data_A1IEF # _chem_comp.id A1IEF _chem_comp.name "1-[[(2~{S})-1-[4-[ethyl(pyridin-4-ylmethyl)amino]-6-methyl-pyrimidin-2-yl]pyrrolidin-2-yl]methyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-13 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 369.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IEF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FOE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IEF C1 C1 C 0 1 N N N N N N 1.394 -13.107 8.988 2.130 2.572 -1.125 C1 A1IEF 1 A1IEF C2 C2 C 0 1 N N N N N N 1.420 -15.181 7.600 3.306 1.469 0.834 C2 A1IEF 2 A1IEF C3 C3 C 0 1 Y N N N N N 1.215 -16.489 8.328 3.943 0.209 0.307 C3 A1IEF 3 A1IEF N6 N1 N 0 1 N N N N N N 6.052 -21.469 7.613 -1.587 -3.774 -0.486 N6 A1IEF 4 A1IEF C7 C4 C 0 1 Y N N N N N 1.191 -16.547 9.711 4.867 0.260 -0.725 C7 A1IEF 5 A1IEF C8 C5 C 0 1 Y N N N N N 3.553 -14.236 8.428 0.869 1.230 0.519 C8 A1IEF 6 A1IEF C9 C6 C 0 1 Y N N N N N 4.296 -13.336 9.183 0.790 0.531 1.725 C9 A1IEF 7 A1IEF C10 C7 C 0 1 Y N N N N N 5.678 -13.466 9.182 -0.438 0.038 2.121 C10 A1IEF 8 A1IEF C11 C8 C 0 1 N N N N N N 6.553 -12.538 9.971 -0.572 -0.723 3.415 C11 A1IEF 9 A1IEF C12 C9 C 0 1 Y N N N N N 5.492 -15.254 7.780 -1.393 0.909 0.212 C12 A1IEF 10 A1IEF C13 C10 C 0 1 N N N N N N 7.503 -16.238 6.656 -2.800 2.536 -0.749 C13 A1IEF 11 A1IEF C14 C11 C 0 1 N N N N N N 7.701 -17.554 5.953 -4.233 2.795 -0.237 C14 A1IEF 12 A1IEF C15 C12 C 0 1 N N N N N N 6.393 -17.740 5.220 -4.891 1.392 -0.317 C15 A1IEF 13 A1IEF C16 C13 C 0 1 N N S N N N 5.328 -17.181 6.176 -3.706 0.468 0.058 C16 A1IEF 14 A1IEF O O1 O 0 1 N N N N N N 4.624 -20.850 5.973 -3.647 -3.508 -1.272 O A1IEF 15 A1IEF C18 C14 C 0 1 N N N N N N 5.304 -20.565 6.973 -2.688 -3.027 -0.700 C18 A1IEF 16 A1IEF N5 N2 N 0 1 N N N N N N 5.329 -19.318 7.474 -2.726 -1.747 -0.280 N5 A1IEF 17 A1IEF C17 C15 C 0 1 N N N N N N 4.510 -18.252 6.910 -3.923 -0.935 -0.512 C17 A1IEF 18 A1IEF N4 N3 N 0 1 N N N N N N 6.086 -16.258 7.044 -2.523 1.100 -0.564 N4 A1IEF 19 A1IEF N2 N4 N 0 1 Y N N N N N 6.302 -14.432 8.482 -1.497 0.241 1.352 N2 A1IEF 20 A1IEF N3 N5 N 0 1 Y N N N N N 4.150 -15.196 7.724 -0.234 1.398 -0.204 N3 A1IEF 21 A1IEF N N6 N 0 1 N N N N N N 2.175 -14.186 8.362 2.079 1.747 0.084 N A1IEF 22 A1IEF C C16 C 0 1 N N N N N N 1.355 -11.799 8.236 2.368 1.677 -2.343 C A1IEF 23 A1IEF C6 C17 C 0 1 Y N N N N N 0.998 -17.766 10.333 5.431 -0.916 -1.183 C6 A1IEF 24 A1IEF N1 N7 N 0 1 Y N N N N N 0.831 -18.916 9.668 5.098 -2.075 -0.650 N1 A1IEF 25 A1IEF C5 C18 C 0 1 Y N N N N N 0.855 -18.846 8.333 4.222 -2.161 0.332 C5 A1IEF 26 A1IEF C4 C19 C 0 1 Y N N N N N 1.042 -17.670 7.633 3.622 -1.027 0.845 C4 A1IEF 27 A1IEF H1 H1 H 0 1 N N N N N N 1.825 -12.912 9.981 1.186 3.104 -1.243 H1 A1IEF 28 A1IEF H2 H2 H 0 1 N N N N N N 0.359 -13.462 9.101 2.944 3.292 -1.039 H2 A1IEF 29 A1IEF H3 H3 H 0 1 N N N N N N 1.964 -15.387 6.666 3.065 1.340 1.890 H3 A1IEF 30 A1IEF H4 H4 H 0 1 N N N N N N 0.432 -14.759 7.364 3.999 2.303 0.719 H4 A1IEF 31 A1IEF H5 H5 H 0 1 N N N N N N 6.078 -22.415 7.290 -1.559 -4.695 -0.788 H5 A1IEF 32 A1IEF H6 H6 H 0 1 N N N N N N 6.585 -21.199 8.415 -0.821 -3.390 -0.029 H6 A1IEF 33 A1IEF H7 H7 H 0 1 N N N N N N 1.322 -15.650 10.297 5.143 1.207 -1.166 H7 A1IEF 34 A1IEF H8 H8 H 0 1 N N N N N N 3.812 -12.558 9.754 1.669 0.378 2.333 H8 A1IEF 35 A1IEF H9 H9 H 0 1 N N N N N N 7.607 -12.822 9.834 -0.796 -0.028 4.224 H9 A1IEF 36 A1IEF H10 H10 H 0 1 N N N N N N 6.403 -11.506 9.621 -1.378 -1.451 3.327 H10 A1IEF 37 A1IEF H11 H11 H 0 1 N N N N N N 6.291 -12.605 11.037 0.363 -1.241 3.630 H11 A1IEF 38 A1IEF H12 H12 H 0 1 N N N N N N 8.151 -16.166 7.542 -2.732 2.794 -1.806 H12 A1IEF 39 A1IEF H13 H13 H 0 1 N N N N N N 7.712 -15.397 5.979 -2.087 3.128 -0.176 H13 A1IEF 40 A1IEF H14 H14 H 0 1 N N N N N N 7.871 -18.367 6.674 -4.216 3.154 0.792 H14 A1IEF 41 A1IEF H15 H15 H 0 1 N N N N N N 8.546 -17.505 5.250 -4.751 3.504 -0.882 H15 A1IEF 42 A1IEF H16 H16 H 0 1 N N N N N N 6.396 -17.181 4.273 -5.702 1.299 0.405 H16 A1IEF 43 A1IEF H17 H17 H 0 1 N N N N N N 6.211 -18.805 5.016 -5.244 1.184 -1.327 H17 A1IEF 44 A1IEF H18 H18 H 0 1 N N N N N N 4.626 -16.586 5.574 -3.589 0.423 1.141 H18 A1IEF 45 A1IEF H19 H19 H 0 1 N N N N N N 5.924 -19.117 8.252 -1.961 -1.363 0.177 H19 A1IEF 46 A1IEF H20 H20 H 0 1 N N N N N N 3.955 -17.768 7.728 -4.778 -1.399 -0.021 H20 A1IEF 47 A1IEF H21 H21 H 0 1 N N N N N N 3.799 -18.697 6.198 -4.113 -0.866 -1.584 H21 A1IEF 48 A1IEF H22 H22 H 0 1 N N N N N N 0.747 -11.072 8.795 3.312 1.146 -2.225 H22 A1IEF 49 A1IEF H23 H23 H 0 1 N N N N N N 2.378 -11.411 8.123 1.554 0.957 -2.429 H23 A1IEF 50 A1IEF H24 H24 H 0 1 N N N N N N 0.912 -11.961 7.242 2.406 2.291 -3.243 H24 A1IEF 51 A1IEF H25 H25 H 0 1 N N N N N N 0.981 -17.792 11.413 6.152 -0.885 -1.986 H25 A1IEF 52 A1IEF H26 H26 H 0 1 N N N N N N 0.721 -19.759 7.771 3.974 -3.129 0.743 H26 A1IEF 53 A1IEF H27 H27 H 0 1 N N N N N N 1.053 -17.674 6.553 2.909 -1.104 1.653 H27 A1IEF 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IEF C15 C14 SING N N 1 A1IEF C15 C16 SING N N 2 A1IEF C14 C13 SING N N 3 A1IEF O C18 DOUB N N 4 A1IEF C16 C17 SING N N 5 A1IEF C16 N4 SING N N 6 A1IEF C13 N4 SING N N 7 A1IEF C17 N5 SING N N 8 A1IEF C18 N5 SING N N 9 A1IEF C18 N6 SING N N 10 A1IEF N4 C12 SING N N 11 A1IEF C2 C3 SING N N 12 A1IEF C2 N SING N N 13 A1IEF C4 C3 DOUB Y N 14 A1IEF C4 C5 SING Y N 15 A1IEF N3 C12 DOUB Y N 16 A1IEF N3 C8 SING Y N 17 A1IEF C12 N2 SING Y N 18 A1IEF C C1 SING N N 19 A1IEF C3 C7 SING Y N 20 A1IEF C5 N1 DOUB Y N 21 A1IEF N C8 SING N N 22 A1IEF N C1 SING N N 23 A1IEF C8 C9 DOUB Y N 24 A1IEF N2 C10 DOUB Y N 25 A1IEF C10 C9 SING Y N 26 A1IEF C10 C11 SING N N 27 A1IEF N1 C6 SING Y N 28 A1IEF C7 C6 DOUB Y N 29 A1IEF C1 H1 SING N N 30 A1IEF C1 H2 SING N N 31 A1IEF C2 H3 SING N N 32 A1IEF C2 H4 SING N N 33 A1IEF N6 H5 SING N N 34 A1IEF N6 H6 SING N N 35 A1IEF C7 H7 SING N N 36 A1IEF C9 H8 SING N N 37 A1IEF C11 H9 SING N N 38 A1IEF C11 H10 SING N N 39 A1IEF C11 H11 SING N N 40 A1IEF C13 H12 SING N N 41 A1IEF C13 H13 SING N N 42 A1IEF C14 H14 SING N N 43 A1IEF C14 H15 SING N N 44 A1IEF C15 H16 SING N N 45 A1IEF C15 H17 SING N N 46 A1IEF C16 H18 SING N N 47 A1IEF N5 H19 SING N N 48 A1IEF C17 H20 SING N N 49 A1IEF C17 H21 SING N N 50 A1IEF C H22 SING N N 51 A1IEF C H23 SING N N 52 A1IEF C H24 SING N N 53 A1IEF C6 H25 SING N N 54 A1IEF C5 H26 SING N N 55 A1IEF C4 H27 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IEF InChI InChI 1.06 "InChI=1S/C19H27N7O/c1-3-25(13-15-6-8-21-9-7-15)17-11-14(2)23-19(24-17)26-10-4-5-16(26)12-22-18(20)27/h6-9,11,16H,3-5,10,12-13H2,1-2H3,(H3,20,22,27)/t16-/m0/s1" A1IEF InChIKey InChI 1.06 HHACEXLLNHJLFT-INIZCTEOSA-N A1IEF SMILES_CANONICAL CACTVS 3.385 "CCN(Cc1ccncc1)c2cc(C)nc(n2)N3CCC[C@H]3CNC(N)=O" A1IEF SMILES CACTVS 3.385 "CCN(Cc1ccncc1)c2cc(C)nc(n2)N3CCC[CH]3CNC(N)=O" A1IEF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(Cc1ccncc1)c2cc(nc(n2)N3CCC[C@H]3CNC(=O)N)C" A1IEF SMILES "OpenEye OEToolkits" 2.0.7 "CCN(Cc1ccncc1)c2cc(nc(n2)N3CCCC3CNC(=O)N)C" # _pdbx_chem_comp_identifier.comp_id A1IEF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[(2~{S})-1-[4-[ethyl(pyridin-4-ylmethyl)amino]-6-methyl-pyrimidin-2-yl]pyrrolidin-2-yl]methyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IEF "Create component" 2024-06-13 PDBE A1IEF "Initial release" 2025-09-03 RCSB #