data_A1IIT # _chem_comp.id A1IIT _chem_comp.name "[(2R)-2-octanoyloxy-3-[oxidanyl-[(1S,2R,3S,4R,5R,6R)-2,4,5-tris(oxidanyl)-3,6-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H49 O19 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PI(2,5)P2" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-18 _chem_comp.pdbx_modified_date 2025-07-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 746.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IIT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9G6C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IIT C4 C1 C 0 1 N N N N N N 206.834 177.148 170.469 9.549 2.273 -0.450 C4 A1IIT 1 A1IIT C5 C2 C 0 1 N N N N N N 206.757 178.179 169.347 8.260 2.760 0.215 C5 A1IIT 2 A1IIT C6 C3 C 0 1 N N N N N N 207.434 179.492 169.725 7.090 1.885 -0.239 C6 A1IIT 3 A1IIT C7 C4 C 0 1 N N N N N N 206.444 180.646 169.850 5.821 2.365 0.416 C7 A1IIT 4 A1IIT C8 C5 C 0 1 N N N N N N 206.163 182.994 170.088 3.476 2.259 0.829 C8 A1IIT 5 A1IIT C10 C6 C 0 1 N N N N N N 204.989 183.619 167.964 0.994 2.047 1.022 C10 A1IIT 6 A1IIT C13 C7 C 0 1 N N S N N N 202.998 186.711 162.994 -6.369 0.826 -0.341 C13 A1IIT 7 A1IIT C15 C8 C 0 1 N N R N N N 201.976 184.648 164.092 -5.969 -0.674 1.616 C15 A1IIT 8 A1IIT C17 C9 C 0 1 N N N N N N 204.035 184.080 171.488 3.024 -0.804 0.094 C17 A1IIT 9 A1IIT C20 C10 C 0 1 N N N N N N 205.021 181.770 174.356 4.138 -4.461 -0.125 C20 A1IIT 10 A1IIT C21 C11 C 0 1 N N N N N N 204.435 181.350 175.703 4.857 -5.240 -1.229 C21 A1IIT 11 A1IIT C22 C12 C 0 1 N N N N N N 204.108 182.539 176.604 5.056 -6.690 -0.783 C22 A1IIT 12 A1IIT C24 C13 C 0 1 N N N N N N 203.742 181.930 179.043 5.973 -8.919 -1.441 C24 A1IIT 13 A1IIT C C14 C 0 1 N N N N N N 205.088 175.000 172.267 14.468 3.049 -0.871 C A1IIT 14 A1IIT O O1 O 0 1 N N N N N N 205.357 180.439 170.271 5.849 3.309 1.170 O A1IIT 15 A1IIT C1 C15 C 0 1 N N N N N N 205.381 174.138 171.043 13.179 3.535 -0.206 C1 A1IIT 16 A1IIT C11 C16 C 0 1 N N S N N N 204.215 185.446 164.866 -4.083 0.648 0.650 C11 A1IIT 17 A1IIT C12 C17 C 0 1 N N R N N N 204.352 186.345 163.627 -4.871 0.823 -0.650 C12 A1IIT 18 A1IIT C14 C18 C 0 1 N N R N N N 202.109 185.470 162.802 -6.757 -0.500 0.317 C14 A1IIT 19 A1IIT C16 C19 C 0 1 N N R N N N 203.361 184.208 164.580 -4.471 -0.677 1.308 C16 A1IIT 20 A1IIT C18 C20 C 0 1 N N N N N N 203.981 182.758 172.251 3.220 -2.233 0.533 C18 A1IIT 21 A1IIT C19 C21 C 0 1 N N N N N N 204.279 182.952 173.737 3.939 -3.011 -0.570 C19 A1IIT 22 A1IIT C2 C22 C 0 1 N N N N N N 205.697 174.981 169.810 12.009 2.661 -0.661 C2 A1IIT 23 A1IIT C23 C23 C 0 1 N N N N N N 204.737 182.412 177.991 5.775 -7.469 -1.887 C23 A1IIT 24 A1IIT C3 C24 C 0 1 N N N N N N 207.021 175.729 169.939 10.720 3.147 0.005 C3 A1IIT 25 A1IIT C9 C25 C 0 1 N N R N N N 204.804 183.184 169.418 2.257 1.429 0.420 C9 A1IIT 26 A1IIT O1 O2 O 0 1 N N N N N N 206.834 181.935 169.463 4.658 1.743 0.163 O1 A1IIT 27 A1IIT O10 O3 O 0 1 N N N N N N 201.021 187.937 160.645 -7.264 3.596 -1.853 O10 A1IIT 28 A1IIT O11 O4 O 0 1 N N N N N N 200.828 185.850 162.372 -8.157 -0.497 0.605 O11 A1IIT 29 A1IIT O12 O5 O 0 1 N N N N N N 201.198 183.510 163.834 -6.332 -1.912 2.231 O12 A1IIT 30 A1IIT O13 O6 O 0 1 N N N N N N 203.966 183.499 163.529 -4.170 -1.756 0.420 O13 A1IIT 31 A1IIT O14 O7 O 0 1 N N N N N N 206.328 182.525 163.859 -3.741 -3.794 2.025 O14 A1IIT 32 A1IIT O15 O8 O 0 1 N N N N N N 204.478 181.567 165.174 -2.950 -3.904 -0.480 O15 A1IIT 33 A1IIT O16 O9 O 0 1 N N N N N N 204.626 181.146 162.746 -1.841 -2.362 1.182 O16 A1IIT 34 A1IIT O17 O10 O 0 1 N N N N N N 204.017 184.126 170.089 2.411 0.070 0.908 O17 A1IIT 35 A1IIT O18 O11 O 0 1 N N N N N N 204.079 185.094 172.093 3.419 -0.446 -0.990 O18 A1IIT 36 A1IIT O2 O12 O 0 1 N N N N N N 205.189 185.000 167.933 -0.155 1.342 0.547 O2 A1IIT 37 A1IIT O3 O13 O 0 1 N N N N N N 205.933 187.131 166.687 -1.765 1.717 2.454 O3 A1IIT 38 A1IIT O4 O14 O 0 1 N N N N N N 207.516 185.236 166.843 -2.021 3.189 0.419 O4 A1IIT 39 A1IIT O5 O15 O 0 1 N N N N N N 205.490 185.031 165.274 -2.683 0.645 0.361 O5 A1IIT 40 A1IIT O6 O16 O 0 1 N N N N N N 205.034 187.520 163.979 -4.508 2.061 -1.265 O6 A1IIT 41 A1IIT O7 O17 O 0 1 N N N N N N 203.270 187.288 161.741 -7.105 0.989 -1.555 O7 A1IIT 42 A1IIT O8 O18 O 0 1 N N N N N N 203.051 189.162 159.997 -9.105 2.287 -0.727 O8 A1IIT 43 A1IIT O9 O19 O 0 1 N N N N N N 202.057 189.530 162.213 -8.857 2.017 -3.224 O9 A1IIT 44 A1IIT P P1 P 0 1 N N N N N N 206.068 185.630 166.691 -1.658 1.723 0.978 P A1IIT 45 A1IIT P1 P2 P 0 1 N N N N N N 202.327 188.501 161.143 -8.105 2.224 -1.816 P1 A1IIT 46 A1IIT P2 P3 P 0 1 N N N N N N 204.866 182.157 163.839 -3.147 -2.941 0.795 P2 A1IIT 47 A1IIT H1 H1 H 0 1 N N N N N N 207.684 177.397 171.121 9.737 1.238 -0.165 H1 A1IIT 48 A1IIT H2 H2 H 0 1 N N N N N N 205.902 177.188 171.051 9.446 2.339 -1.533 H2 A1IIT 49 A1IIT H3 H3 H 0 1 N N N N N N 205.699 178.378 169.121 8.363 2.694 1.299 H3 A1IIT 50 A1IIT H4 H4 H 0 1 N N N N N N 207.252 177.769 168.454 8.073 3.795 -0.070 H4 A1IIT 51 A1IIT H5 H5 H 0 1 N N N N N N 207.945 179.360 170.690 6.987 1.951 -1.322 H5 A1IIT 52 A1IIT H6 H6 H 0 1 N N N N N N 208.173 179.744 168.950 7.278 0.850 0.046 H6 A1IIT 53 A1IIT H7 H7 H 0 1 N N N N N N 206.755 183.916 169.989 3.321 3.298 0.540 H7 A1IIT 54 A1IIT H8 H8 H 0 1 N N N N N N 206.020 182.763 171.154 3.611 2.197 1.909 H8 A1IIT 55 A1IIT H9 H9 H 0 1 N N N N N N 204.091 183.362 167.383 1.038 1.978 2.109 H9 A1IIT 56 A1IIT H10 H10 H 0 1 N N N N N N 205.863 183.108 167.533 0.925 3.094 0.727 H10 A1IIT 57 A1IIT H11 H11 H 0 1 N N N N N N 202.478 187.425 163.649 -6.599 1.649 0.336 H11 A1IIT 58 A1IIT H12 H12 H 0 1 N N N N N N 201.507 185.273 164.866 -6.199 0.149 2.293 H12 A1IIT 59 A1IIT H13 H13 H 0 1 N N N N N N 204.963 180.916 173.665 3.168 -4.918 0.069 H13 A1IIT 60 A1IIT H14 H14 H 0 1 N N N N N N 206.074 182.052 174.502 4.738 -4.483 0.785 H14 A1IIT 61 A1IIT H15 H15 H 0 1 N N N N N N 203.511 180.782 175.522 4.257 -5.218 -2.138 H15 A1IIT 62 A1IIT H16 H16 H 0 1 N N N N N N 205.165 180.709 176.219 5.827 -4.783 -1.422 H16 A1IIT 63 A1IIT H17 H17 H 0 1 N N N N N N 204.485 183.456 176.128 5.656 -6.712 0.127 H17 A1IIT 64 A1IIT H18 H18 H 0 1 N N N N N N 203.016 182.607 176.717 4.085 -7.147 -0.589 H18 A1IIT 65 A1IIT H19 H19 H 0 1 N N N N N N 204.245 181.857 180.018 6.486 -9.473 -2.227 H19 A1IIT 66 A1IIT H20 H20 H 0 1 N N N N N N 202.908 182.644 179.114 6.573 -8.940 -0.531 H20 A1IIT 67 A1IIT H21 H21 H 0 1 N N N N N N 203.355 180.941 178.755 5.003 -9.375 -1.247 H21 A1IIT 68 A1IIT H22 H22 H 0 1 N N N N N N 204.867 174.352 173.128 15.302 3.671 -0.547 H22 A1IIT 69 A1IIT H23 H23 H 0 1 N N N N N N 205.965 175.624 172.494 14.655 2.013 -0.586 H23 A1IIT 70 A1IIT H24 H24 H 0 1 N N N N N N 204.221 175.646 172.062 14.365 3.114 -1.954 H24 A1IIT 71 A1IIT H25 H25 H 0 1 N N N N N N 204.501 173.514 170.830 13.282 3.469 0.877 H25 A1IIT 72 A1IIT H26 H26 H 0 1 N N N N N N 206.244 173.492 171.262 12.991 4.570 -0.491 H26 A1IIT 73 A1IIT H27 H27 H 0 1 N N N N N N 203.730 186.027 165.664 -4.312 1.471 1.327 H27 A1IIT 74 A1IIT H28 H28 H 0 1 N N N N N N 204.935 185.793 162.875 -4.641 -0.000 -1.327 H28 A1IIT 75 A1IIT H29 H29 H 0 1 N N N N N N 202.581 184.831 162.041 -6.528 -1.322 -0.361 H29 A1IIT 76 A1IIT H30 H30 H 0 1 N N N N N N 203.265 183.596 165.489 -3.909 -0.802 2.233 H30 A1IIT 77 A1IIT H31 H31 H 0 1 N N N N N N 202.976 182.324 172.142 3.820 -2.254 1.443 H31 A1IIT 78 A1IIT H32 H32 H 0 1 N N N N N N 204.726 182.069 171.825 2.250 -2.690 0.727 H32 A1IIT 79 A1IIT H33 H33 H 0 1 N N N N N N 204.897 183.855 173.856 4.910 -2.554 -0.764 H33 A1IIT 80 A1IIT H34 H34 H 0 1 N N N N N N 203.327 183.086 174.271 3.339 -2.990 -1.480 H34 A1IIT 81 A1IIT H35 H35 H 0 1 N N N N N N 204.890 175.714 169.667 11.905 2.726 -1.744 H35 A1IIT 82 A1IIT H36 H36 H 0 1 N N N N N N 205.750 174.319 168.933 12.196 1.625 -0.375 H36 A1IIT 83 A1IIT H37 H37 H 0 1 N N N N N N 205.568 181.694 177.937 5.175 -7.447 -2.796 H37 A1IIT 84 A1IIT H38 H38 H 0 1 N N N N N N 205.122 183.396 178.295 6.745 -7.012 -2.080 H38 A1IIT 85 A1IIT H39 H39 H 0 1 N N N N N N 207.674 175.176 170.630 10.532 4.182 -0.280 H39 A1IIT 86 A1IIT H40 H40 H 0 1 N N N N N N 207.496 175.781 168.948 10.823 3.082 1.088 H40 A1IIT 87 A1IIT H41 H41 H 0 1 N N N N N N 204.291 182.211 169.415 2.174 1.417 -0.667 H41 A1IIT 88 A1IIT H42 H42 H 0 1 N N N N N N 200.931 188.117 159.717 -6.588 3.625 -2.544 H42 A1IIT 89 A1IIT H43 H43 H 0 1 N N N N N N 200.289 185.076 162.257 -8.474 -1.308 1.024 H43 A1IIT 90 A1IIT H44 H44 H 0 1 N N N N N N 201.112 182.997 164.629 -7.270 -1.980 2.455 H44 A1IIT 91 A1IIT H45 H45 H 0 1 N N N N N N 206.786 182.043 163.180 -4.597 -4.203 1.842 H45 A1IIT 92 A1IIT H46 H46 H 0 1 N N N N N N 204.163 180.680 165.049 -2.345 -4.642 -0.326 H46 A1IIT 93 A1IIT H47 H47 H 0 1 N N N N N N 208.052 186.018 166.906 -1.972 3.266 -0.544 H47 A1IIT 94 A1IIT H48 H48 H 0 1 N N N N N N 205.355 187.446 164.870 -4.970 2.238 -2.096 H48 A1IIT 95 A1IIT H49 H49 H 0 1 N N N N N N 202.400 190.372 161.937 -9.476 2.726 -3.447 H49 A1IIT 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IIT O8 P1 DOUB N N 1 A1IIT O10 P1 SING N N 2 A1IIT P1 O7 SING N N 3 A1IIT P1 O9 SING N N 4 A1IIT O7 C13 SING N N 5 A1IIT O11 C14 SING N N 6 A1IIT O16 P2 DOUB N N 7 A1IIT C14 C13 SING N N 8 A1IIT C14 C15 SING N N 9 A1IIT C13 C12 SING N N 10 A1IIT O13 P2 SING N N 11 A1IIT O13 C16 SING N N 12 A1IIT C12 O6 SING N N 13 A1IIT C12 C11 SING N N 14 A1IIT O12 C15 SING N N 15 A1IIT P2 O14 SING N N 16 A1IIT P2 O15 SING N N 17 A1IIT C15 C16 SING N N 18 A1IIT C16 C11 SING N N 19 A1IIT C11 O5 SING N N 20 A1IIT O5 P SING N N 21 A1IIT O3 P DOUB N N 22 A1IIT P O4 SING N N 23 A1IIT P O2 SING N N 24 A1IIT O2 C10 SING N N 25 A1IIT C10 C9 SING N N 26 A1IIT C5 C6 SING N N 27 A1IIT C5 C4 SING N N 28 A1IIT C9 C8 SING N N 29 A1IIT C9 O17 SING N N 30 A1IIT O1 C7 SING N N 31 A1IIT O1 C8 SING N N 32 A1IIT C6 C7 SING N N 33 A1IIT C2 C3 SING N N 34 A1IIT C2 C1 SING N N 35 A1IIT C7 O DOUB N N 36 A1IIT C3 C4 SING N N 37 A1IIT O17 C17 SING N N 38 A1IIT C1 C SING N N 39 A1IIT C17 O18 DOUB N N 40 A1IIT C17 C18 SING N N 41 A1IIT C18 C19 SING N N 42 A1IIT C19 C20 SING N N 43 A1IIT C20 C21 SING N N 44 A1IIT C21 C22 SING N N 45 A1IIT C22 C23 SING N N 46 A1IIT C23 C24 SING N N 47 A1IIT C4 H1 SING N N 48 A1IIT C4 H2 SING N N 49 A1IIT C5 H3 SING N N 50 A1IIT C5 H4 SING N N 51 A1IIT C6 H5 SING N N 52 A1IIT C6 H6 SING N N 53 A1IIT C8 H7 SING N N 54 A1IIT C8 H8 SING N N 55 A1IIT C10 H9 SING N N 56 A1IIT C10 H10 SING N N 57 A1IIT C13 H11 SING N N 58 A1IIT C15 H12 SING N N 59 A1IIT C20 H13 SING N N 60 A1IIT C20 H14 SING N N 61 A1IIT C21 H15 SING N N 62 A1IIT C21 H16 SING N N 63 A1IIT C22 H17 SING N N 64 A1IIT C22 H18 SING N N 65 A1IIT C24 H19 SING N N 66 A1IIT C24 H20 SING N N 67 A1IIT C24 H21 SING N N 68 A1IIT C H22 SING N N 69 A1IIT C H23 SING N N 70 A1IIT C H24 SING N N 71 A1IIT C1 H25 SING N N 72 A1IIT C1 H26 SING N N 73 A1IIT C11 H27 SING N N 74 A1IIT C12 H28 SING N N 75 A1IIT C14 H29 SING N N 76 A1IIT C16 H30 SING N N 77 A1IIT C18 H31 SING N N 78 A1IIT C18 H32 SING N N 79 A1IIT C19 H33 SING N N 80 A1IIT C19 H34 SING N N 81 A1IIT C2 H35 SING N N 82 A1IIT C2 H36 SING N N 83 A1IIT C23 H37 SING N N 84 A1IIT C23 H38 SING N N 85 A1IIT C3 H39 SING N N 86 A1IIT C3 H40 SING N N 87 A1IIT C9 H41 SING N N 88 A1IIT O10 H42 SING N N 89 A1IIT O11 H43 SING N N 90 A1IIT O12 H44 SING N N 91 A1IIT O14 H45 SING N N 92 A1IIT O15 H46 SING N N 93 A1IIT O4 H47 SING N N 94 A1IIT O6 H48 SING N N 95 A1IIT O9 H49 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IIT InChI InChI 1.06 "InChI=1S/C25H49O19P3/c1-3-5-7-9-11-13-18(26)39-15-17(41-19(27)14-12-10-8-6-4-2)16-40-47(37,38)44-25-22(30)23(42-45(31,32)33)20(28)21(29)24(25)43-46(34,35)36/h17,20-25,28-30H,3-16H2,1-2H3,(H,37,38)(H2,31,32,33)(H2,34,35,36)/t17-,20-,21-,22-,23+,24-,25+/m1/s1" A1IIT InChIKey InChI 1.06 UKNJNTJYGDDGCJ-DDHCIDQLSA-N A1IIT SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@H]1[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O)[C@H]1O[P](O)(O)=O)OC(=O)CCCCCCC" A1IIT SMILES CACTVS 3.385 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O[P](O)(O)=O)OC(=O)CCCCCCC" A1IIT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OC[C@H](COP(=O)(O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@H]1OP(=O)(O)O)O)O)OP(=O)(O)O)O)OC(=O)CCCCCCC" A1IIT SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)O)O)OP(=O)(O)O)O)OC(=O)CCCCCCC" # _pdbx_chem_comp_identifier.comp_id A1IIT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-2-octanoyloxy-3-[oxidanyl-[(1~{S},2~{R},3~{S},4~{R},5~{R},6~{R})-2,4,5-tris(oxidanyl)-3,6-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IIT "Create component" 2024-07-18 PDBE A1IIT "Modify synonyms" 2024-07-22 PDBE A1IIT "Initial release" 2025-07-30 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IIT _pdbx_chem_comp_synonyms.name "PI(2,5)P2" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #