data_A1IEG # _chem_comp.id A1IEG _chem_comp.name "(2S)-1-[4-[[(3S)-1,1-bis(oxidanylidene)thiolan-3-yl]methyl-methyl-amino]-6-methyl-pyrimidin-2-yl]-N-methyl-pyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-13 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IEG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FOC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IEG C1 C1 C 0 1 N N N N N N 1.715 81.718 168.379 -3.983 -1.563 0.625 C1 A1IEG 1 A1IEG C2 C2 C 0 1 N N S N N N 0.556 81.388 167.437 -3.701 -0.451 -0.352 C2 A1IEG 2 A1IEG C3 C3 C 0 1 N N N N N N -0.674 82.255 167.727 -4.482 -0.692 -1.661 C3 A1IEG 3 A1IEG C7 C4 C 0 1 Y N N N N N 0.574 76.753 166.242 -1.877 2.811 0.715 C7 A1IEG 4 A1IEG C8 C5 C 0 1 N N N N N N -0.124 75.429 166.205 -2.725 3.844 1.410 C8 A1IEG 5 A1IEG C9 C6 C 0 1 Y N N N N N 1.809 76.939 165.642 -0.534 3.046 0.490 C9 A1IEG 6 A1IEG C10 C7 C 0 1 Y N N N N N 2.385 78.201 165.719 0.216 2.060 -0.153 C10 A1IEG 7 A1IEG C11 C8 C 0 1 N N N N N N 4.358 77.464 164.350 2.240 3.449 0.112 C11 A1IEG 8 A1IEG C12 C9 C 0 1 N N N N N N 4.248 79.837 165.175 2.319 1.260 -1.170 C12 A1IEG 9 A1IEG C13 C10 C 0 1 N N S N N N 5.430 79.970 166.117 2.904 0.213 -0.220 C13 A1IEG 10 A1IEG C14 C11 C 0 1 N N N N N N 5.292 79.176 167.422 3.990 0.851 0.664 C14 A1IEG 11 A1IEG C15 C12 C 0 1 N N N N N N 6.486 79.542 168.293 4.787 -0.272 1.356 C15 A1IEG 12 A1IEG C16 C13 C 0 1 N N N N N N 5.592 81.394 166.642 3.597 -0.912 -1.031 C16 A1IEG 13 A1IEG O2 O1 O 0 1 N N N N N N 6.211 81.997 169.150 5.949 -1.960 -0.343 O2 A1IEG 14 A1IEG S S1 S 0 1 N N N N N N 6.714 81.255 168.026 4.672 -1.705 0.224 S A1IEG 15 A1IEG O1 O2 O 0 1 N N N N N N 8.063 81.514 167.605 3.956 -2.753 0.863 O1 A1IEG 16 A1IEG N4 N1 N 0 1 N N N N N N 3.674 78.495 165.125 1.566 2.253 -0.399 N4 A1IEG 17 A1IEG N2 N2 N 0 1 Y N N N N N -0.036 77.734 166.928 -2.409 1.665 0.317 N2 A1IEG 18 A1IEG N3 N3 N 0 1 Y N N N N N 1.783 79.205 166.358 -0.383 0.933 -0.525 N3 A1IEG 19 A1IEG C6 C14 C 0 1 Y N N N N N 0.596 78.926 166.922 -1.674 0.748 -0.295 C6 A1IEG 20 A1IEG N1 N4 N 0 1 N N N N N N 0.037 80.016 167.552 -2.267 -0.437 -0.695 N1 A1IEG 21 A1IEG C5 C15 C 0 1 N N N N N N -1.300 79.993 168.163 -2.130 -0.632 -2.154 C5 A1IEG 22 A1IEG C4 C16 C 0 1 N N N N N N -1.493 81.402 168.679 -3.427 -1.365 -2.578 C4 A1IEG 23 A1IEG O O3 O 0 1 N N N N N N 2.414 82.705 168.162 -3.081 -2.277 1.009 O A1IEG 24 A1IEG N N5 N 0 1 N N N N N N 1.907 80.910 169.417 -5.238 -1.762 1.077 N A1IEG 25 A1IEG C C17 C 0 1 N N N N N N 2.951 81.153 170.396 -5.512 -2.843 2.027 C A1IEG 26 A1IEG H1 H1 H 0 1 N N N N N N 0.880 81.572 166.402 -3.989 0.507 0.081 H1 A1IEG 27 A1IEG H2 H2 H 0 1 N N N N N N -0.383 83.204 168.201 -5.326 -1.360 -1.489 H2 A1IEG 28 A1IEG H3 H3 H 0 1 N N N N N N -1.235 82.463 166.804 -4.818 0.253 -2.088 H3 A1IEG 29 A1IEG H4 H4 H 0 1 N N N N N N -1.063 75.493 166.775 -2.699 3.671 2.486 H4 A1IEG 30 A1IEG H5 H5 H 0 1 N N N N N N -0.346 75.161 165.162 -2.337 4.839 1.192 H5 A1IEG 31 A1IEG H6 H6 H 0 1 N N N N N N 0.524 74.660 166.651 -3.753 3.769 1.055 H6 A1IEG 32 A1IEG H7 H7 H 0 1 N N N N N N 2.308 76.129 165.131 -0.076 3.973 0.803 H7 A1IEG 33 A1IEG H8 H8 H 0 1 N N N N N N 3.797 76.520 164.418 2.178 4.246 -0.629 H8 A1IEG 34 A1IEG H9 H9 H 0 1 N N N N N N 4.421 77.778 163.298 1.758 3.772 1.034 H9 A1IEG 35 A1IEG H10 H10 H 0 1 N N N N N N 5.372 77.317 164.750 3.287 3.219 0.311 H10 A1IEG 36 A1IEG H11 H11 H 0 1 N N N N N N 4.581 80.108 164.162 3.128 1.755 -1.707 H11 A1IEG 37 A1IEG H12 H12 H 0 1 N N N N N N 3.464 80.536 165.503 1.654 0.773 -1.883 H12 A1IEG 38 A1IEG H13 H13 H 0 1 N N N N N N 6.351 79.663 165.599 2.114 -0.208 0.403 H13 A1IEG 39 A1IEG H14 H14 H 0 1 N N N N N N 4.355 79.446 167.932 4.660 1.450 0.047 H14 A1IEG 40 A1IEG H15 H15 H 0 1 N N N N N N 5.296 78.097 167.210 3.523 1.486 1.417 H15 A1IEG 41 A1IEG H16 H16 H 0 1 N N N N N N 6.271 79.339 169.353 5.827 0.026 1.484 H16 A1IEG 42 A1IEG H17 H17 H 0 1 N N N N N N 7.379 78.978 167.985 4.341 -0.514 2.321 H17 A1IEG 43 A1IEG H18 H18 H 0 1 N N N N N N 6.017 82.046 165.865 2.863 -1.620 -1.415 H18 A1IEG 44 A1IEG H19 H19 H 0 1 N N N N N N 4.623 81.797 166.970 4.193 -0.493 -1.842 H19 A1IEG 45 A1IEG H20 H20 H 0 1 N N N N N N -2.067 79.742 167.415 -2.055 0.330 -2.660 H20 A1IEG 46 A1IEG H21 H21 H 0 1 N N N N N N -1.340 79.266 168.988 -1.257 -1.247 -2.373 H21 A1IEG 47 A1IEG H22 H22 H 0 1 N N N N N N -1.119 81.496 169.709 -3.357 -2.433 -2.374 H22 A1IEG 48 A1IEG H23 H23 H 0 1 N N N N N N -2.555 81.689 168.647 -3.651 -1.184 -3.629 H23 A1IEG 49 A1IEG H24 H24 H 0 1 N N N N N N 1.315 80.112 169.527 -5.959 -1.188 0.773 H24 A1IEG 50 A1IEG H25 H25 H 0 1 N N N N N N 2.927 80.364 171.162 -6.573 -2.847 2.275 H25 A1IEG 51 A1IEG H26 H26 H 0 1 N N N N N N 3.931 81.149 169.896 -5.240 -3.798 1.578 H26 A1IEG 52 A1IEG H27 H27 H 0 1 N N N N N N 2.787 82.131 170.872 -4.927 -2.687 2.933 H27 A1IEG 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IEG C11 N4 SING N N 1 A1IEG N4 C12 SING N N 2 A1IEG N4 C10 SING N N 3 A1IEG C12 C13 SING N N 4 A1IEG C9 C10 DOUB Y N 5 A1IEG C9 C7 SING Y N 6 A1IEG C10 N3 SING Y N 7 A1IEG C13 C16 SING N N 8 A1IEG C13 C14 SING N N 9 A1IEG C8 C7 SING N N 10 A1IEG C7 N2 DOUB Y N 11 A1IEG N3 C6 DOUB Y N 12 A1IEG C16 S SING N N 13 A1IEG C6 N2 SING Y N 14 A1IEG C6 N1 SING N N 15 A1IEG C14 C15 SING N N 16 A1IEG C2 N1 SING N N 17 A1IEG C2 C3 SING N N 18 A1IEG C2 C1 SING N N 19 A1IEG N1 C5 SING N N 20 A1IEG O1 S DOUB N N 21 A1IEG C3 C4 SING N N 22 A1IEG S C15 SING N N 23 A1IEG S O2 DOUB N N 24 A1IEG O C1 DOUB N N 25 A1IEG C5 C4 SING N N 26 A1IEG C1 N SING N N 27 A1IEG N C SING N N 28 A1IEG C2 H1 SING N N 29 A1IEG C3 H2 SING N N 30 A1IEG C3 H3 SING N N 31 A1IEG C8 H4 SING N N 32 A1IEG C8 H5 SING N N 33 A1IEG C8 H6 SING N N 34 A1IEG C9 H7 SING N N 35 A1IEG C11 H8 SING N N 36 A1IEG C11 H9 SING N N 37 A1IEG C11 H10 SING N N 38 A1IEG C12 H11 SING N N 39 A1IEG C12 H12 SING N N 40 A1IEG C13 H13 SING N N 41 A1IEG C14 H14 SING N N 42 A1IEG C14 H15 SING N N 43 A1IEG C15 H16 SING N N 44 A1IEG C15 H17 SING N N 45 A1IEG C16 H18 SING N N 46 A1IEG C16 H19 SING N N 47 A1IEG C5 H20 SING N N 48 A1IEG C5 H21 SING N N 49 A1IEG C4 H22 SING N N 50 A1IEG C4 H23 SING N N 51 A1IEG N H24 SING N N 52 A1IEG C H25 SING N N 53 A1IEG C H26 SING N N 54 A1IEG C H27 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IEG InChI InChI 1.06 "InChI=1S/C17H27N5O3S/c1-12-9-15(21(3)10-13-6-8-26(24,25)11-13)20-17(19-12)22-7-4-5-14(22)16(23)18-2/h9,13-14H,4-8,10-11H2,1-3H3,(H,18,23)/t13-,14-/m0/s1" A1IEG InChIKey InChI 1.06 FPDVOQXTUVFQHW-KBPBESRZSA-N A1IEG SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@@H]1CCCN1c2nc(C)cc(n2)N(C)C[C@@H]3CC[S](=O)(=O)C3" A1IEG SMILES CACTVS 3.385 "CNC(=O)[CH]1CCCN1c2nc(C)cc(n2)N(C)C[CH]3CC[S](=O)(=O)C3" A1IEG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCC[C@H]2C(=O)NC)N(C)C[C@@H]3CCS(=O)(=O)C3" A1IEG SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCCC2C(=O)NC)N(C)CC3CCS(=O)(=O)C3" # _pdbx_chem_comp_identifier.comp_id A1IEG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-[4-[[(3~{S})-1,1-bis(oxidanylidene)thiolan-3-yl]methyl-methyl-amino]-6-methyl-pyrimidin-2-yl]-~{N}-methyl-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IEG "Create component" 2024-06-13 PDBE A1IEG "Modify name" 2024-06-26 PDBE A1IEG "Initial release" 2025-09-03 RCSB #