data_A1IHE # _chem_comp.id A1IHE _chem_comp.name "2-[[(2~{R},3~{R},4~{S},5~{S},6~{R})-2-(3,4-dichlorophenyl)sulfanyl-6-(hydroxymethyl)-5-oxidanyl-3-prop-2-ynoxy-oxan-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 Cl2 N2 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-08 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 567.438 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IHE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FYJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IHE C2 C1 C 0 1 N N N N N N 14.793 5.787 -9.268 2.175 3.836 0.279 C2 A1IHE 1 A1IHE C3 C2 C 0 1 N N R N N N 13.418 6.096 -9.802 1.747 2.376 0.117 C3 A1IHE 2 A1IHE O1 O1 O 0 1 N N N N N N 15.815 6.514 -9.915 3.593 3.935 0.137 O1 A1IHE 3 A1IHE C5 C3 C 0 1 N N R N N N 12.154 5.984 -11.825 1.969 0.208 1.118 C5 A1IHE 4 A1IHE C7 C4 C 0 1 Y N N N N N 13.510 8.010 -12.994 4.336 -0.460 -0.219 C7 A1IHE 5 A1IHE O4 O2 O 0 1 N N N N N N 13.369 5.635 -11.164 2.289 1.599 1.187 O4 A1IHE 6 A1IHE C11 C5 C 0 1 Y N N N N N 15.942 8.362 -14.261 7.081 -0.439 0.138 C11 A1IHE 7 A1IHE C13 C6 C 0 1 Y N N N N N 14.886 7.798 -14.948 6.250 0.021 1.144 C13 A1IHE 8 A1IHE C14 C7 C 0 1 Y N N N N N 13.670 7.621 -14.318 4.880 0.013 0.969 C14 A1IHE 9 A1IHE C15 C8 C 0 1 N N R N N N 10.932 5.441 -11.085 0.451 0.030 1.188 C15 A1IHE 10 A1IHE C17 C9 C 0 1 N N N N N N 9.412 5.449 -12.904 0.068 -2.055 2.306 C17 A1IHE 11 A1IHE C18 C10 C 0 1 N N N N N N 9.056 4.035 -12.869 -0.273 -3.466 2.060 C18 A1IHE 12 A1IHE C19 C11 C 0 1 N N N N N N 8.818 2.884 -12.861 -0.544 -4.591 1.864 C19 A1IHE 13 A1IHE C20 C12 C 0 1 N N S N N N 10.960 5.829 -9.615 -0.200 0.815 0.045 C20 A1IHE 14 A1IHE C22 C13 C 0 1 N N N N N N 8.793 5.941 -8.584 -2.299 0.783 -1.112 C22 A1IHE 15 A1IHE C23 C14 C 0 1 Y N N N N N 7.824 5.174 -7.759 -3.785 0.668 -0.888 C23 A1IHE 16 A1IHE C25 C15 C 0 1 Y N N N N N 6.540 4.551 -6.156 -5.856 1.220 -0.521 C25 A1IHE 17 A1IHE C26 C16 C 0 1 Y N N N N N 5.843 4.396 -4.960 -7.080 1.854 -0.279 C26 A1IHE 18 A1IHE C27 C17 C 0 1 Y N N N N N 4.872 3.416 -4.873 -8.219 1.116 -0.160 C27 A1IHE 19 A1IHE C28 C18 C 0 1 Y N N N N N 4.583 2.583 -5.957 -8.178 -0.280 -0.278 C28 A1IHE 20 A1IHE C29 C19 C 0 1 N N N N N N 3.533 1.510 -5.824 -9.418 -1.067 -0.146 C29 A1IHE 21 A1IHE C32 C20 C 0 1 Y N N N N N 5.277 2.734 -7.159 -6.966 -0.927 -0.520 C32 A1IHE 22 A1IHE C33 C21 C 0 1 Y N N N N N 6.245 3.720 -7.233 -5.807 -0.182 -0.642 C33 A1IHE 23 A1IHE C35 C22 C 0 1 N N N N N N 7.136 3.565 -9.606 -3.931 -1.841 -1.071 C35 A1IHE 24 A1IHE C36 C23 C 0 1 N N S N N N 12.296 5.449 -9.000 0.219 2.285 0.146 C36 A1IHE 25 A1IHE C8 C24 C 0 1 Y N N N N N 14.575 8.575 -12.311 5.171 -0.922 -1.228 C8 A1IHE 26 A1IHE C9 C25 C 0 1 Y N N N N N 15.784 8.752 -12.947 6.542 -0.911 -1.048 C9 A1IHE 27 A1IHE N24 N1 N 0 1 Y N N N N N 7.534 5.456 -6.504 -4.588 1.673 -0.684 N24 A1IHE 28 A1IHE N34 N2 N 0 1 Y N N N N N 7.085 4.138 -8.257 -4.482 -0.498 -0.876 N34 A1IHE 29 A1IHE O16 O3 O 0 1 N N N N N N 9.710 5.958 -11.603 0.125 -1.355 1.061 O16 A1IHE 30 A1IHE O21 O4 O 0 1 N N N N N N 9.934 5.136 -8.906 -1.622 0.716 0.145 O21 A1IHE 31 A1IHE O30 O5 O 0 1 N N N N N N 2.800 1.546 -4.799 -10.590 -0.443 0.088 O30 A1IHE 32 A1IHE O31 O6 O 0 1 N N N N N N 3.462 0.635 -6.719 -9.384 -2.277 -0.248 O31 A1IHE 33 A1IHE O37 O7 O 0 1 N N N N N N 12.398 4.025 -8.985 -0.269 2.837 1.371 O37 A1IHE 34 A1IHE S6 S1 S 0 1 N N N N N N 11.973 7.771 -12.152 2.588 -0.479 -0.443 S6 A1IHE 35 A1IHE CL10 CL1 CL 0 0 N N N N N N 17.076 9.511 -12.082 7.587 -1.488 -2.307 CL10 A1IHE 36 A1IHE CL12 CL2 CL 0 0 N N N N N N 17.468 8.526 -15.050 8.802 -0.427 0.361 CL12 A1IHE 37 A1IHE H2A H1 H 0 1 N N N N N N 14.988 4.713 -9.404 1.690 4.443 -0.485 H2A A1IHE 38 A1IHE H2B H2 H 0 1 N N N N N N 14.815 6.031 -8.196 1.883 4.193 1.266 H2B A1IHE 39 A1IHE H3 H3 H 0 1 N N N N N N 13.273 7.186 -9.780 2.116 1.992 -0.834 H3 A1IHE 40 A1IHE H1 H4 H 0 1 N N N N N N 16.656 6.281 -9.540 3.936 4.834 0.228 H1 A1IHE 41 A1IHE H5 H5 H 0 1 N N N N N N 12.158 5.524 -12.824 2.435 -0.314 1.954 H5 A1IHE 42 A1IHE H13 H6 H 0 1 N N N N N N 15.011 7.495 -15.977 6.674 0.387 2.068 H13 A1IHE 43 A1IHE H14 H7 H 0 1 N N N N N N 12.843 7.180 -14.855 4.233 0.373 1.755 H14 A1IHE 44 A1IHE H15 H8 H 0 1 N N N N N N 10.937 4.344 -11.159 0.083 0.405 2.143 H15 A1IHE 45 A1IHE H17A H9 H 0 0 N N N N N N 8.569 6.017 -13.323 -0.693 -1.603 2.942 H17A A1IHE 46 A1IHE H17B H10 H 0 0 N N N N N N 10.296 5.577 -13.546 1.038 -1.997 2.800 H17B A1IHE 47 A1IHE H19 H11 H 0 1 N N N N N N 8.603 1.846 -12.854 -0.787 -5.598 1.689 H19 A1IHE 48 A1IHE H20 H12 H 0 1 N N N N N N 10.819 6.916 -9.527 0.128 0.407 -0.911 H20 A1IHE 49 A1IHE H22A H13 H 0 0 N N N N N N 9.123 6.827 -8.022 -1.964 -0.034 -1.750 H22A A1IHE 50 A1IHE H22B H14 H 0 0 N N N N N N 8.302 6.259 -9.515 -2.077 1.735 -1.594 H22B A1IHE 51 A1IHE H26 H15 H 0 1 N N N N N N 6.058 5.032 -4.114 -7.122 2.929 -0.185 H26 A1IHE 52 A1IHE H27 H16 H 0 1 N N N N N N 4.326 3.292 -3.949 -9.160 1.611 0.028 H27 A1IHE 53 A1IHE H32 H17 H 0 1 N N N N N N 5.064 2.099 -8.007 -6.933 -2.003 -0.612 H32 A1IHE 54 A1IHE H35B H18 H 0 0 N N N N N N 7.894 4.095 -10.202 -3.953 -2.092 -2.131 H35B A1IHE 55 A1IHE H35A H19 H 0 0 N N N N N N 7.400 2.499 -9.542 -2.902 -1.867 -0.713 H35A A1IHE 56 A1IHE H35C H20 H 0 0 N N N N N N 6.152 3.671 -10.087 -4.528 -2.563 -0.513 H35C A1IHE 57 A1IHE H36 H21 H 0 1 N N N N N N 12.332 5.837 -7.971 -0.195 2.841 -0.695 H36 A1IHE 58 A1IHE H8 H22 H 0 1 N N N N N N 14.457 8.876 -11.281 4.751 -1.290 -2.152 H8 A1IHE 59 A1IHE H2 H23 H 0 1 N N N N N N 2.195 0.814 -4.816 -11.376 -1.000 0.166 H2 A1IHE 60 A1IHE H37 H24 H 0 1 N N N N N N 13.230 3.771 -8.603 -0.040 3.767 1.502 H37 A1IHE 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IHE O1 C2 SING N N 1 A1IHE C2 C3 SING N N 2 A1IHE C3 O4 SING N N 3 A1IHE O4 C5 SING N N 4 A1IHE C5 S6 SING N N 5 A1IHE S6 C7 SING N N 6 A1IHE C7 C8 DOUB Y N 7 A1IHE C8 C9 SING Y N 8 A1IHE C9 CL10 SING N N 9 A1IHE C9 C11 DOUB Y N 10 A1IHE C11 CL12 SING N N 11 A1IHE C11 C13 SING Y N 12 A1IHE C13 C14 DOUB Y N 13 A1IHE C5 C15 SING N N 14 A1IHE C15 O16 SING N N 15 A1IHE O16 C17 SING N N 16 A1IHE C17 C18 SING N N 17 A1IHE C18 C19 TRIP N N 18 A1IHE C15 C20 SING N N 19 A1IHE C20 O21 SING N N 20 A1IHE O21 C22 SING N N 21 A1IHE C22 C23 SING N N 22 A1IHE C23 N24 DOUB Y N 23 A1IHE N24 C25 SING Y N 24 A1IHE C25 C26 DOUB Y N 25 A1IHE C26 C27 SING Y N 26 A1IHE C27 C28 DOUB Y N 27 A1IHE C28 C29 SING N N 28 A1IHE C29 O30 SING N N 29 A1IHE C29 O31 DOUB N N 30 A1IHE C28 C32 SING Y N 31 A1IHE C25 C33 SING Y N 32 A1IHE C33 N34 SING Y N 33 A1IHE N34 C35 SING N N 34 A1IHE C20 C36 SING N N 35 A1IHE C36 O37 SING N N 36 A1IHE C36 C3 SING N N 37 A1IHE C14 C7 SING Y N 38 A1IHE N34 C23 SING Y N 39 A1IHE C33 C32 DOUB Y N 40 A1IHE C2 H2A SING N N 41 A1IHE C2 H2B SING N N 42 A1IHE C3 H3 SING N N 43 A1IHE O1 H1 SING N N 44 A1IHE C5 H5 SING N N 45 A1IHE C13 H13 SING N N 46 A1IHE C14 H14 SING N N 47 A1IHE C15 H15 SING N N 48 A1IHE C17 H17A SING N N 49 A1IHE C17 H17B SING N N 50 A1IHE C19 H19 SING N N 51 A1IHE C20 H20 SING N N 52 A1IHE C22 H22A SING N N 53 A1IHE C22 H22B SING N N 54 A1IHE C26 H26 SING N N 55 A1IHE C27 H27 SING N N 56 A1IHE C32 H32 SING N N 57 A1IHE C35 H35B SING N N 58 A1IHE C35 H35A SING N N 59 A1IHE C35 H35C SING N N 60 A1IHE C36 H36 SING N N 61 A1IHE C8 H8 SING N N 62 A1IHE O30 H2 SING N N 63 A1IHE O37 H37 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IHE InChI InChI 1.06 "InChI=1S/C25H24Cl2N2O7S/c1-3-8-34-23-22(35-12-20-28-17-7-4-13(24(32)33)9-18(17)29(20)2)21(31)19(11-30)36-25(23)37-14-5-6-15(26)16(27)10-14/h1,4-7,9-10,19,21-23,25,30-31H,8,11-12H2,2H3,(H,32,33)/t19-,21+,22+,23-,25-/m1/s1" A1IHE InChIKey InChI 1.06 QFRHUULPFZESGE-BQYMIBSYSA-N A1IHE SMILES_CANONICAL CACTVS 3.385 "Cn1c(CO[C@H]2[C@@H](O)[C@@H](CO)O[C@H](Sc3ccc(Cl)c(Cl)c3)[C@@H]2OCC#C)nc4ccc(cc14)C(O)=O" A1IHE SMILES CACTVS 3.385 "Cn1c(CO[CH]2[CH](O)[CH](CO)O[CH](Sc3ccc(Cl)c(Cl)c3)[CH]2OCC#C)nc4ccc(cc14)C(O)=O" A1IHE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2nc1CO[C@H]3[C@H]([C@H](O[C@@H]([C@@H]3OCC#C)Sc4ccc(c(c4)Cl)Cl)CO)O)C(=O)O" A1IHE SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2nc1COC3C(C(OC(C3OCC#C)Sc4ccc(c(c4)Cl)Cl)CO)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IHE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{R},4~{S},5~{S},6~{R})-2-(3,4-dichlorophenyl)sulfanyl-6-(hydroxymethyl)-5-oxidanyl-3-prop-2-ynoxy-oxan-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IHE "Create component" 2024-07-08 PDBE A1IHE "Initial release" 2025-03-12 RCSB #