data_A1IGC # _chem_comp.id A1IGC _chem_comp.name "swainsonine-configured alkyl indolizidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H29 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1S,2R,8R,8aR)-3-heptyl-1,2,3,5,6,7,8,8a-octahydroindolizine-1,2,8-triol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-27 _chem_comp.pdbx_modified_date 2024-10-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 271.396 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IGC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FTQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IGC C10 C1 C 0 1 N N S N N N -45.800 14.345 -6.544 -3.059 -1.263 -0.054 C10 A1IGC 1 A1IGC C14 C2 C 0 1 N N N N N N -48.059 13.617 -10.238 -1.506 2.721 0.058 C14 A1IGC 2 A1IGC C8 C3 C 0 1 N N S N N N -48.233 14.029 -6.424 -0.786 -0.871 -0.910 C8 A1IGC 3 A1IGC C9 C4 C 0 1 N N R N N N -46.958 14.112 -5.564 -1.854 -1.977 -0.725 C9 A1IGC 4 A1IGC C11 C5 C 0 1 N N R N N N -46.467 14.532 -7.920 -2.818 0.208 -0.439 C11 A1IGC 5 A1IGC C12 C6 C 0 1 N N R N N N -45.789 14.076 -9.203 -3.455 1.196 0.530 C12 A1IGC 6 A1IGC C13 C7 C 0 1 N N N N N N -46.706 14.293 -10.401 -3.030 2.608 0.101 C13 A1IGC 7 A1IGC C15 C8 C 0 1 N N N N N N -48.676 13.987 -8.895 -0.906 1.616 -0.825 C15 A1IGC 8 A1IGC O2 O1 O 0 1 N N N N N N -44.992 13.188 -6.486 -3.027 -1.431 1.364 O2 A1IGC 9 A1IGC O1 O2 O 0 1 N N N N N N -46.678 12.831 -5.010 -1.355 -3.012 0.123 O1 A1IGC 10 A1IGC O3 O3 O 0 1 N N N N N N -44.603 14.824 -9.437 -4.878 1.079 0.475 O3 A1IGC 11 A1IGC N1 N1 N 0 1 N N N N N N -47.709 13.731 -7.773 -1.343 0.334 -0.294 N1 A1IGC 12 A1IGC H1 H1 H 0 1 N N N N N N -45.243 15.252 -6.266 -4.002 -1.623 -0.466 H1 A1IGC 13 A1IGC H2 H2 H 0 1 N N N N N N -48.728 13.944 -11.047 -1.229 3.694 -0.347 H2 A1IGC 14 A1IGC H3 H3 H 0 1 N N N N N N -47.928 12.526 -10.289 -1.111 2.628 1.069 H3 A1IGC 15 A1IGC H6 H6 H 0 1 N N N N N N -47.025 14.912 -4.812 -2.146 -2.386 -1.692 H6 A1IGC 16 A1IGC H7 H7 H 0 1 N N N N N N -46.738 15.592 -8.028 -3.129 0.400 -1.466 H7 A1IGC 17 A1IGC H8 H8 H 0 1 N N N N N N -45.555 13.004 -9.122 -3.107 0.997 1.544 H8 A1IGC 18 A1IGC H9 H9 H 0 1 N N N N N N -46.215 13.886 -11.297 -3.424 3.334 0.812 H9 A1IGC 19 A1IGC H10 H10 H 0 1 N N N N N N -46.866 15.374 -10.530 -3.434 2.820 -0.889 H10 A1IGC 20 A1IGC H11 H11 H 0 1 N N N N N N -48.944 15.054 -8.903 -1.258 1.731 -1.850 H11 A1IGC 21 A1IGC H12 H12 H 0 1 N N N N N N -49.581 13.383 -8.736 0.183 1.674 -0.799 H12 A1IGC 22 A1IGC H13 H13 H 0 1 N N N N N N -44.604 13.115 -5.622 -3.084 -2.353 1.652 H13 A1IGC 23 A1IGC H14 H14 H 0 1 N N N N N N -47.354 12.602 -4.383 -1.997 -3.710 0.311 H14 A1IGC 24 A1IGC H15 H15 H 0 1 N N N N N N -44.007 14.710 -8.706 -5.346 1.682 1.069 H15 A1IGC 25 A1IGC C7 C9 C 0 1 N N N N N N ? ? ? 0.513 -1.270 -0.206 C7 A1IGC 26 A1IGC C6 C10 C 0 1 N N N N N N ? ? ? 1.598 -0.237 -0.515 C6 A1IGC 27 A1IGC C5 C11 C 0 1 N N N N N N ? ? ? 2.931 -0.707 0.072 C5 A1IGC 28 A1IGC C4 C12 C 0 1 N N N N N N ? ? ? 4.017 0.326 -0.237 C4 A1IGC 29 A1IGC C3 C13 C 0 1 N N N N N N ? ? ? 5.350 -0.144 0.349 C3 A1IGC 30 A1IGC C2 C14 C 0 1 N N N N N N ? ? ? 6.435 0.889 0.040 C2 A1IGC 31 A1IGC C1 C15 C 0 1 N N N N N N ? ? ? 7.768 0.419 0.626 C1 A1IGC 32 A1IGC H5 H5 H 0 1 N N N N N N ? ? ? 0.345 -1.311 0.870 H5 A1IGC 33 A1IGC H16 H16 H 0 1 N N N N N N ? ? ? 0.832 -2.250 -0.561 H16 A1IGC 34 A1IGC H17 H17 H 0 1 N N N N N N ? ? ? 1.696 -0.124 -1.594 H17 A1IGC 35 A1IGC H18 H18 H 0 1 N N N N N N ? ? ? 1.324 0.721 -0.072 H18 A1IGC 36 A1IGC H19 H19 H 0 1 N N N N N N ? ? ? 2.834 -0.820 1.151 H19 A1IGC 37 A1IGC H20 H20 H 0 1 N N N N N N ? ? ? 3.205 -1.665 -0.371 H20 A1IGC 38 A1IGC H21 H21 H 0 1 N N N N N N ? ? ? 4.114 0.439 -1.317 H21 A1IGC 39 A1IGC H22 H22 H 0 1 N N N N N N ? ? ? 3.743 1.284 0.205 H22 A1IGC 40 A1IGC H23 H23 H 0 1 N N N N N N ? ? ? 5.252 -0.257 1.429 H23 A1IGC 41 A1IGC H24 H24 H 0 1 N N N N N N ? ? ? 5.623 -1.102 -0.093 H24 A1IGC 42 A1IGC H25 H25 H 0 1 N N N N N N ? ? ? 6.532 1.002 -1.039 H25 A1IGC 43 A1IGC H26 H26 H 0 1 N N N N N N ? ? ? 6.161 1.847 0.483 H26 A1IGC 44 A1IGC H27 H27 H 0 1 N N N N N N ? ? ? 7.670 0.306 1.706 H27 A1IGC 45 A1IGC H28 H28 H 0 1 N N N N N N ? ? ? 8.042 -0.539 0.184 H28 A1IGC 46 A1IGC H29 H29 H 0 1 N N N N N N ? ? ? 8.541 1.155 0.407 H29 A1IGC 47 A1IGC H30 H30 H 0 1 N N N N N N -48.570 13.022 -6.136 -0.601 -0.701 -1.970 H30 A1IGC 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IGC C13 C14 SING N N 1 A1IGC C13 C12 SING N N 2 A1IGC C14 C15 SING N N 3 A1IGC O3 C12 SING N N 4 A1IGC C12 C11 SING N N 5 A1IGC C15 N1 SING N N 6 A1IGC C11 N1 SING N N 7 A1IGC C11 C10 SING N N 8 A1IGC N1 C8 SING N N 9 A1IGC C10 O2 SING N N 10 A1IGC C10 C9 SING N N 11 A1IGC C8 C9 SING N N 12 A1IGC C9 O1 SING N N 13 A1IGC C10 H1 SING N N 14 A1IGC C14 H2 SING N N 15 A1IGC C14 H3 SING N N 16 A1IGC C9 H6 SING N N 17 A1IGC C11 H7 SING N N 18 A1IGC C12 H8 SING N N 19 A1IGC C13 H9 SING N N 20 A1IGC C13 H10 SING N N 21 A1IGC C15 H11 SING N N 22 A1IGC C15 H12 SING N N 23 A1IGC O2 H13 SING N N 24 A1IGC O1 H14 SING N N 25 A1IGC O3 H15 SING N N 26 A1IGC C8 C7 SING N N 27 A1IGC C7 C6 SING N N 28 A1IGC C6 C5 SING N N 29 A1IGC C5 C4 SING N N 30 A1IGC C4 C3 SING N N 31 A1IGC C3 C2 SING N N 32 A1IGC C2 C1 SING N N 33 A1IGC C7 H5 SING N N 34 A1IGC C7 H16 SING N N 35 A1IGC C6 H17 SING N N 36 A1IGC C6 H18 SING N N 37 A1IGC C5 H19 SING N N 38 A1IGC C5 H20 SING N N 39 A1IGC C4 H21 SING N N 40 A1IGC C4 H22 SING N N 41 A1IGC C3 H23 SING N N 42 A1IGC C3 H24 SING N N 43 A1IGC C2 H25 SING N N 44 A1IGC C2 H26 SING N N 45 A1IGC C1 H27 SING N N 46 A1IGC C1 H28 SING N N 47 A1IGC C1 H29 SING N N 48 A1IGC C8 H30 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IGC InChI InChI 1.06 "InChI=1S/C15H29NO3/c1-2-3-4-5-6-8-11-14(18)15(19)13-12(17)9-7-10-16(11)13/h11-15,17-19H,2-10H2,1H3/t11?,12-,13-,14-,15+/m1/s1" A1IGC InChIKey InChI 1.06 WTMDVWSZYWIVEZ-CVFKAICRSA-N A1IGC SMILES_CANONICAL CACTVS 3.385 "CCCCCCC[C@H]1[C@@H](O)[C@@H](O)[C@H]2[C@H](O)CCCN12" A1IGC SMILES CACTVS 3.385 "CCCCCCC[CH]1[CH](O)[CH](O)[CH]2[CH](O)CCCN12" A1IGC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC1[C@H]([C@H]([C@@H]2N1CCC[C@H]2O)O)O" A1IGC SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC1C(C(C2N1CCCC2O)O)O" # _pdbx_chem_comp_identifier.comp_id A1IGC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{R},8~{R},8~{a}~{R})-3-heptyl-1,2,3,5,6,7,8,8~{a}-octahydroindolizine-1,2,8-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IGC "Create component" 2024-06-27 PDBE A1IGC "Initial release" 2024-10-09 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IGC _pdbx_chem_comp_synonyms.name "(1S,2R,8R,8aR)-3-heptyl-1,2,3,5,6,7,8,8a-octahydroindolizine-1,2,8-triol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #