data_A1IFY # _chem_comp.id A1IFY _chem_comp.name "[(2~{R})-4-methyl-1-oxidanylidene-1-[[2-(4-propan-2-yloxyphenyl)pyrimidin-5-yl]amino]pentan-2-yl]phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-26 _chem_comp.pdbx_modified_date 2025-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.401 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IFY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FS0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IFY C10 C1 C 0 1 N N N N N N -4.392 -0.190 19.433 -7.034 -2.160 1.622 C10 A1IFY 1 A1IFY N12 N1 N 0 1 N N N N N N -5.567 -3.952 23.016 -1.948 -0.950 -0.492 N12 A1IFY 2 A1IFY C13 C2 C 0 1 Y N N N N N -6.515 -3.752 24.094 -0.575 -0.733 -0.333 C13 A1IFY 3 A1IFY C20 C3 C 0 1 Y N N N N N -10.649 -4.171 27.037 3.987 0.554 1.284 C20 A1IFY 4 A1IFY C21 C4 C 0 1 Y N N N N N -11.707 -3.923 27.913 5.340 0.761 1.441 C21 A1IFY 5 A1IFY C22 C5 C 0 1 Y N N N N N -11.802 -2.726 28.582 6.228 0.332 0.463 C22 A1IFY 6 A1IFY C24 C6 C 0 1 N N N N N N -12.939 -2.979 30.735 8.416 0.085 -0.431 C24 A1IFY 7 A1IFY C26 C7 C 0 1 N N N N N N -13.453 -4.417 30.695 9.731 0.868 -0.393 C26 A1IFY 8 A1IFY C28 C8 C 0 1 Y N N N N N -9.771 -2.013 27.515 4.402 -0.512 -0.841 C28 A1IFY 9 A1IFY C02 C9 C 0 1 N N N N N N -4.520 -3.068 22.715 -2.833 -0.052 -0.014 C02 A1IFY 10 A1IFY C03 C10 C 0 1 N N R N N N -3.830 -3.520 21.472 -4.305 -0.228 -0.284 C03 A1IFY 11 A1IFY C08 C11 C 0 1 N N N N N N -3.632 -2.254 20.618 -4.933 -1.059 0.837 C08 A1IFY 12 A1IFY C09 C12 C 0 1 N N N N N N -4.858 -1.407 20.250 -6.369 -1.427 0.456 C09 A1IFY 13 A1IFY C11 C13 C 0 1 N N N N N N -5.907 -2.266 19.553 -6.353 -2.335 -0.775 C11 A1IFY 14 A1IFY C14 C14 C 0 1 Y N N N N N -6.236 -3.052 25.256 -0.081 -0.098 0.805 C14 A1IFY 15 A1IFY C16 C15 C 0 1 Y N N N N N -7.775 -4.225 23.879 0.331 -1.151 -1.305 C16 A1IFY 16 A1IFY C18 C16 C 0 1 Y N N N N N -8.450 -3.413 25.915 2.054 -0.317 -0.027 C18 A1IFY 17 A1IFY C19 C17 C 0 1 Y N N N N N -9.643 -3.237 26.872 3.509 -0.087 0.142 C19 A1IFY 18 A1IFY C25 C18 C 0 1 N N N N N N -11.551 -2.858 31.345 8.705 -1.406 -0.247 C25 A1IFY 19 A1IFY C27 C19 C 0 1 Y N N N N N -10.836 -1.759 28.368 5.755 -0.307 -0.676 C27 A1IFY 20 A1IFY N15 N2 N 0 1 Y N N N N N -7.229 -2.917 26.153 1.222 0.090 0.922 N15 A1IFY 21 A1IFY N17 N3 N 0 1 Y N N N N N -8.702 -4.076 24.836 1.620 -0.929 -1.121 N17 A1IFY 22 A1IFY O01 O1 O 0 1 N N N N N N -4.271 -2.066 23.358 -2.444 0.897 0.632 O01 A1IFY 23 A1IFY O05 O2 O 0 1 N N N N N N -1.702 -4.815 20.560 -6.696 1.215 -0.554 O05 A1IFY 24 A1IFY O06 O3 O 0 1 N N N N N N -1.350 -3.406 22.589 -4.858 2.133 0.912 O06 A1IFY 25 A1IFY O07 O4 O 0 1 N N N N N N -2.700 -5.565 22.784 -4.509 2.249 -1.585 O07 A1IFY 26 A1IFY O23 O5 O 0 1 N N N N N N -12.898 -2.469 29.434 7.561 0.538 0.620 O23 A1IFY 27 A1IFY P04 P1 P 0 1 N N N N N N -2.300 -4.399 21.858 -5.110 1.406 -0.352 P04 A1IFY 28 A1IFY H101 H1 H 0 0 N N N N N N -5.262 0.426 19.163 -7.044 -1.513 2.500 H101 A1IFY 29 A1IFY H102 H2 H 0 0 N N N N N N -3.692 0.409 20.034 -8.057 -2.422 1.351 H102 A1IFY 30 A1IFY H103 H3 H 0 0 N N N N N N -3.888 -0.534 18.518 -6.474 -3.068 1.847 H103 A1IFY 31 A1IFY H121 H4 H 0 0 N N N N N N -5.665 -4.771 22.451 -2.264 -1.747 -0.946 H121 A1IFY 32 A1IFY H201 H5 H 0 0 N N N N N N -10.616 -5.098 26.485 3.297 0.884 2.047 H201 A1IFY 33 A1IFY H211 H6 H 0 0 N N N N N N -12.461 -4.681 28.067 5.711 1.258 2.326 H211 A1IFY 34 A1IFY H241 H7 H 0 0 N N N N N N -13.635 -2.385 31.346 7.926 0.244 -1.392 H241 A1IFY 35 A1IFY H263 H8 H 0 0 N N N N N N -13.487 -4.823 31.717 10.220 0.709 0.568 H263 A1IFY 36 A1IFY H262 H9 H 0 0 N N N N N N -14.463 -4.433 30.260 10.383 0.522 -1.195 H262 A1IFY 37 A1IFY H261 H10 H 0 0 N N N N N N -12.779 -5.030 30.079 9.525 1.930 -0.524 H261 A1IFY 38 A1IFY H281 H11 H 0 0 N N N N N N -9.029 -1.246 27.349 4.035 -1.009 -1.727 H281 A1IFY 39 A1IFY H031 H12 H 0 0 N N N N N N -4.467 -4.231 20.926 -4.442 -0.740 -1.236 H031 A1IFY 40 A1IFY H082 H13 H 0 0 N N N N N N -2.941 -1.599 21.168 -4.352 -1.970 0.983 H082 A1IFY 41 A1IFY H081 H14 H 0 0 N N N N N N -3.164 -2.571 19.674 -4.939 -0.480 1.760 H081 A1IFY 42 A1IFY H091 H15 H 0 0 N N N N N N -5.298 -1.032 21.186 -6.928 -0.519 0.231 H091 A1IFY 43 A1IFY H111 H16 H 0 0 N N N N N N -6.778 -1.645 19.296 -5.794 -3.243 -0.550 H111 A1IFY 44 A1IFY H113 H17 H 0 0 N N N N N N -5.479 -2.695 18.635 -7.376 -2.596 -1.046 H113 A1IFY 45 A1IFY H112 H18 H 0 0 N N N N N N -6.221 -3.078 20.225 -5.880 -1.812 -1.606 H112 A1IFY 46 A1IFY H141 H19 H 0 0 N N N N N N -5.258 -2.630 25.435 -0.754 0.235 1.582 H141 A1IFY 47 A1IFY H161 H20 H 0 0 N N N N N N -8.024 -4.714 22.949 -0.017 -1.649 -2.198 H161 A1IFY 48 A1IFY H252 H21 H 0 0 N N N N N N -11.565 -3.255 32.371 7.769 -1.963 -0.274 H252 A1IFY 49 A1IFY H253 H22 H 0 0 N N N N N N -10.833 -3.431 30.740 9.357 -1.752 -1.049 H253 A1IFY 50 A1IFY H251 H23 H 0 0 N N N N N N -11.251 -1.800 31.366 9.195 -1.565 0.714 H251 A1IFY 51 A1IFY H271 H24 H 0 0 N N N N N N -10.911 -0.804 28.866 6.448 -0.635 -1.437 H271 A1IFY 52 A1IFY H1 H25 H 0 1 N N N N N N -0.862 -4.387 20.446 -7.172 0.997 0.258 H1 A1IFY 53 A1IFY H2 H26 H 0 1 N N N N N N -2.286 -5.453 23.632 -3.556 2.403 -1.529 H2 A1IFY 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IFY C02 O01 DOUB N N 1 A1IFY O05 P04 SING N N 2 A1IFY O06 P04 DOUB N N 3 A1IFY O07 P04 SING N N 4 A1IFY P04 C03 SING N N 5 A1IFY C08 C03 SING N N 6 A1IFY C09 C08 SING N N 7 A1IFY C10 C09 SING N N 8 A1IFY C11 C09 SING N N 9 A1IFY C03 C02 SING N N 10 A1IFY N12 C02 SING N N 11 A1IFY C13 N12 SING N N 12 A1IFY N15 C14 DOUB Y N 13 A1IFY C14 C13 SING Y N 14 A1IFY C16 C13 DOUB Y N 15 A1IFY N17 C16 SING Y N 16 A1IFY C18 N17 DOUB Y N 17 A1IFY C19 C18 SING N N 18 A1IFY C20 C19 DOUB Y N 19 A1IFY C21 C20 SING Y N 20 A1IFY C22 C21 DOUB Y N 21 A1IFY C24 O23 SING N N 22 A1IFY C25 C24 SING N N 23 A1IFY C26 C24 SING N N 24 A1IFY O23 C22 SING N N 25 A1IFY C27 C22 SING Y N 26 A1IFY C28 C27 DOUB Y N 27 A1IFY N15 C18 SING Y N 28 A1IFY C19 C28 SING Y N 29 A1IFY C10 H101 SING N N 30 A1IFY C10 H102 SING N N 31 A1IFY C10 H103 SING N N 32 A1IFY N12 H121 SING N N 33 A1IFY C20 H201 SING N N 34 A1IFY C21 H211 SING N N 35 A1IFY C24 H241 SING N N 36 A1IFY C26 H263 SING N N 37 A1IFY C26 H262 SING N N 38 A1IFY C26 H261 SING N N 39 A1IFY C28 H281 SING N N 40 A1IFY C03 H031 SING N N 41 A1IFY C08 H082 SING N N 42 A1IFY C08 H081 SING N N 43 A1IFY C09 H091 SING N N 44 A1IFY C11 H111 SING N N 45 A1IFY C11 H113 SING N N 46 A1IFY C11 H112 SING N N 47 A1IFY C14 H141 SING N N 48 A1IFY C16 H161 SING N N 49 A1IFY C25 H252 SING N N 50 A1IFY C25 H253 SING N N 51 A1IFY C25 H251 SING N N 52 A1IFY C27 H271 SING N N 53 A1IFY O05 H1 SING N N 54 A1IFY O07 H2 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IFY InChI InChI 1.06 "InChI=1S/C19H26N3O5P/c1-12(2)9-17(28(24,25)26)19(23)22-15-10-20-18(21-11-15)14-5-7-16(8-6-14)27-13(3)4/h5-8,10-13,17H,9H2,1-4H3,(H,22,23)(H2,24,25,26)/t17-/m1/s1" A1IFY InChIKey InChI 1.06 JJVIBWXWISWCGX-QGZVFWFLSA-N A1IFY SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](C(=O)Nc1cnc(nc1)c2ccc(OC(C)C)cc2)[P](O)(O)=O" A1IFY SMILES CACTVS 3.385 "CC(C)C[CH](C(=O)Nc1cnc(nc1)c2ccc(OC(C)C)cc2)[P](O)(O)=O" A1IFY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@H](C(=O)Nc1cnc(nc1)c2ccc(cc2)OC(C)C)P(=O)(O)O" A1IFY SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)Nc1cnc(nc1)c2ccc(cc2)OC(C)C)P(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id A1IFY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-4-methyl-1-oxidanylidene-1-[[2-(4-propan-2-yloxyphenyl)pyrimidin-5-yl]amino]pentan-2-yl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IFY "Create component" 2024-06-26 PDBE A1IFY "Initial release" 2025-07-02 RCSB #