data_A1IFS # _chem_comp.id A1IFS _chem_comp.name "(2S)-1-[4-[[(3R)-1,1-bis(oxidanylidene)thiolan-3-yl]methyl-methyl-amino]-6-methyl-pyrimidin-2-yl]-N-methyl-pyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-26 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IFS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FOC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IFS C1 C1 C 0 1 N N N N N N 22.397 70.445 119.883 -4.341 -1.283 -0.497 C1 A1IFS 1 A1IFS C2 C2 C 0 1 N N S N N N 23.648 70.072 120.676 -3.894 -0.100 0.322 C2 A1IFS 2 A1IFS C3 C3 C 0 1 N N N N N N 24.891 70.808 120.153 -5.101 0.808 0.636 C3 A1IFS 3 A1IFS C7 C4 C 0 1 Y N N N N N 23.101 65.396 121.668 -0.369 0.072 1.952 C7 A1IFS 4 A1IFS C8 C5 C 0 1 N N N N N N 23.550 63.980 121.463 -0.202 -0.684 3.244 C8 A1IFS 5 A1IFS C9 C6 C 0 1 Y N N N N N 21.965 65.696 122.404 0.693 0.768 1.409 C9 A1IFS 6 A1IFS C10 C7 C 0 1 Y N N N N N 21.575 67.027 122.504 0.495 1.457 0.209 C10 A1IFS 7 A1IFS C11 C8 C 0 1 N N N N N N 19.752 66.466 124.151 1.285 2.974 -1.570 C11 A1IFS 8 A1IFS C12 C9 C 0 1 N N N N N N 19.805 68.754 123.139 2.875 2.113 0.211 C12 A1IFS 9 A1IFS C13 C10 C 0 1 N N R N N N 19.253 69.042 121.747 3.656 0.957 -0.417 C13 A1IFS 10 A1IFS C14 C11 C 0 1 N N N N N N 18.236 67.998 121.286 5.103 0.955 0.107 C14 A1IFS 11 A1IFS C15 C12 C 0 1 N N N N N N 17.578 68.546 120.028 5.760 -0.391 -0.263 C15 A1IFS 12 A1IFS C16 C13 C 0 1 N N N N N N 18.528 70.388 121.683 3.029 -0.397 0.002 C16 A1IFS 13 A1IFS O2 O1 O 0 1 N N N N N N 15.968 70.378 120.969 4.487 -2.509 0.727 O2 A1IFS 14 A1IFS S S1 S 0 1 N N N N N N 17.281 70.227 120.402 4.379 -1.587 -0.349 S A1IFS 15 A1IFS O1 O2 O 0 1 N N N N N N 17.619 71.043 119.269 4.253 -2.065 -1.681 O1 A1IFS 16 A1IFS N4 N1 N 0 1 N N N N N N 20.405 67.430 123.270 1.532 2.168 -0.372 N4 A1IFS 17 A1IFS N2 N2 N 0 1 Y N N N N N 23.793 66.347 121.014 -1.535 0.073 1.322 N2 A1IFS 18 A1IFS N3 N3 N 0 1 Y N N N N N 22.284 67.999 121.924 -0.703 1.418 -0.366 N3 A1IFS 19 A1IFS C6 C14 C 0 1 Y N N N N N 23.362 67.612 121.204 -1.693 0.730 0.182 C6 A1IFS 20 A1IFS N1 N4 N 0 1 N N N N N N 24.028 68.654 120.588 -2.926 0.705 -0.446 N1 A1IFS 21 A1IFS C5 C15 C 0 1 N N N N N N 25.293 68.485 119.862 -3.468 2.072 -0.601 C5 A1IFS 22 A1IFS C4 C16 C 0 1 N N N N N N 25.513 69.825 119.193 -5.007 1.905 -0.456 C4 A1IFS 23 A1IFS O O3 O 0 1 N N N N N N 21.688 71.372 120.259 -3.896 -1.451 -1.613 O A1IFS 24 A1IFS N N5 N 0 1 N N N N N N 22.145 69.742 118.786 -5.231 -2.157 0.012 N A1IFS 25 A1IFS C C17 C 0 1 N N N N N N 21.101 70.125 117.854 -5.661 -3.311 -0.782 C A1IFS 26 A1IFS H1 H1 H 0 1 N N N N N N 23.494 70.347 121.730 -3.437 -0.443 1.250 H1 A1IFS 27 A1IFS H2 H2 H 0 1 N N N N N N 25.582 71.043 120.976 -6.035 0.253 0.546 H2 A1IFS 28 A1IFS H3 H3 H 0 1 N N N N N N 24.608 71.736 119.635 -5.008 1.242 1.632 H3 A1IFS 29 A1IFS H4 H4 H 0 1 N N N N N N 24.411 63.963 120.779 -0.442 -0.030 4.082 H4 A1IFS 30 A1IFS H5 H5 H 0 1 N N N N N N 23.842 63.544 122.430 -0.873 -1.544 3.251 H5 A1IFS 31 A1IFS H6 H6 H 0 1 N N N N N N 22.726 63.393 121.030 0.828 -1.028 3.334 H6 A1IFS 32 A1IFS H7 H7 H 0 1 N N N N N N 21.397 64.915 122.888 1.654 0.781 1.900 H7 A1IFS 33 A1IFS H8 H8 H 0 1 N N N N N N 18.893 66.943 124.645 1.000 3.984 -1.276 H8 A1IFS 34 A1IFS H9 H9 H 0 1 N N N N N N 19.404 65.606 123.560 2.191 3.014 -2.174 H9 A1IFS 35 A1IFS H10 H10 H 0 1 N N N N N N 20.467 66.122 124.912 0.480 2.525 -2.152 H10 A1IFS 36 A1IFS H11 H11 H 0 1 N N N N N N 20.572 69.507 123.371 2.798 1.958 1.287 H11 A1IFS 37 A1IFS H12 H12 H 0 1 N N N N N N 18.981 68.835 123.863 3.394 3.052 0.015 H12 A1IFS 38 A1IFS H13 H13 H 0 1 N N N N N N 20.089 69.059 121.032 3.652 1.050 -1.503 H13 A1IFS 39 A1IFS H14 H14 H 0 1 N N N N N N 17.480 67.836 122.068 5.660 1.772 -0.351 H14 A1IFS 40 A1IFS H15 H15 H 0 1 N N N N N N 18.744 67.048 121.064 5.102 1.074 1.190 H15 A1IFS 41 A1IFS H16 H16 H 0 1 N N N N N N 16.635 68.020 119.819 6.257 -0.316 -1.230 H16 A1IFS 42 A1IFS H17 H17 H 0 1 N N N N N N 18.250 68.451 119.162 6.471 -0.688 0.507 H17 A1IFS 43 A1IFS H18 H18 H 0 1 N N N N N N 19.236 71.190 121.427 2.781 -0.397 1.064 H18 A1IFS 44 A1IFS H19 H19 H 0 1 N N N N N N 18.054 70.612 122.650 2.148 -0.618 -0.599 H19 A1IFS 45 A1IFS H20 H20 H 0 1 N N N N N N 25.210 67.683 119.114 -3.084 2.724 0.183 H20 A1IFS 46 A1IFS H21 H21 H 0 1 N N N N N N 26.115 68.255 120.556 -3.217 2.470 -1.584 H21 A1IFS 47 A1IFS H22 H22 H 0 1 N N N N N N 26.586 70.028 119.064 -5.453 1.564 -1.390 H22 A1IFS 48 A1IFS H23 H23 H 0 1 N N N N N N 25.013 69.862 118.214 -5.470 2.833 -0.121 H23 A1IFS 49 A1IFS H24 H24 H 0 1 N N N N N N 22.690 68.925 118.596 -5.587 -2.023 0.904 H24 A1IFS 50 A1IFS H25 H25 H 0 1 N N N N N N 21.069 69.405 117.023 -6.378 -3.899 -0.209 H25 A1IFS 51 A1IFS H26 H26 H 0 1 N N N N N N 20.131 70.130 118.372 -6.130 -2.963 -1.703 H26 A1IFS 52 A1IFS H27 H27 H 0 1 N N N N N N 21.312 71.130 117.460 -4.796 -3.927 -1.026 H27 A1IFS 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IFS C N SING N N 1 A1IFS N C1 SING N N 2 A1IFS C4 C5 SING N N 3 A1IFS C4 C3 SING N N 4 A1IFS O1 S DOUB N N 5 A1IFS C5 N1 SING N N 6 A1IFS C1 O DOUB N N 7 A1IFS C1 C2 SING N N 8 A1IFS C15 S SING N N 9 A1IFS C15 C14 SING N N 10 A1IFS C3 C2 SING N N 11 A1IFS S O2 DOUB N N 12 A1IFS S C16 SING N N 13 A1IFS N1 C2 SING N N 14 A1IFS N1 C6 SING N N 15 A1IFS N2 C6 DOUB Y N 16 A1IFS N2 C7 SING Y N 17 A1IFS C6 N3 SING Y N 18 A1IFS C14 C13 SING N N 19 A1IFS C8 C7 SING N N 20 A1IFS C7 C9 DOUB Y N 21 A1IFS C16 C13 SING N N 22 A1IFS C13 C12 SING N N 23 A1IFS N3 C10 DOUB Y N 24 A1IFS C9 C10 SING Y N 25 A1IFS C10 N4 SING N N 26 A1IFS C12 N4 SING N N 27 A1IFS N4 C11 SING N N 28 A1IFS C2 H1 SING N N 29 A1IFS C3 H2 SING N N 30 A1IFS C3 H3 SING N N 31 A1IFS C8 H4 SING N N 32 A1IFS C8 H5 SING N N 33 A1IFS C8 H6 SING N N 34 A1IFS C9 H7 SING N N 35 A1IFS C11 H8 SING N N 36 A1IFS C11 H9 SING N N 37 A1IFS C11 H10 SING N N 38 A1IFS C12 H11 SING N N 39 A1IFS C12 H12 SING N N 40 A1IFS C13 H13 SING N N 41 A1IFS C14 H14 SING N N 42 A1IFS C14 H15 SING N N 43 A1IFS C15 H16 SING N N 44 A1IFS C15 H17 SING N N 45 A1IFS C16 H18 SING N N 46 A1IFS C16 H19 SING N N 47 A1IFS C5 H20 SING N N 48 A1IFS C5 H21 SING N N 49 A1IFS C4 H22 SING N N 50 A1IFS C4 H23 SING N N 51 A1IFS N H24 SING N N 52 A1IFS C H25 SING N N 53 A1IFS C H26 SING N N 54 A1IFS C H27 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IFS InChI InChI 1.06 "InChI=1S/C17H27N5O3S/c1-12-9-15(21(3)10-13-6-8-26(24,25)11-13)20-17(19-12)22-7-4-5-14(22)16(23)18-2/h9,13-14H,4-8,10-11H2,1-3H3,(H,18,23)/t13-,14+/m1/s1" A1IFS InChIKey InChI 1.06 FPDVOQXTUVFQHW-KGLIPLIRSA-N A1IFS SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@@H]1CCCN1c2nc(C)cc(n2)N(C)C[C@H]3CC[S](=O)(=O)C3" A1IFS SMILES CACTVS 3.385 "CNC(=O)[CH]1CCCN1c2nc(C)cc(n2)N(C)C[CH]3CC[S](=O)(=O)C3" A1IFS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCC[C@H]2C(=O)NC)N(C)C[C@H]3CCS(=O)(=O)C3" A1IFS SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCCC2C(=O)NC)N(C)CC3CCS(=O)(=O)C3" # _pdbx_chem_comp_identifier.comp_id A1IFS _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-[4-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]methyl-methyl-amino]-6-methyl-pyrimidin-2-yl]-~{N}-methyl-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IFS "Create component" 2024-06-26 PDBE A1IFS "Initial release" 2025-09-03 RCSB #