IDP 12 A1IDP C16 C13 C 0 1 Y N N N N N -11.058 6.670 12.465 2.050 -0.704 -0.835 C16 A1IDP 13 A1IDP C19 C14 C 0 1 Y N N N N N -10.357 6.235 15.139 3.257 1.662 -0.032 C19 A1IDP 14 A1IDP C20 C15 C 0 1 Y N N N N N -9.347 6.431 14.185 4.041 0.572 -0.414 C20 A1IDP 15 A1IDP C21 C16 C 0 1 Y N N N N N -9.727 6.644 12.860 3.426 -0.615 -0.816 C21 A1IDP 16 A1IDP C22 C17 C 0 1 N N N N N N -7.949 6.425 14.530 5.469 0.671 -0.392 C22 A1IDP 17 A1IDP F2 F1 F 0 1 N N N N N N -9.374 4.823 16.756 2.925 3.884 0.734 F2 A1IDP 18 A1IDP C23 C18 C 0 1 N N N N N N -10.002 5.981 16.584 3.911 2.948 0.404 C23 A1IDP 19 A1IDP F F2 F 0 1 N N N N N N -11.046 6.029 17.393 4.717 2.705 1.522 F A1IDP 20 A1IDP F1 F3 F 0 1 N N N N N N -9.197 6.890 17.085 4.698 3.447 -0.639 F1 A1IDP 21 A1IDP C18 C19 C 0 1 Y N N N N N -11.692 6.251 14.751 1.881 1.562 -0.061 C18 A1IDP 22 A1IDP C17 C20 C 0 1 Y N N N N N -12.034 6.470 13.428 1.278 0.382 -0.461 C17 A1IDP 23 A1IDP N2 N1 N 0 1 N N N N N N -6.829 6.422 14.765 6.602 0.750 -0.375 N2 A1IDP 24 A1IDP C C21 C 0 1 N N N N N N -10.305 6.591 10.014 0.600 -1.739 -2.560 C A1IDP 25 A1IDP N N2 N 0 1 N N N N N N -12.058 8.212 10.766 0.469 -2.440 -0.220 N A1IDP 26 A1IDP C4 C22 C 0 1 N N N N N N -14.782 10.211 11.239 1.794 -5.803 0.766 C4 A1IDP 27 A1IDP O O1 O 0 1 N N N N N N -14.117 7.284 10.786 -0.005 -3.939 1.345 O A1IDP 28 A1IDP C5 C23 C 0 1 Y N N N N N -11.248 9.403 10.777 -0.645 -1.662 0.123 C5 A1IDP 29 A1IDP C6 C24 C 0 1 Y N N N N N -11.040 10.094 11.962 -1.700 -1.529 -0.769 C6 A1IDP 30 A1IDP O1 O2 O 0 1 N N N N N N -8.791 12.748 10.695 -3.927 0.628 1.136 O1 A1IDP 31 A1IDP N1 N3 N 0 1 N N N N N N -7.455 16.782 12.019 -8.401 1.326 -0.374 N1 A1IDP 32 A1IDP H1 H1 H 0 1 N N N N N N -12.215 6.129 10.786 2.144 -2.747 -1.445 H1 A1IDP 33 A1IDP H2 H2 H 0 1 N N N N N N -13.224 10.235 9.798 1.722 -4.717 -1.093 H2 A1IDP 34 A1IDP H3 H3 H 0 1 N N N N N N -14.711 9.361 9.296 2.780 -3.992 0.141 H3 A1IDP 35 A1IDP H4 H4 H 0 1 N N N N N N -10.065 11.742 12.912 -3.615 -0.652 -1.127 H4 A1IDP 36 A1IDP H5 H5 H 0 1 N N N N N N -8.302 12.947 12.779 -5.147 -0.350 -0.234 H5 A1IDP 37 A1IDP H6 H6 H 0 1 N N N N N N -9.616 15.001 13.044 -4.353 2.606 -0.454 H6 A1IDP 38 A1IDP H7 H7 H 0 1 N N N N N N -10.616 14.036 11.905 -4.188 1.316 -1.688 H7 A1IDP 39 A1IDP H8 H8 H 0 1 N N N N N N -9.907 16.484 11.121 -6.303 2.985 -1.822 H8 A1IDP 40 A1IDP H9 H9 H 0 1 N N N N N N -9.640 15.143 9.957 -6.567 1.231 -2.075 H9 A1IDP 41 A1IDP H10 H10 H 0 1 N N N N N N -7.457 16.020 10.045 -7.238 2.943 0.316 H10 A1IDP 42 A1IDP H11 H11 H 0 1 N N N N N N -6.765 13.925 10.625 -6.911 0.199 1.197 H11 A1IDP 43 A1IDP H12 H12 H 0 1 N N N N N N -6.607 14.516 12.314 -6.083 1.658 1.812 H12 A1IDP 44 A1IDP H13 H13 H 0 1 N N N N N N -9.362 11.323 8.717 -1.834 0.229 2.656 H13 A1IDP 45 A1IDP H14 H14 H 0 1 N N N N N N -10.805 9.331 8.678 0.123 -1.135 2.054 H14 A1IDP 46 A1IDP H15 H15 H 0 1 N N N N N N -8.959 6.794 12.115 4.027 -1.463 -1.112 H15 A1IDP 47 A1IDP H16 H16 H 0 1 N N N N N N -12.467 6.092 15.486 1.273 2.404 0.234 H16 A1IDP 48 A1IDP H17 H17 H 0 1 N N N N N N -13.075 6.485 13.142 0.201 0.309 -0.482 H17 A1IDP 49 A1IDP H18 H18 H 0 1 N N N N N N -9.875 5.600 10.221 0.025 -2.631 -2.811 H18 A1IDP 50 A1IDP H19 H19 H 0 1 N N N N N N -10.702 6.611 8.988 -0.078 -0.898 -2.418 H19 A1IDP 51 A1IDP H20 H20 H 0 1 N N N N N N -9.525 7.359 10.120 1.294 -1.515 -3.370 H20 A1IDP 52 A1IDP H21 H21 H 0 1 N N N N N N -15.216 11.156 10.880 0.844 -6.308 0.593 H21 A1IDP 53 A1IDP H22 H22 H 0 1 N N N N N N -15.588 9.542 11.576 2.612 -6.447 0.443 H22 A1IDP 54 A1IDP H23 H23 H 0 1 N N N N N N -14.101 10.416 12.078 1.901 -5.583 1.828 H23 A1IDP 55 A1IDP H24 H24 H 0 1 N N N N N N -11.514 9.756 12.871 -1.661 -2.021 -1.729 H24 A1IDP 56 A1IDP H25 H25 H 0 1 N N N N N N -6.459 16.868 12.026 -8.915 1.871 -1.051 H25 A1IDP 57 A1IDP H26 H26 H 0 1 N N N N N N -7.863 17.660 11.770 -8.292 0.373 -0.685 H26 A1IDP 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IDP C15 C14 DOUB Y N 1 A1IDP C15 C5 SING Y N 2 A1IDP C14 C8 SING Y N 3 A1IDP C C1 SING N N 4 A1IDP C3 C2 SING N N 5 A1IDP C3 C4 SING N N 6 A1IDP C2 N SING N N 7 A1IDP C2 O DOUB N N 8 A1IDP O1 C8 SING N N 9 A1IDP O1 C9 SING N N 10 A1IDP N C5 SING N N 11 A1IDP N C1 SING N N 12 A1IDP C5 C6 DOUB Y N 13 A1IDP C8 C7 DOUB Y N 14 A1IDP C11 C12 SING N N 15 A1IDP C11 C10 SING N N 16 A1IDP C1 C16 SING N N 17 A1IDP C12 C13 SING N N 18 A1IDP C12 N1 SING N N 19 A1IDP C13 C9 SING N N 20 A1IDP C9 C10 SING N N 21 A1IDP C6 C7 SING Y N 22 A1IDP C16 C21 DOUB Y N 23 A1IDP C16 C17 SING Y N 24 A1IDP C21 C20 SING Y N 25 A1IDP C17 C18 DOUB Y N 26 A1IDP C20 C22 SING N N 27 A1IDP C20 C19 DOUB Y N 28 A1IDP C22 N2 TRIP N N 29 A1IDP C18 C19 SING Y N 30 A1IDP C19 C23 SING N N 31 A1IDP C23 F2 SING N N 32 A1IDP C23 F1 SING N N 33 A1IDP C23 F SING N N 34 A1IDP C1 H1 SING N N 35 A1IDP C3 H2 SING N N 36 A1IDP C3 H3 SING N N 37 A1IDP C7 H4 SING N N 38 A1IDP C9 H5 SING N N 39 A1IDP C10 H6 SING N N 40 A1IDP C10 H7 SING N N 41 A1IDP C11 H8 SING N N 42 A1IDP C11 H9 SING N N 43 A1IDP C12 H10 SING N N 44 A1IDP C13 H11 SING N N 45 A1IDP C13 H12 SING N N 46 A1IDP C14 H13 SING N N 47 A1IDP C15 H14 SING N N 48 A1IDP C21 H15 SING N N 49 A1IDP C18 H16 SING N N 50 A1IDP C17 H17 SING N N 51 A1IDP C H18 SING N N 52 A1IDP C H19 SING N N 53 A1IDP C H20 SING N N 54 A1IDP C4 H21 SING N N 55 A1IDP C4 H22 SING N N 56 A1IDP C4 H23 SING N N 57 A1IDP C6 H24 SING N N 58 A1IDP N1 H25 SING N N 59 A1IDP N1 H26 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IDP InChI InChI 1.06 "InChI=1S/C24H26F3N3O2/c1-3-23(31)30(15(2)16-4-11-22(24(25,26)27)17(12-16)14-28)19-6-9-20(10-7-19)32-21-8-5-18(29)13-21/h4,6-7,9-12,15,18,21H,3,5,8,13,29H2,1-2H3/t15-,18+,21+/m0/s1" A1IDP InChIKey InChI 1.06 TYGCFJODHANZAI-RRMPHLOHSA-N A1IDP SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N([C@@H](C)c1ccc(c(c1)C#N)C(F)(F)F)c2ccc(O[C@@H]3CC[C@@H](N)C3)cc2" A1IDP SMILES CACTVS 3.385 "CCC(=O)N([CH](C)c1ccc(c(c1)C#N)C(F)(F)F)c2ccc(O[CH]3CC[CH](N)C3)cc2" A1IDP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)O[C@@H]2CC[C@H](C2)N)[C@@H](C)c3ccc(c(c3)C#N)C(F)(F)F" A1IDP SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)OC2CCC(C2)N)C(C)c3ccc(c(c3)C#N)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1IDP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-[3-cyano-4-(trifluoromethyl)phenyl]ethyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IDP "Create component" 2024-06-06 PDBE A1IDP "Initial release" 2024-10-02 RCSB A1IDP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IDP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #