data_A1II9 # _chem_comp.id A1II9 _chem_comp.name "adenosine-5'-[(beta,gamma)-imido]triphosphate-adenosine-monophosphate-adenosine-monophosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H41 N16 O24 P5" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms "[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid; pNppA3" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-28 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1164.608 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1II9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9G9H _chem_comp.pdbx_subcomponent_list "ANP A A" _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1II9 P02 P1 P 0 1 N N N N N N 165.958 165.057 177.315 -8.281 -7.549 -1.449 PG ANP 1 A1II9 O75 O24 O 0 1 N N N N N N 166.485 165.982 176.243 -9.541 -7.404 -0.686 O1G ANP 2 A1II9 O01 O1 O 0 1 N N N N N N 164.471 165.265 177.481 -7.335 -8.630 -0.722 O2G ANP 3 A1II9 O74 O23 O 0 1 N N N N N N 166.224 163.624 176.918 -8.612 -8.045 -2.944 O3G ANP 4 A1II9 P04 P2 P 0 1 N N N N N N 165.797 165.989 180.093 -7.124 -5.509 0.034 PB ANP 5 A1II9 O73 O22 O 0 1 N N N N N N 165.233 167.337 179.710 -6.245 -6.486 0.714 O1B ANP 6 A1II9 O72 O21 O 0 1 N N N N N N 166.670 166.140 181.318 -8.485 -5.333 0.876 O2B ANP 7 A1II9 N03 N1 N 0 1 N N N N N N 166.733 165.381 178.800 -7.490 -6.065 -1.512 N3B ANP 8 A1II9 P06 P3 P 0 1 N N N N N N 163.966 164.506 181.867 -5.771 -3.060 1.012 PA ANP 9 A1II9 O70 O19 O 0 1 N N N N N N 163.653 163.027 181.871 -6.690 -2.971 2.169 O1A ANP 10 A1II9 O71 O20 O 0 1 N N N N N N 164.978 164.811 182.947 -4.332 -3.581 1.510 O2A ANP 11 A1II9 O05 O2 O 0 1 N N N N N N 164.554 164.933 180.379 -6.370 -4.091 -0.070 O3A ANP 12 A1II9 O07 O3 O 0 1 N N N N N N 162.572 165.351 182.156 -5.613 -1.607 0.339 "O5'" ANP 13 A1II9 C08 C5 C 0 1 N N N N N N 162.671 166.642 182.720 -5.204 -0.450 1.072 "C5'" ANP 14 A1II9 C09 C6 C 0 1 N N R N N N 162.736 166.503 184.262 -5.157 0.758 0.134 "C4'" ANP 15 A1II9 O13 O4 O 0 1 N N N N N N 161.864 167.601 184.908 -6.492 1.139 -0.262 "O4'" ANP 16 A1II9 C10 C1 C 0 1 N N S N N N 162.055 165.162 184.695 -4.597 1.993 0.875 "C3'" ANP 17 A1II9 O25 O6 O 0 1 N N N N N N 162.481 164.836 186.014 -3.210 2.167 0.581 "O3'" ANP 18 A1II9 C11 C7 C 0 1 N N R N N N 160.810 165.483 184.751 -5.422 3.173 0.314 "C2'" ANP 19 A1II9 O24 O5 O 0 1 N N N N N N 160.107 164.572 185.569 -4.569 4.112 -0.344 "O2'" ANP 20 A1II9 C12 C8 C 0 1 N N R N N N 160.839 166.970 185.441 -6.382 2.511 -0.699 "C1'" ANP 21 A1II9 N14 N2 N 0 1 Y N N N N N 160.100 168.238 185.237 -7.693 3.165 -0.661 N9 ANP 22 A1II9 C18 C10 C 0 1 Y N N N N N 159.452 168.611 184.143 -8.754 2.801 0.112 C8 ANP 23 A1II9 N17 N3 N 0 1 Y N N N N N 158.909 169.809 184.332 -9.758 3.599 -0.106 N7 ANP 24 A1II9 C16 C9 C 0 1 Y N N N N N 159.216 170.217 185.579 -9.406 4.524 -1.031 C5 ANP 25 A1II9 C19 C11 C 0 1 Y N N N N N 158.944 171.362 186.355 -10.059 5.608 -1.643 C6 ANP 26 A1II9 N20 N4 N 0 1 N N N N N N 158.148 172.460 185.807 -11.368 5.919 -1.321 N6 ANP 27 A1II9 N21 N5 N 0 1 Y N N N N N 159.422 171.431 187.593 -9.390 6.326 -2.538 N1 ANP 28 A1II9 C22 C3 C 0 1 Y N N N N N 160.145 170.444 188.108 -8.140 6.036 -2.852 C2 ANP 29 A1II9 N23 N6 N 0 1 Y N N N N N 160.426 169.352 187.414 -7.489 5.032 -2.305 N3 ANP 30 A1II9 C15 C2 C 0 1 Y N N N N N 159.975 169.216 186.156 -8.075 4.260 -1.394 C4 ANP 31 A1II9 P26 P4 P 0 1 N N N N N N 163.362 163.451 186.307 -2.064 2.145 1.711 P A 32 A1II9 O69 O18 O 0 1 N N N N N N 164.285 163.161 185.147 -2.157 0.885 2.483 OP1 A 33 A1II9 O68 O17 O 0 1 N N N N N N 162.424 162.282 186.517 -2.264 3.397 2.703 OP2 A 34 A1II9 O27 O7 O 0 1 N N N N N N 164.256 163.718 187.690 -0.617 2.240 1.011 "O5'" A 35 A1II9 C28 C4 C 0 1 N N N N N N 164.015 164.931 188.391 0.608 2.139 1.740 "C5'" A 36 A1II9 C29 C12 C 0 1 N N R N N N 165.228 165.894 188.124 1.788 2.271 0.774 "C4'" A 37 A1II9 O33 O8 O 0 1 N N N N N N 164.849 167.357 188.425 1.821 3.598 0.222 "O4'" A 38 A1II9 C30 C13 C 0 1 N N S N N N 166.210 165.591 188.927 3.112 2.057 1.533 "C3'" A 39 A1II9 OP3 O10 O 0 1 N N N N N N 167.421 165.421 188.174 3.825 0.945 0.989 "O3'" A 40 A1II9 C31 C14 C 0 1 N N R N N N 166.369 166.883 190.000 3.898 3.370 1.301 "C2'" A 41 A1II9 O44 O9 O 0 1 N N N N N N 167.745 166.985 190.475 5.280 3.101 1.054 "O2'" A 42 A1II9 C32 C15 C 0 1 N N R N N N 166.075 167.888 189.324 3.211 3.942 0.035 "C1'" A 43 A1II9 N34 N7 N 0 1 Y N N N N N 165.672 169.008 190.218 3.378 5.396 -0.032 N9 A 44 A1II9 C38 C18 C 0 1 Y N N N N N 164.437 169.438 190.435 2.533 6.329 0.490 C8 A 45 A1II9 N37 N8 N 0 1 Y N N N N N 164.452 170.453 191.291 2.988 7.525 0.248 N7 A 46 A1II9 C36 C17 C 0 1 Y N N N N N 165.735 170.680 191.635 4.150 7.434 -0.442 C5 A 47 A1II9 C39 C19 C 0 1 Y N N N N N 166.388 171.598 192.485 5.066 8.364 -0.962 C6 A 48 A1II9 N40 N9 N 0 1 N N N N N N 165.631 172.597 193.239 4.858 9.724 -0.808 N6 A 49 A1II9 N41 N10 N 0 1 Y N N N N N 167.710 171.539 192.591 6.135 7.908 -1.606 N1 A 50 A1II9 C42 C20 C 0 1 Y N N N N N 168.423 170.642 191.920 6.342 6.613 -1.757 C2 A 51 A1II9 N43 N11 N 0 1 Y N N N N N 167.849 169.765 191.112 5.512 5.706 -1.287 N3 A 52 A1II9 C35 C16 C 0 1 Y N N N N N 166.514 169.763 190.954 4.418 6.067 -0.625 C4 A 53 A1II9 P P5 P 0 1 N N N N N N 167.717 163.940 187.458 4.212 -0.356 1.855 P A 54 A1II9 OP1 O15 O 0 1 N N N N N N 166.885 163.805 186.201 4.969 0.058 3.058 OP1 A 55 A1II9 OP2 O16 O 0 1 N N N N N N 169.183 163.839 187.099 2.869 -1.122 2.304 OP2 A 56 A1II9 "O5'" O11 O 0 1 N N N N N N 167.324 162.721 188.526 5.120 -1.344 0.964 "O5'" A 57 A1II9 "C5'" C21 C 0 1 N N N N N N 167.388 161.373 188.078 5.711 -2.537 1.482 "C5'" A 58 A1II9 "C4'" C22 C 0 1 N N R N N N 168.559 160.674 188.855 6.504 -3.235 0.376 "C4'" A 59 A1II9 "O4'" O12 O 0 1 N N N N N N 169.844 161.488 188.649 7.680 -2.467 0.039 "O4'" A 60 A1II9 "C3'" C23 C 0 1 N N S N N N 168.321 160.688 190.135 7.049 -4.591 0.877 "C3'" A 61 A1II9 "O3'" O14 O 0 1 N N N N N N 167.860 159.403 190.556 6.203 -5.660 0.447 "O3'" A 62 A1II9 "C2'" C24 C 0 1 N N R N N N 169.777 161.061 190.914 8.442 -4.703 0.219 "C2'" A 63 A1II9 "O2'" O13 O 0 1 N N N N N N 170.470 159.829 191.287 8.499 -5.845 -0.639 "O2'" A 64 A1II9 "C1'" C25 C 0 1 N N R N N N 170.483 161.717 190.111 8.574 -3.402 -0.604 "C1'" A 65 A1II9 N9 N12 N 0 1 Y N N N N N 170.454 163.164 190.432 9.952 -2.906 -0.555 N9 A 66 A1II9 C8 C28 C 0 1 Y N N N N N 169.363 163.868 190.692 10.459 -2.021 0.349 C8 A 67 A1II9 N7 N13 N 0 1 Y N N N N N 169.707 165.123 190.933 11.717 -1.801 0.098 N7 A 68 A1II9 C5 C27 C 0 1 Y N N N N N 171.039 165.241 190.819 12.096 -2.530 -0.979 C5 A 69 A1II9 C6 C29 C 0 1 Y N N N N N 171.946 166.309 190.953 13.298 -2.694 -1.688 C6 A 70 A1II9 N6 N14 N 0 1 N N N N N N 171.457 167.643 191.294 14.442 -2.014 -1.309 N6 A 71 A1II9 N1 N15 N 0 1 Y N N N N N 173.242 166.087 190.771 13.311 -3.517 -2.731 N1 A 72 A1II9 C2 C30 C 0 1 Y N N N N N 173.675 164.869 190.462 12.224 -4.171 -3.100 C2 A 73 A1II9 N3 N16 N 0 1 Y N N N N N 172.847 163.843 190.326 11.077 -4.049 -2.466 N3 A 74 A1II9 C4 C26 C 0 1 Y N N N N N 171.522 163.986 190.496 10.969 -3.252 -1.407 C4 A 75 A1II9 H32 H32 H 0 1 N N N N N N 164.175 165.935 176.876 -6.490 -8.776 -1.168 HOG2 ANP 76 A1II9 H41 H41 H 0 1 N N N N N N 166.667 163.605 176.078 -9.069 -8.897 -2.984 HOG3 ANP 77 A1II9 H40 H40 H 0 1 N N N N N N 166.681 167.050 181.590 -9.110 -4.706 0.488 HOB2 ANP 78 A1II9 H25 H25 H 0 1 N N N N N N 167.145 164.524 179.111 -6.659 -6.122 -2.082 HNB1 ANP 79 A1II9 H39 H39 H 0 1 N N N N N N 165.206 164.010 183.403 -3.677 -3.664 0.802 HOA2 ANP 80 A1II9 H5 H5 H 0 1 N N N N N N 163.582 167.138 182.354 -5.915 -0.259 1.875 "H5'1" ANP 81 A1II9 H6 H6 H 0 1 N N N N N N 161.791 167.238 182.438 -4.214 -0.620 1.496 "H5'2" ANP 82 A1II9 H7 H7 H 0 1 N N N N N N 163.774 166.553 184.623 -4.549 0.533 -0.742 "H4'" ANP 83 A1II9 H1 H1 H 0 1 N N N N N N 162.293 164.367 183.973 -4.751 1.895 1.949 "H3'" ANP 84 A1II9 H17 H8 H 0 1 N N N N N N 160.338 165.574 183.761 -5.984 3.659 1.112 "H2'" ANP 85 A1II9 H33 H33 H 0 1 N N N N N N 159.190 164.819 185.603 -5.035 4.873 -0.715 "HO2'" ANP 86 A1II9 H9 H9 H 0 1 N N N N N N 160.985 166.817 186.520 -5.963 2.557 -1.704 "H1'" ANP 87 A1II9 H10 H10 H 0 1 N N N N N N 159.377 168.030 183.236 -8.761 1.971 0.804 H8 ANP 88 A1II9 H26 H26 H 0 1 N N N N N N 158.059 173.182 186.493 -11.846 5.387 -0.666 HN61 ANP 89 A1II9 H27 H27 H 0 1 N N N N N N 158.601 172.827 184.994 -11.808 6.670 -1.750 HN62 ANP 90 A1II9 H18 H2 H 0 1 N N N N N N 160.514 170.534 189.119 -7.633 6.646 -3.585 H2 ANP 91 A1II9 H38 H38 H 0 1 N N N N N N 162.610 161.607 185.875 -2.215 4.258 2.264 HOP2 A 92 A1II9 H3 H3 H 0 1 N N N N N N 163.085 165.393 188.029 0.656 2.936 2.482 "H5'" A 93 A1II9 H4 H4 H 0 1 N N N N N N 163.929 164.729 189.469 0.655 1.172 2.240 "H5''" A 94 A1II9 H11 H11 H 0 1 N N N N N N 165.512 165.811 187.064 1.694 1.538 -0.027 "H4'" A 95 A1II9 H12 H12 H 0 1 N N N N N N 166.003 164.693 189.527 2.923 1.908 2.596 "H3'" A 96 A1II9 H13 H13 H 0 1 N N N N N N 165.687 166.697 190.843 3.782 4.048 2.147 "H2'" A 97 A1II9 H34 H34 H 0 1 N N N N N N 167.819 167.716 191.077 5.814 3.892 0.903 "HO2'" A 98 A1II9 H14 H14 H 0 1 N N N N N N 166.878 168.221 188.649 3.606 3.467 -0.863 "H1'" A 99 A1II9 H15 H15 H 0 1 N N N N N N 163.549 169.023 189.982 1.621 6.110 1.024 H8 A 100 A1II9 H28 H28 H 0 1 N N N N N N 166.260 173.153 193.782 4.074 10.045 -0.336 H61 A 101 A1II9 H29 H29 H 0 1 N N N N N N 165.131 173.185 192.604 5.497 10.356 -1.172 H62 A 102 A1II9 H16 H16 H 0 1 N N N N N N 169.497 170.628 192.036 7.224 6.286 -2.287 H2 A 103 A1II9 HOP2 H37 H 0 1 N N N N N N 169.272 163.712 186.162 2.322 -1.423 1.565 HOP2 A 104 A1II9 "H5'" H17 H 0 1 N N N N N N 166.438 160.861 188.290 6.380 -2.284 2.304 "H5'" A 105 A1II9 "H5''" H18 H 0 1 N N N N N N 167.586 161.346 186.996 4.928 -3.203 1.843 "H5''" A 106 A1II9 "H4'" H19 H 0 1 N N N N N N 168.700 159.660 188.453 5.878 -3.380 -0.505 "H4'" A 107 A1II9 "H3'" H20 H 0 1 N N N N N N 167.596 161.465 190.418 7.137 -4.588 1.964 "H3'" A 108 A1II9 "HO3'" H36 H 0 1 N N N N N N 167.688 159.418 191.490 6.499 -6.535 0.735 "HO3'" A 109 A1II9 "H2'" H21 H 0 1 N N N N N N 169.517 161.627 191.821 9.221 -4.758 0.979 "H2'" A 110 A1II9 "HO2'" H35 H 0 1 N N N N N N 169.933 159.335 191.895 8.361 -6.687 -0.183 "HO2'" A 111 A1II9 "H1'" H22 H 0 1 N N N N N N 171.527 161.373 190.077 8.268 -3.571 -1.636 "H1'" A 112 A1II9 H8 H23 H 0 1 N N N N N N 168.355 163.480 190.705 9.899 -1.568 1.154 H8 A 113 A1II9 H61 H30 H 0 1 N N N N N N 172.229 168.277 191.352 14.420 -1.416 -0.545 H61 A 114 A1II9 H62 H31 H 0 1 N N N N N N 170.822 167.956 190.588 15.266 -2.135 -1.806 H62 A 115 A1II9 H2 H24 H 0 1 N N N N N N 174.733 164.711 190.317 12.279 -4.830 -3.954 H2 A 116 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1II9 O75 P02 DOUB N N 1 A1II9 O74 P02 SING N N 2 A1II9 P02 O01 SING N N 3 A1II9 P02 N03 SING N N 4 A1II9 N03 P04 SING N N 5 A1II9 O73 P04 DOUB N N 6 A1II9 P04 O05 SING N N 7 A1II9 P04 O72 SING N N 8 A1II9 O05 P06 SING N N 9 A1II9 P06 O70 DOUB N N 10 A1II9 P06 O07 SING N N 11 A1II9 P06 O71 SING N N 12 A1II9 O07 C08 SING N N 13 A1II9 C08 C09 SING N N 14 A1II9 C18 N17 DOUB Y N 15 A1II9 C18 N14 SING Y N 16 A1II9 C09 C10 SING N N 17 A1II9 C09 O13 SING N N 18 A1II9 N17 C16 SING Y N 19 A1II9 C10 C11 SING N N 20 A1II9 C10 O25 SING N N 21 A1II9 C11 C12 SING N N 22 A1II9 C11 O24 SING N N 23 A1II9 O13 C12 SING N N 24 A1II9 O69 P26 DOUB N N 25 A1II9 N14 C12 SING N N 26 A1II9 N14 C15 SING Y N 27 A1II9 C16 C15 DOUB Y N 28 A1II9 C16 C19 SING Y N 29 A1II9 N20 C19 SING N N 30 A1II9 O25 P26 SING N N 31 A1II9 C15 N23 SING Y N 32 A1II9 OP1 P DOUB N N 33 A1II9 P26 O68 SING N N 34 A1II9 P26 O27 SING N N 35 A1II9 C19 N21 DOUB Y N 36 A1II9 OP2 P SING N N 37 A1II9 N23 C22 DOUB Y N 38 A1II9 P OP3 SING N N 39 A1II9 P "O5'" SING N N 40 A1II9 N21 C22 SING Y N 41 A1II9 O27 C28 SING N N 42 A1II9 "C5'" "O5'" SING N N 43 A1II9 "C5'" "C4'" SING N N 44 A1II9 C29 C28 SING N N 45 A1II9 C29 O33 SING N N 46 A1II9 C29 C30 SING N N 47 A1II9 OP3 C30 SING N N 48 A1II9 O33 C32 SING N N 49 A1II9 "O4'" "C4'" SING N N 50 A1II9 "O4'" "C1'" SING N N 51 A1II9 "C4'" "C3'" SING N N 52 A1II9 C30 C31 SING N N 53 A1II9 C32 C31 SING N N 54 A1II9 C32 N34 SING N N 55 A1II9 C31 O44 SING N N 56 A1II9 "C1'" N9 SING N N 57 A1II9 "C1'" "C2'" SING N N 58 A1II9 "C3'" "O3'" SING N N 59 A1II9 "C3'" "C2'" SING N N 60 A1II9 N34 C38 SING Y N 61 A1II9 N34 C35 SING Y N 62 A1II9 N3 C2 DOUB Y N 63 A1II9 N3 C4 SING Y N 64 A1II9 N9 C4 SING Y N 65 A1II9 N9 C8 SING Y N 66 A1II9 C38 N37 DOUB Y N 67 A1II9 C2 N1 SING Y N 68 A1II9 C4 C5 DOUB Y N 69 A1II9 C8 N7 DOUB Y N 70 A1II9 N1 C6 DOUB Y N 71 A1II9 C5 N7 SING Y N 72 A1II9 C5 C6 SING Y N 73 A1II9 "C2'" "O2'" SING N N 74 A1II9 C6 N6 SING N N 75 A1II9 C35 N43 SING Y N 76 A1II9 C35 C36 DOUB Y N 77 A1II9 N43 C42 DOUB Y N 78 A1II9 N37 C36 SING Y N 79 A1II9 C36 C39 SING Y N 80 A1II9 C42 N41 SING Y N 81 A1II9 C39 N41 DOUB Y N 82 A1II9 C39 N40 SING N N 83 A1II9 C10 H1 SING N N 84 A1II9 C22 H18 SING N N 85 A1II9 C28 H3 SING N N 86 A1II9 C28 H4 SING N N 87 A1II9 C08 H5 SING N N 88 A1II9 C08 H6 SING N N 89 A1II9 C09 H7 SING N N 90 A1II9 C11 H17 SING N N 91 A1II9 C12 H9 SING N N 92 A1II9 C18 H10 SING N N 93 A1II9 C29 H11 SING N N 94 A1II9 C30 H12 SING N N 95 A1II9 C31 H13 SING N N 96 A1II9 C32 H14 SING N N 97 A1II9 C38 H15 SING N N 98 A1II9 C42 H16 SING N N 99 A1II9 "C5'" "H5'" SING N N 100 A1II9 "C5'" "H5''" SING N N 101 A1II9 "C4'" "H4'" SING N N 102 A1II9 "C3'" "H3'" SING N N 103 A1II9 "C2'" "H2'" SING N N 104 A1II9 "C1'" "H1'" SING N N 105 A1II9 C8 H8 SING N N 106 A1II9 C2 H2 SING N N 107 A1II9 N03 H25 SING N N 108 A1II9 N20 H26 SING N N 109 A1II9 N20 H27 SING N N 110 A1II9 N40 H28 SING N N 111 A1II9 N40 H29 SING N N 112 A1II9 N6 H61 SING N N 113 A1II9 N6 H62 SING N N 114 A1II9 O01 H32 SING N N 115 A1II9 O24 H33 SING N N 116 A1II9 O44 H34 SING N N 117 A1II9 "O2'" "HO2'" SING N N 118 A1II9 "O3'" "HO3'" SING N N 119 A1II9 OP2 HOP2 SING N N 120 A1II9 O68 H38 SING N N 121 A1II9 O71 H39 SING N N 122 A1II9 O72 H40 SING N N 123 A1II9 O74 H41 SING N N 124 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1II9 InChI InChI 1.06 "InChI=1S/C30H41N16O24P5/c31-22-13-25(37-4-34-22)44(7-40-13)28-17(48)16(47)10(65-28)1-62-73(56,57)68-20-11(66-29(18(20)49)45-8-41-14-23(32)35-5-38-26(14)45)2-63-74(58,59)69-21-12(3-64-75(60,61)70-72(54,55)43-71(51,52)53)67-30(19(21)50)46-9-42-15-24(33)36-6-39-27(15)46/h4-12,16-21,28-30,47-50H,1-3H2,(H,56,57)(H,58,59)(H,60,61)(H2,31,34,37)(H2,32,35,38)(H2,33,36,39)(H4,43,51,52,53,54,55)/t10-,11-,12-,16-,17-,18-,19-,20-,21-,28-,29-,30-/m1/s1" A1II9 InChIKey InChI 1.06 QMYRDONPMXTONA-UQTMIEBXSA-N A1II9 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[C@H]4[C@@H](O)[C@@H](O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)n6cnc7c(N)ncnc67)n8cnc9c(N)ncnc89)[C@@H](O)[C@H]3O" A1II9 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)n6cnc7c(N)ncnc67)n8cnc9c(N)ncnc89)[CH](O)[CH]3O" A1II9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@H](O[C@H]([C@@H]4O)n5cnc6c5ncnc6N)COP(=O)(O)O[C@@H]7[C@H](O[C@H]([C@@H]7O)n8cnc9c8ncnc9N)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N" A1II9 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(OC(C4O)n5cnc6c5ncnc6N)COP(=O)(O)OC7C(OC(C7O)n8cnc9c8ncnc9N)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1II9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1II9 "Create component" 2024-07-28 PDBE A1II9 "Initial release" 2025-01-29 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1II9 "[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" PDB ? 2 A1II9 pNppA3 AUTHOR ? #