data_A1IGA # _chem_comp.id A1IGA _chem_comp.name "Lansoprazole sulfide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 F3 N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[[3-methyl-4-[2,2,2-tris(fluoranyl)ethoxy]pyridin-2-yl]methylsulfanyl]-1H-benzimidazole" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-27 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 353.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IGA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FTZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IGA C10 C1 C 0 1 Y N N N N N 212.954 213.522 231.489 -6.019 -0.565 -1.636 C10 A1IGA 1 A1IGA C13 C2 C 0 1 Y N N N N N 218.104 207.736 237.369 3.066 2.016 -0.123 C13 A1IGA 2 A1IGA C15 C3 C 0 1 N N N N N N 217.906 204.916 237.841 5.102 0.216 0.010 C15 A1IGA 3 A1IGA C01 C4 C 0 1 N N N N N N 218.407 206.046 233.972 1.077 -1.187 -0.430 C01 A1IGA 4 A1IGA C02 C5 C 0 1 Y N N N N N 218.181 207.075 235.025 1.445 0.272 -0.342 C02 A1IGA 5 A1IGA C03 C6 C 0 1 Y N N N N N 217.818 208.415 234.662 0.469 1.244 -0.403 C03 A1IGA 6 A1IGA C04 C7 C 0 1 N N N N N N 217.650 208.825 233.185 -0.975 0.840 -0.558 C04 A1IGA 7 A1IGA C05 C8 C 0 1 Y N N N N N 215.584 211.060 232.139 -3.355 0.162 0.610 C05 A1IGA 8 A1IGA C06 C9 C 0 1 Y N N N N N 213.504 211.117 231.356 -5.485 -0.435 0.721 C06 A1IGA 9 A1IGA C07 C10 C 0 1 Y N N N N N 212.218 210.864 230.827 -6.786 -0.802 1.030 C07 A1IGA 10 A1IGA C08 C11 C 0 1 Y N N N N N 211.343 211.915 230.644 -7.687 -1.058 0.017 C08 A1IGA 11 A1IGA C09 C12 C 0 1 Y N N N N N 211.707 213.241 230.973 -7.305 -0.934 -1.311 C09 A1IGA 12 A1IGA C11 C13 C 0 1 Y N N N N N 213.850 212.453 231.679 -5.091 -0.314 -0.622 C11 A1IGA 13 A1IGA C12 C14 C 0 1 Y N N N N N 217.754 209.015 236.924 2.032 2.928 -0.196 C12 A1IGA 14 A1IGA C14 C15 C 0 1 Y N N N N N 218.319 206.758 236.397 2.776 0.657 -0.199 C14 A1IGA 15 A1IGA C16 C16 C 0 1 N N N N N N 218.521 203.515 238.246 6.072 -0.966 0.062 C16 A1IGA 16 A1IGA F01 F1 F 0 1 N N N N N N 217.520 202.587 238.372 5.972 -1.704 -1.123 F01 A1IGA 17 A1IGA F02 F2 F 0 1 N N N N N N 219.117 203.484 239.446 7.379 -0.490 0.206 F02 A1IGA 18 A1IGA F03 F3 F 0 1 N N N N N N 219.369 202.963 237.389 5.751 -1.786 1.150 F03 A1IGA 19 A1IGA N01 N1 N 0 1 Y N N N N N 214.607 210.261 231.652 -4.368 -0.129 1.480 N01 A1IGA 20 A1IGA N02 N2 N 0 1 Y N N N N N 215.160 212.404 232.172 -3.783 0.053 -0.624 N02 A1IGA 21 A1IGA N03 N3 N 0 1 Y N N N N N 217.612 209.357 235.617 0.783 2.524 -0.332 N03 A1IGA 22 A1IGA O01 O1 O 0 1 N N N N N N 218.673 205.469 236.784 3.766 -0.270 -0.137 O01 A1IGA 23 A1IGA S01 S1 S 0 1 N N N N N N 217.271 210.648 232.726 -1.718 0.618 1.077 S01 A1IGA 24 A1IGA H1 H1 H 0 1 N N N N N N 213.236 214.534 231.740 -5.727 -0.475 -2.672 H1 A1IGA 25 A1IGA H2 H2 H 0 1 N N N N N N 218.204 207.514 238.421 4.086 2.354 -0.012 H2 A1IGA 26 A1IGA H3 H3 H 0 1 N N N N N N 217.930 205.593 238.707 5.180 0.790 0.933 H3 A1IGA 27 A1IGA H4 H4 H 0 1 N N N N N N 216.866 204.780 237.510 5.351 0.854 -0.837 H4 A1IGA 28 A1IGA H5 H5 H 0 1 N N N N N N 219.465 206.054 233.672 0.889 -1.575 0.571 H5 A1IGA 29 A1IGA H6 H6 H 0 1 N N N N N N 218.145 205.053 234.367 0.179 -1.299 -1.038 H6 A1IGA 30 A1IGA H7 H7 H 0 1 N N N N N N 217.777 206.271 233.099 1.897 -1.742 -0.887 H7 A1IGA 31 A1IGA H8 H8 H 0 1 N N N N N N 216.826 208.219 232.780 -1.514 1.618 -1.099 H8 A1IGA 32 A1IGA H9 H9 H 0 1 N N N N N N 218.587 208.558 232.674 -1.033 -0.096 -1.114 H9 A1IGA 33 A1IGA H10 H10 H 0 1 N N N N N N 211.923 209.858 230.569 -7.091 -0.896 2.062 H10 A1IGA 34 A1IGA H11 H11 H 0 1 N N N N N N 210.360 211.721 230.241 -8.700 -1.343 0.259 H11 A1IGA 35 A1IGA H12 H12 H 0 1 N N N N N N 211.000 214.043 230.818 -8.021 -1.129 -2.095 H12 A1IGA 36 A1IGA H13 H13 H 0 1 N N N N N N 217.586 209.780 237.667 2.248 3.984 -0.141 H13 A1IGA 37 A1IGA H14 H14 H 0 1 N N N N N N 214.649 209.270 231.525 -4.314 -0.122 2.448 H14 A1IGA 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IGA C08 C07 DOUB Y N 1 A1IGA C08 C09 SING Y N 2 A1IGA C07 C06 SING Y N 3 A1IGA C09 C10 DOUB Y N 4 A1IGA C06 N01 SING Y N 5 A1IGA C06 C11 DOUB Y N 6 A1IGA C10 C11 SING Y N 7 A1IGA N01 C05 SING Y N 8 A1IGA C11 N02 SING Y N 9 A1IGA C05 N02 DOUB Y N 10 A1IGA C05 S01 SING N N 11 A1IGA S01 C04 SING N N 12 A1IGA C04 C03 SING N N 13 A1IGA C01 C02 SING N N 14 A1IGA C03 C02 DOUB Y N 15 A1IGA C03 N03 SING Y N 16 A1IGA C02 C14 SING Y N 17 A1IGA N03 C12 DOUB Y N 18 A1IGA C14 O01 SING N N 19 A1IGA C14 C13 DOUB Y N 20 A1IGA O01 C15 SING N N 21 A1IGA C12 C13 SING Y N 22 A1IGA F03 C16 SING N N 23 A1IGA C15 C16 SING N N 24 A1IGA C16 F01 SING N N 25 A1IGA C16 F02 SING N N 26 A1IGA C10 H1 SING N N 27 A1IGA C13 H2 SING N N 28 A1IGA C15 H3 SING N N 29 A1IGA C15 H4 SING N N 30 A1IGA C01 H5 SING N N 31 A1IGA C01 H6 SING N N 32 A1IGA C01 H7 SING N N 33 A1IGA C04 H8 SING N N 34 A1IGA C04 H9 SING N N 35 A1IGA C07 H10 SING N N 36 A1IGA C08 H11 SING N N 37 A1IGA C09 H12 SING N N 38 A1IGA C12 H13 SING N N 39 A1IGA N01 H14 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IGA InChI InChI 1.06 "InChI=1S/C16H14F3N3OS/c1-10-13(20-7-6-14(10)23-9-16(17,18)19)8-24-15-21-11-4-2-3-5-12(11)22-15/h2-7H,8-9H2,1H3,(H,21,22)" A1IGA InChIKey InChI 1.06 CCHLMSUZHFPSFC-UHFFFAOYSA-N A1IGA SMILES_CANONICAL CACTVS 3.385 "Cc1c(CSc2[nH]c3ccccc3n2)nccc1OCC(F)(F)F" A1IGA SMILES CACTVS 3.385 "Cc1c(CSc2[nH]c3ccccc3n2)nccc1OCC(F)(F)F" A1IGA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccnc1CSc2[nH]c3ccccc3n2)OCC(F)(F)F" A1IGA SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccnc1CSc2[nH]c3ccccc3n2)OCC(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1IGA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[3-methyl-4-[2,2,2-tris(fluoranyl)ethoxy]pyridin-2-yl]methylsulfanyl]-1~{H}-benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IGA "Create component" 2024-06-27 PDBE A1IGA "Initial release" 2024-11-20 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IGA _pdbx_chem_comp_synonyms.name "2-[[3-methyl-4-[2,2,2-tris(fluoranyl)ethoxy]pyridin-2-yl]methylsulfanyl]-1H-benzimidazole" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #