data_A1IHR # _chem_comp.id A1IHR _chem_comp.name "cryptophycin-uD[Dab]" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H43 Cl N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3S,10R,13E,16S)-3-(2-azanylethyl)-10-[(3-chloranyl-4-methoxy-phenyl)methyl]-6,6-dimethyl-16-[(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl]-1-oxa-4,8,11-triazacyclohexadec-13-ene-2,5,9,12-tetrone" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-09 _chem_comp.pdbx_modified_date 2024-10-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 655.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IHR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IHR C14 C1 C 0 1 Y N N N N N 25.025 -27.653 -44.574 5.592 1.204 -1.724 C14 A1IHR 1 A1IHR C10 C2 C 0 1 Y N N N N N 24.966 -28.636 -42.380 7.406 2.167 -0.487 C10 A1IHR 2 A1IHR C12 C3 C 0 1 N N N N N N 26.800 -29.976 -41.552 7.887 4.467 -0.846 C12 A1IHR 3 A1IHR C13 C4 C 0 1 Y N N N N N 25.634 -28.421 -43.585 6.380 2.295 -1.413 C13 A1IHR 4 A1IHR C02 C5 C 0 1 N N N N N N 25.146 -23.474 -43.900 1.976 0.223 0.218 C02 A1IHR 5 A1IHR C04 C6 C 0 1 N N R N N N 23.256 -24.784 -45.046 3.752 -1.239 -0.504 C04 A1IHR 6 A1IHR C05 C7 C 0 1 N N N N N N 23.117 -26.265 -45.444 4.955 -1.200 -1.448 C05 A1IHR 7 A1IHR C06 C8 C 0 1 Y N N N N N 23.758 -27.102 -44.368 5.820 -0.014 -1.110 C06 A1IHR 8 A1IHR C07 C9 C 0 1 Y N N N N N 23.094 -27.311 -43.161 6.842 -0.145 -0.188 C07 A1IHR 9 A1IHR C08 C10 C 0 1 Y N N N N N 23.697 -28.083 -42.167 7.637 0.942 0.124 C08 A1IHR 10 A1IHR C15 C11 C 0 1 N N N N N N 22.964 -23.839 -46.181 2.946 -2.492 -0.755 C15 A1IHR 11 A1IHR C17 C12 C 0 1 N N N N N N 23.866 -22.565 -48.145 1.350 -4.155 -0.082 C17 A1IHR 12 A1IHR C18 C13 C 0 1 N N N N N N 24.582 -21.230 -47.805 0.037 -4.090 0.700 C18 A1IHR 13 A1IHR C19 C14 C 0 1 N N N N N N 24.100 -20.662 -46.455 0.329 -3.714 2.155 C19 A1IHR 14 A1IHR C20 C15 C 0 1 N N N N N N 24.273 -20.181 -48.891 -0.649 -5.457 0.656 C20 A1IHR 15 A1IHR C21 C16 C 0 1 N N N N N N 26.078 -21.430 -47.727 -0.870 -3.054 0.087 C21 A1IHR 16 A1IHR C23 C17 C 0 1 N N S N N N 28.235 -20.247 -47.453 -2.812 -1.643 0.101 C23 A1IHR 17 A1IHR C24 C18 C 0 1 N N N N N N 28.893 -18.955 -47.965 -4.270 -2.107 0.112 C24 A1IHR 18 A1IHR C25 C19 C 0 1 N N N N N N 29.262 -19.051 -49.424 -4.407 -3.381 -0.724 C25 A1IHR 19 A1IHR C30 C20 C 0 1 N N N N N N 26.580 -23.475 -43.551 0.972 1.271 -0.022 C30 A1IHR 20 A1IHR C31 C21 C 0 1 N N N N N N 27.288 -22.326 -43.505 0.103 1.585 0.936 C31 A1IHR 21 A1IHR C32 C22 C 0 1 N N N N N N 28.762 -22.162 -43.202 -0.941 2.642 0.689 C32 A1IHR 22 A1IHR C33 C23 C 0 1 N N S N N N 29.330 -20.870 -43.860 -2.331 2.032 0.884 C33 A1IHR 23 A1IHR C35 C24 C 0 1 N N N N N N 28.223 -20.227 -45.940 -2.696 -0.328 0.819 C35 A1IHR 24 A1IHR C37 C25 C 0 1 N N S N N N 30.828 -20.640 -43.517 -3.394 3.009 0.379 C37 A1IHR 25 A1IHR C38 C26 C 0 1 N N N N N N 31.048 -20.326 -42.024 -3.298 4.319 1.164 C38 A1IHR 26 A1IHR C39 C27 C 0 1 N N R N N N 31.499 -19.522 -44.348 -4.783 2.398 0.575 C39 A1IHR 27 A1IHR C40 C28 C 0 1 N N R N N N 32.268 -19.873 -45.571 -5.985 3.169 0.026 C40 A1IHR 28 A1IHR C42 C29 C 0 1 Y N N N N N 32.427 -18.908 -46.721 -7.150 2.371 -0.500 C42 A1IHR 29 A1IHR C43 C30 C 0 1 Y N N N N N 32.432 -17.523 -46.549 -7.242 2.089 -1.850 C43 A1IHR 30 A1IHR C44 C31 C 0 1 Y N N N N N 32.582 -16.678 -47.649 -8.310 1.356 -2.333 C44 A1IHR 31 A1IHR C45 C32 C 0 1 Y N N N N N 32.729 -17.209 -48.929 -9.288 0.906 -1.465 C45 A1IHR 32 A1IHR C46 C33 C 0 1 Y N N N N N 32.727 -18.590 -49.108 -9.196 1.187 -0.115 C46 A1IHR 33 A1IHR C47 C34 C 0 1 Y N N N N N 32.578 -19.430 -48.006 -8.125 1.916 0.368 C47 A1IHR 34 A1IHR N01 N1 N 0 1 N N N N N N 26.859 -20.317 -47.982 -1.966 -2.643 0.799 N01 A1IHR 35 A1IHR N03 N2 N 0 1 N N N N N N 24.658 -24.589 -44.578 2.877 -0.074 -0.760 N03 A1IHR 36 A1IHR N16 N3 N 0 1 N N N N N N 24.009 -23.499 -47.011 2.164 -2.966 0.268 N16 A1IHR 37 A1IHR N85 N4 N 0 1 N N N N N N 29.994 -20.275 -49.731 -5.807 -3.826 -0.713 N85 A1IHR 38 A1IHR O01 O1 O 0 1 N N N N N N 24.397 -22.513 -43.654 2.004 -0.370 1.279 O01 A1IHR 39 A1IHR O11 O2 O 0 1 N N N N N N 25.513 -29.392 -41.358 8.182 3.239 -0.179 O11 A1IHR 40 A1IHR O28 O3 O 0 1 N N N N N N 26.602 -22.505 -47.442 -0.635 -2.595 -1.010 O28 A1IHR 41 A1IHR O29 O4 O 0 1 N N N N N N 21.835 -23.364 -46.357 2.988 -3.060 -1.826 O29 A1IHR 42 A1IHR O34 O5 O 0 1 N N N N N N 29.221 -20.895 -45.297 -2.416 0.791 0.133 O34 A1IHR 43 A1IHR O36 O6 O 0 1 N N N N N N 27.351 -19.646 -45.301 -2.855 -0.278 2.015 O36 A1IHR 44 A1IHR O41 O7 O 0 1 N N N N N N 32.910 -19.524 -44.370 -5.701 3.090 1.424 O41 A1IHR 45 A1IHR CL09 CL1 CL 0 0 N N N N N N 22.879 -28.368 -40.645 8.919 0.777 1.283 CL09 A1IHR 46 A1IHR H141 H1 H 0 0 N N N N N N 25.537 -27.482 -45.509 4.794 1.304 -2.445 H141 A1IHR 47 A1IHR H121 H2 H 0 0 N N N N N N 27.087 -30.540 -40.652 8.579 5.239 -0.510 H121 A1IHR 48 A1IHR H122 H3 H 0 0 N N N N N N 26.767 -30.656 -42.416 7.991 4.330 -1.923 H122 A1IHR 49 A1IHR H123 H4 H 0 0 N N N N N N 27.538 -29.182 -41.738 6.865 4.770 -0.615 H123 A1IHR 50 A1IHR H131 H5 H 0 0 N N N N N N 26.613 -28.846 -43.749 6.199 3.247 -1.890 H131 A1IHR 51 A1IHR H041 H6 H 0 0 N N N N N N 22.564 -24.576 -44.217 4.095 -1.222 0.531 H041 A1IHR 52 A1IHR H051 H7 H 0 0 N N N N N N 22.053 -26.528 -45.536 5.535 -2.117 -1.336 H051 A1IHR 53 A1IHR H052 H8 H 0 0 N N N N N N 23.623 -26.442 -46.405 4.606 -1.115 -2.477 H052 A1IHR 54 A1IHR H071 H9 H 0 0 N N N N N N 22.118 -26.878 -42.996 7.018 -1.098 0.290 H071 A1IHR 55 A1IHR H172 H10 H 0 0 N N N N N N 22.799 -22.373 -48.330 1.891 -5.062 0.186 H172 A1IHR 56 A1IHR H171 H11 H 0 0 N N N N N N 24.320 -23.007 -49.044 1.139 -4.153 -1.151 H171 A1IHR 57 A1IHR H192 H12 H 0 0 N N N N N N 24.626 -19.719 -46.245 0.820 -2.741 2.187 H192 A1IHR 58 A1IHR H191 H13 H 0 0 N N N N N N 23.017 -20.476 -46.501 -0.606 -3.668 2.713 H191 A1IHR 59 A1IHR H193 H14 H 0 0 N N N N N N 24.313 -21.387 -45.655 0.982 -4.465 2.600 H193 A1IHR 60 A1IHR H202 H15 H 0 0 N N N N N N 24.782 -19.237 -48.646 0.004 -6.206 1.103 H202 A1IHR 61 A1IHR H201 H16 H 0 0 N N N N N N 24.629 -20.547 -49.866 -1.585 -5.412 1.214 H201 A1IHR 62 A1IHR H203 H17 H 0 0 N N N N N N 23.187 -20.010 -48.937 -0.856 -5.726 -0.380 H203 A1IHR 63 A1IHR H231 H18 H 0 0 N N N N N N 28.817 -21.112 -47.804 -2.473 -1.529 -0.929 H231 A1IHR 64 A1IHR H241 H19 H 0 0 N N N N N N 28.189 -18.120 -47.830 -4.579 -2.311 1.138 H241 A1IHR 65 A1IHR H242 H20 H 0 0 N N N N N N 29.805 -18.764 -47.380 -4.903 -1.326 -0.309 H242 A1IHR 66 A1IHR H251 H21 H 0 0 N N N N N N 28.340 -19.030 -50.024 -4.099 -3.176 -1.750 H251 A1IHR 67 A1IHR H252 H22 H 0 0 N N N N N N 29.891 -18.188 -49.687 -3.774 -4.162 -0.303 H252 A1IHR 68 A1IHR H301 H23 H 0 0 N N N N N N 27.072 -24.411 -43.329 0.937 1.784 -0.967 H301 A1IHR 69 A1IHR H311 H24 H 0 0 N N N N N N 26.739 -21.419 -43.708 0.152 1.082 1.892 H311 A1IHR 70 A1IHR H322 H25 H 0 0 N N N N N N 28.900 -22.101 -42.112 -0.802 3.463 1.391 H322 A1IHR 71 A1IHR H321 H26 H 0 0 N N N N N N 29.308 -23.034 -43.592 -0.847 3.014 -0.331 H321 A1IHR 72 A1IHR H331 H27 H 0 0 N N N N N N 28.760 -20.015 -43.468 -2.495 1.830 1.943 H331 A1IHR 73 A1IHR H371 H28 H 0 0 N N N N N N 31.361 -21.577 -43.738 -3.231 3.208 -0.680 H371 A1IHR 74 A1IHR H383 H29 H 0 0 N N N N N N 32.121 -20.172 -41.835 -2.308 4.754 1.025 H383 A1IHR 75 A1IHR H382 H30 H 0 0 N N N N N N 30.494 -19.414 -41.756 -4.055 5.015 0.804 H382 A1IHR 76 A1IHR H381 H31 H 0 0 N N N N N N 30.686 -21.167 -41.415 -3.461 4.120 2.224 H381 A1IHR 77 A1IHR H391 H32 H 0 0 N N N N N N 30.978 -18.553 -44.351 -4.827 1.309 0.559 H391 A1IHR 78 A1IHR H401 H33 H 0 0 N N N N N N 32.262 -20.937 -45.849 -5.794 4.115 -0.479 H401 A1IHR 79 A1IHR H431 H34 H 0 0 N N N N N N 32.319 -17.104 -45.560 -6.478 2.440 -2.528 H431 A1IHR 80 A1IHR H441 H35 H 0 0 N N N N N N 32.584 -15.607 -47.508 -8.382 1.137 -3.388 H441 A1IHR 81 A1IHR H451 H36 H 0 0 N N N N N N 32.844 -16.552 -49.779 -10.123 0.335 -1.842 H451 A1IHR 82 A1IHR H461 H37 H 0 0 N N N N N N 32.840 -19.009 -50.097 -9.960 0.836 0.563 H461 A1IHR 83 A1IHR H471 H38 H 0 0 N N N N N N 32.579 -20.501 -48.149 -8.051 2.132 1.424 H471 A1IHR 84 A1IHR H1 H39 H 0 1 N N N N N N 26.492 -19.561 -48.524 -2.172 -2.978 1.686 H1 A1IHR 85 A1IHR H031 H40 H 0 0 N N N N N N 25.307 -25.326 -44.768 2.941 0.447 -1.575 H031 A1IHR 86 A1IHR H161 H41 H 0 0 N N N N N N 24.907 -23.904 -46.837 2.147 -2.558 1.147 H161 A1IHR 87 A1IHR H852 H42 H 0 0 N N N N N N 30.217 -20.295 -50.706 -5.923 -4.666 -1.260 H852 A1IHR 88 A1IHR H851 H43 H 0 0 N N N N N N 30.838 -20.302 -49.196 -6.136 -3.960 0.231 H851 A1IHR 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IHR C02 C30 SING N N 1 A1IHR C02 N03 SING N N 2 A1IHR C02 O01 DOUB N N 3 A1IHR C04 C05 SING N N 4 A1IHR C04 C15 SING N N 5 A1IHR C04 N03 SING N N 6 A1IHR C05 C06 SING N N 7 A1IHR C06 C07 DOUB Y N 8 A1IHR C06 C14 SING Y N 9 A1IHR C07 C08 SING Y N 10 A1IHR C08 C10 DOUB Y N 11 A1IHR C08 CL09 SING N N 12 A1IHR C10 C13 SING Y N 13 A1IHR C10 O11 SING N N 14 A1IHR C12 O11 SING N N 15 A1IHR C13 C14 DOUB Y N 16 A1IHR C15 N16 SING N N 17 A1IHR C15 O29 DOUB N N 18 A1IHR C17 C18 SING N N 19 A1IHR C17 N16 SING N N 20 A1IHR C18 C19 SING N N 21 A1IHR C18 C20 SING N N 22 A1IHR C18 C21 SING N N 23 A1IHR C21 N01 SING N N 24 A1IHR C21 O28 DOUB N N 25 A1IHR C23 C24 SING N N 26 A1IHR C23 C35 SING N N 27 A1IHR C23 N01 SING N N 28 A1IHR C24 C25 SING N N 29 A1IHR C30 C31 DOUB N E 30 A1IHR C31 C32 SING N N 31 A1IHR C32 C33 SING N N 32 A1IHR C33 C37 SING N N 33 A1IHR C33 O34 SING N N 34 A1IHR C35 O34 SING N N 35 A1IHR C35 O36 DOUB N N 36 A1IHR C37 C38 SING N N 37 A1IHR C37 C39 SING N N 38 A1IHR C39 C40 SING N N 39 A1IHR C39 O41 SING N N 40 A1IHR C40 C42 SING N N 41 A1IHR C40 O41 SING N N 42 A1IHR C42 C43 DOUB Y N 43 A1IHR C42 C47 SING Y N 44 A1IHR C43 C44 SING Y N 45 A1IHR C44 C45 DOUB Y N 46 A1IHR C45 C46 SING Y N 47 A1IHR C46 C47 DOUB Y N 48 A1IHR N85 C25 SING N N 49 A1IHR C14 H141 SING N N 50 A1IHR C12 H121 SING N N 51 A1IHR C12 H122 SING N N 52 A1IHR C12 H123 SING N N 53 A1IHR C13 H131 SING N N 54 A1IHR C04 H041 SING N N 55 A1IHR C05 H051 SING N N 56 A1IHR C05 H052 SING N N 57 A1IHR C07 H071 SING N N 58 A1IHR C17 H172 SING N N 59 A1IHR C17 H171 SING N N 60 A1IHR C19 H192 SING N N 61 A1IHR C19 H191 SING N N 62 A1IHR C19 H193 SING N N 63 A1IHR C20 H202 SING N N 64 A1IHR C20 H201 SING N N 65 A1IHR C20 H203 SING N N 66 A1IHR C23 H231 SING N N 67 A1IHR C24 H241 SING N N 68 A1IHR C24 H242 SING N N 69 A1IHR C25 H251 SING N N 70 A1IHR C25 H252 SING N N 71 A1IHR C30 H301 SING N N 72 A1IHR C31 H311 SING N N 73 A1IHR C32 H322 SING N N 74 A1IHR C32 H321 SING N N 75 A1IHR C33 H331 SING N N 76 A1IHR C37 H371 SING N N 77 A1IHR C38 H383 SING N N 78 A1IHR C38 H382 SING N N 79 A1IHR C38 H381 SING N N 80 A1IHR C39 H391 SING N N 81 A1IHR C40 H401 SING N N 82 A1IHR C43 H431 SING N N 83 A1IHR C44 H441 SING N N 84 A1IHR C45 H451 SING N N 85 A1IHR C46 H461 SING N N 86 A1IHR C47 H471 SING N N 87 A1IHR N01 H1 SING N N 88 A1IHR N03 H031 SING N N 89 A1IHR N16 H161 SING N N 90 A1IHR N85 H852 SING N N 91 A1IHR N85 H851 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IHR InChI InChI 1.06 "InChI=1S/C34H43ClN4O7/c1-20(29-30(46-29)22-9-6-5-7-10-22)26-11-8-12-28(40)38-25(18-21-13-14-27(44-4)23(35)17-21)31(41)37-19-34(2,3)33(43)39-24(15-16-36)32(42)45-26/h5-10,12-14,17,20,24-26,29-30H,11,15-16,18-19,36H2,1-4H3,(H,37,41)(H,38,40)(H,39,43)/b12-8+/t20-,24-,25+,26-,29+,30+/m0/s1" A1IHR InChIKey InChI 1.06 MSHHVMADHYNOPF-YKWMBZHHSA-N A1IHR SMILES_CANONICAL CACTVS 3.385 "COc1ccc(C[C@H]2NC(=O)\C=C\C[C@H](OC(=O)[C@H](CCN)NC(=O)C(C)(C)CNC2=O)[C@H](C)[C@H]3O[C@@H]3c4ccccc4)cc1Cl" A1IHR SMILES CACTVS 3.385 "COc1ccc(C[CH]2NC(=O)C=CC[CH](OC(=O)[CH](CCN)NC(=O)C(C)(C)CNC2=O)[CH](C)[CH]3O[CH]3c4ccccc4)cc1Cl" A1IHR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H]1C/C=C/C(=O)N[C@@H](C(=O)NCC(C(=O)N[C@H](C(=O)O1)CCN)(C)C)Cc2ccc(c(c2)Cl)OC)[C@@H]3[C@H](O3)c4ccccc4" A1IHR SMILES "OpenEye OEToolkits" 2.0.7 "CC(C1CC=CC(=O)NC(C(=O)NCC(C(=O)NC(C(=O)O1)CCN)(C)C)Cc2ccc(c(c2)Cl)OC)C3C(O3)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id A1IHR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},10~{R},13~{E},16~{S})-3-(2-azanylethyl)-10-[(3-chloranyl-4-methoxy-phenyl)methyl]-6,6-dimethyl-16-[(1~{S})-1-[(2~{R},3~{R})-3-phenyloxiran-2-yl]ethyl]-1-oxa-4,8,11-triazacyclohexadec-13-ene-2,5,9,12-tetrone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IHR "Create component" 2024-07-09 PDBE A1IHR "Modify coordinates" 2024-07-23 PDBE A1IHR "Initial release" 2024-10-09 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IHR _pdbx_chem_comp_synonyms.name "(3S,10R,13E,16S)-3-(2-azanylethyl)-10-[(3-chloranyl-4-methoxy-phenyl)methyl]-6,6-dimethyl-16-[(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl]-1-oxa-4,8,11-triazacyclohexadec-13-ene-2,5,9,12-tetrone" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #