data_A1IH3 # _chem_comp.id A1IH3 _chem_comp.name 5-iodanyl-2-methylsulfonyl-pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H5 I N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 284.075 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IH3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CG7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IH3 N1 N1 N 0 1 Y N N N N N 87.847 66.140 -21.311 -1.294 1.151 0.048 N1 A1IH3 1 A1IH3 C4 C1 C 0 1 Y N N N N N 87.954 66.154 -18.589 0.029 -1.191 0.027 C4 A1IH3 2 A1IH3 N2 N2 N 0 1 Y N N N N N 89.063 66.451 -19.275 -1.294 -1.151 0.048 N2 A1IH3 3 A1IH3 C3 C2 C 0 1 Y N N N N N 88.939 66.425 -20.602 -1.935 -0.000 0.058 C3 A1IH3 4 A1IH3 I1 I1 I 0 1 N N N N N N 85.043 65.378 -18.096 2.834 0.000 -0.016 I1 A1IH3 5 A1IH3 C1 C3 C 0 1 Y N N N N N 86.761 65.840 -19.211 0.739 -0.000 0.016 C1 A1IH3 6 A1IH3 C2 C4 C 0 1 Y N N N N N 86.755 65.845 -20.594 0.029 1.191 0.028 C2 A1IH3 7 A1IH3 H1 H1 H 0 1 N N N N N N 87.992 66.160 -17.510 0.548 -2.138 0.019 H1 A1IH3 8 A1IH3 H3 H3 H 0 1 N N N N N N 85.839 65.603 -21.113 0.548 2.138 0.019 H3 A1IH3 9 A1IH3 S1 S1 S 0 1 N N N N N N ? ? ? -3.697 -0.000 0.087 S1 A1IH3 10 A1IH3 C6 C6 C 0 1 N N N N N N ? ? ? -4.177 0.000 -1.662 C6 A1IH3 11 A1IH3 O2 O2 O 0 1 N N N N N N ? ? ? -4.037 -1.237 0.697 O2 A1IH3 12 A1IH3 O1 O1 O 0 1 N N N N N N ? ? ? -4.037 1.237 0.698 O1 A1IH3 13 A1IH3 H2 H2 H 0 1 N N N N N N ? ? ? -3.778 -0.890 -2.149 H2 A1IH3 14 A1IH3 H4 H4 H 0 1 N N N N N N ? ? ? -5.265 0.000 -1.740 H4 A1IH3 15 A1IH3 H5 H5 H 0 1 N N N N N N ? ? ? -3.778 0.891 -2.149 H5 A1IH3 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IH3 N1 C3 DOUB Y N 1 A1IH3 N1 C2 SING Y N 2 A1IH3 C3 N2 SING Y N 3 A1IH3 C2 C1 DOUB Y N 4 A1IH3 N2 C4 DOUB Y N 5 A1IH3 C1 C4 SING Y N 6 A1IH3 C1 I1 SING N N 7 A1IH3 C4 H1 SING N N 8 A1IH3 C2 H3 SING N N 9 A1IH3 C3 S1 SING N N 10 A1IH3 S1 C6 SING N N 11 A1IH3 S1 O2 DOUB N N 12 A1IH3 S1 O1 DOUB N N 13 A1IH3 C6 H2 SING N N 14 A1IH3 C6 H4 SING N N 15 A1IH3 C6 H5 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IH3 InChI InChI 1.06 "InChI=1S/C5H5IN2O2S/c1-11(9,10)5-7-2-4(6)3-8-5/h2-3H,1H3" A1IH3 InChIKey InChI 1.06 HFGWJMJTMDNNIT-UHFFFAOYSA-N A1IH3 SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)c1ncc(I)cn1" A1IH3 SMILES CACTVS 3.385 "C[S](=O)(=O)c1ncc(I)cn1" A1IH3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1ncc(cn1)I" A1IH3 SMILES "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1ncc(cn1)I" # _pdbx_chem_comp_identifier.comp_id A1IH3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier 5-iodanyl-2-methylsulfonyl-pyrimidine # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IH3 "Create component" 2024-07-11 PDBE A1IH3 "Initial release" 2024-07-24 RCSB A1IH3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IH3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #