data_A1IJ2 # _chem_comp.id A1IJ2 _chem_comp.name "1-(3-methyl-2-oxidanylidene-1,3-benzoxazol-6-yl)-2,4-bis(oxidanylidene)-3-[(1R)-4-(trifluoromethyl)-2,3-dihydro-1H-inden-1-yl]pyrimidine-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H16 F3 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-03 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.385 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IJ2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GCD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IJ2 N3 N1 N 0 1 N N N N N N -25.136 -24.755 1.630 1.604 -0.440 -0.150 N3 A1IJ2 1 A1IJ2 C4 C1 C 0 1 N N N N N N -24.414 -25.121 0.489 0.749 0.542 0.173 C4 A1IJ2 2 A1IJ2 C6 C2 C 0 1 N N N N N N -25.679 -27.179 0.403 -1.078 -0.917 0.165 C6 A1IJ2 3 A1IJ2 C8 C3 C 0 1 N N S N N N -23.977 -26.838 -1.328 -1.454 1.432 0.684 C8 A1IJ2 4 A1IJ2 C10 C4 C 0 1 Y N N N N N -25.424 -25.533 -3.129 -2.702 1.991 -1.565 C10 A1IJ2 5 A1IJ2 C13 C5 C 0 1 Y N N N N N -23.000 -24.608 -4.119 -4.943 0.904 -0.374 C13 A1IJ2 6 A1IJ2 C20 C6 C 0 1 N N N N N N -22.449 -26.829 -1.099 -2.082 1.194 2.074 C20 A1IJ2 7 A1IJ2 C22 C7 C 0 1 Y N N N N N -24.904 -23.534 2.256 2.967 -0.143 -0.293 C22 A1IJ2 8 A1IJ2 C24 C8 C 0 1 Y N N N N N -25.658 -21.291 2.652 5.159 0.065 0.660 C24 A1IJ2 9 A1IJ2 C26 C9 C 0 1 Y N N N N N -23.614 -22.070 3.660 4.809 0.526 -1.680 C26 A1IJ2 10 A1IJ2 F16 F1 F 0 1 N N N N N N -21.857 -23.289 -5.676 -7.244 0.374 -0.615 F16 A1IJ2 11 A1IJ2 C14 C10 C 0 1 N N N N N N -21.655 -24.106 -4.652 -6.167 0.311 0.275 C14 A1IJ2 12 A1IJ2 F17 F2 F 0 1 N N N N N N -20.919 -25.136 -5.049 -5.917 -1.023 0.612 F17 A1IJ2 13 A1IJ2 F15 F3 F 0 1 N N N N N N -21.013 -23.465 -3.687 -6.476 1.034 1.433 F15 A1IJ2 14 A1IJ2 C12 C11 C 0 1 Y N N N N N -24.188 -24.222 -4.722 -5.018 1.398 -1.661 C12 A1IJ2 15 A1IJ2 C11 C12 C 0 1 Y N N N N N -25.400 -24.687 -4.229 -3.895 1.942 -2.258 C11 A1IJ2 16 A1IJ2 C9 C13 C 0 1 Y N N N N N -24.240 -25.917 -2.521 -2.625 1.496 -0.274 C9 A1IJ2 17 A1IJ2 C18 C14 C 0 1 Y N N N N N -23.034 -25.454 -3.024 -3.747 0.952 0.323 C18 A1IJ2 18 A1IJ2 C19 C15 C 0 1 N N N N N N -21.849 -25.991 -2.227 -3.407 0.485 1.722 C19 A1IJ2 19 A1IJ2 N5 N2 N 0 1 N N N N N N -24.691 -26.349 -0.128 -0.568 0.321 0.330 N5 A1IJ2 20 A1IJ2 O21 O1 O 0 1 N N N N N N -23.557 -24.360 0.051 1.178 1.669 0.328 O21 A1IJ2 21 A1IJ2 O7 O2 O 0 1 N N N N N N -25.901 -28.245 -0.159 -2.270 -1.122 0.301 O7 A1IJ2 22 A1IJ2 C1 C16 C 0 1 N N N N N N -26.397 -26.805 1.534 -0.163 -2.012 -0.196 C1 A1IJ2 23 A1IJ2 C33 C17 C 0 1 N N N N N N -27.484 -27.702 2.143 -0.663 -3.379 -0.400 C33 A1IJ2 24 A1IJ2 O34 O3 O 0 1 N N N N N N -27.550 -28.901 1.801 0.108 -4.270 -0.697 O34 A1IJ2 25 A1IJ2 O35 O4 O 0 1 N N N N N N -28.228 -27.185 2.995 -1.977 -3.644 -0.257 O35 A1IJ2 26 A1IJ2 C2 C18 C 0 1 N N N N N N -26.124 -25.590 2.140 1.180 -1.718 -0.337 C2 A1IJ2 27 A1IJ2 C23 C19 C 0 1 Y N N N N N -25.833 -22.526 2.057 3.812 -0.229 0.803 C23 A1IJ2 28 A1IJ2 O30 O5 O 0 1 N N N N N N -26.403 -20.151 2.620 6.200 0.068 1.528 O30 A1IJ2 29 A1IJ2 C29 C20 C 0 1 N N N N N N -25.742 -19.253 3.397 7.316 0.434 0.878 C29 A1IJ2 30 A1IJ2 O31 O6 O 0 1 N N N N N N -26.116 -18.104 3.607 8.420 0.533 1.378 O31 A1IJ2 31 A1IJ2 N28 N3 N 0 1 N N N N N N -24.642 -19.809 3.885 7.023 0.673 -0.416 N28 A1IJ2 32 A1IJ2 C32 C21 C 0 1 N N N N N N -23.668 -19.143 4.769 7.967 1.094 -1.454 C32 A1IJ2 33 A1IJ2 C25 C22 C 0 1 Y N N N N N -24.547 -21.062 3.455 5.656 0.447 -0.586 C25 A1IJ2 34 A1IJ2 C27 C23 C 0 1 Y N N N N N -23.792 -23.313 3.059 3.468 0.233 -1.534 C27 A1IJ2 35 A1IJ2 H8 H1 H 0 1 N N N N N N -24.302 -27.860 -1.574 -0.905 2.374 0.674 H8 A1IJ2 36 A1IJ2 H10 H2 H 0 1 N N N N N N -26.368 -25.893 -2.746 -1.826 2.416 -2.032 H10 A1IJ2 37 A1IJ2 H20 H3 H 0 1 N N N N N N -22.053 -27.855 -1.135 -1.447 0.550 2.681 H20 A1IJ2 38 A1IJ2 H8L H4 H 0 1 N N N N N N -22.213 -26.379 -0.124 -2.269 2.141 2.582 H8L A1IJ2 39 A1IJ2 H26 H5 H 0 1 N N N N N N -22.752 -21.890 4.285 5.197 0.818 -2.645 H26 A1IJ2 40 A1IJ2 H12 H6 H 0 1 N N N N N N -24.170 -23.560 -5.575 -5.952 1.358 -2.202 H12 A1IJ2 41 A1IJ2 H11 H7 H 0 1 N N N N N N -26.325 -24.390 -4.702 -3.952 2.329 -3.265 H11 A1IJ2 42 A1IJ2 H19 H8 H 0 1 N N N N N N -21.208 -26.614 -2.868 -3.273 -0.597 1.737 H19 A1IJ2 43 A1IJ2 H8M H9 H 0 1 N N N N N N -21.258 -25.160 -1.814 -4.191 0.780 2.420 H8M A1IJ2 44 A1IJ2 H1 H10 H 0 1 N N N N N N -28.832 -27.839 3.327 -2.259 -4.557 -0.402 H1 A1IJ2 45 A1IJ2 H2 H11 H 0 1 N N N N N N -26.682 -25.289 3.014 1.885 -2.495 -0.593 H2 A1IJ2 46 A1IJ2 H23 H12 H 0 1 N N N N N N -26.697 -22.706 1.435 3.422 -0.525 1.765 H23 A1IJ2 47 A1IJ2 H34 H13 H 0 1 N N N N N N -22.857 -19.844 5.015 8.964 1.188 -1.023 H34 A1IJ2 48 A1IJ2 H33 H14 H 0 1 N N N N N N -23.250 -18.264 4.257 7.986 0.350 -2.251 H33 A1IJ2 49 A1IJ2 H32 H15 H 0 1 N N N N N N -24.171 -18.824 5.694 7.655 2.055 -1.862 H32 A1IJ2 50 A1IJ2 H27 H16 H 0 1 N N N N N N -23.070 -24.101 3.216 2.807 0.294 -2.386 H27 A1IJ2 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IJ2 C14 F16 SING N N 1 A1IJ2 C14 F17 SING N N 2 A1IJ2 C14 F15 SING N N 3 A1IJ2 C13 C14 SING N N 4 A1IJ2 C13 C12 DOUB Y N 5 A1IJ2 C13 C18 SING Y N 6 A1IJ2 C12 C11 SING Y N 7 A1IJ2 C11 C10 DOUB Y N 8 A1IJ2 C9 C10 SING Y N 9 A1IJ2 C9 C18 DOUB Y N 10 A1IJ2 C8 C9 SING N N 11 A1IJ2 C18 C19 SING N N 12 A1IJ2 C19 C20 SING N N 13 A1IJ2 C8 C20 SING N N 14 A1IJ2 C8 N5 SING N N 15 A1IJ2 N5 C4 SING N N 16 A1IJ2 N5 C6 SING N N 17 A1IJ2 C4 O21 DOUB N N 18 A1IJ2 C4 N3 SING N N 19 A1IJ2 C6 O7 DOUB N N 20 A1IJ2 C6 C1 SING N N 21 A1IJ2 C1 C33 SING N N 22 A1IJ2 C1 C2 DOUB N N 23 A1IJ2 C33 O34 DOUB N N 24 A1IJ2 C33 O35 SING N N 25 A1IJ2 N3 C2 SING N N 26 A1IJ2 N3 C22 SING N N 27 A1IJ2 C22 C23 DOUB Y N 28 A1IJ2 C22 C27 SING Y N 29 A1IJ2 C24 C23 SING Y N 30 A1IJ2 C24 O30 SING N N 31 A1IJ2 C24 C25 DOUB Y N 32 A1IJ2 C29 O30 SING N N 33 A1IJ2 C29 O31 DOUB N N 34 A1IJ2 C29 N28 SING N N 35 A1IJ2 N28 C32 SING N N 36 A1IJ2 N28 C25 SING N N 37 A1IJ2 C25 C26 SING Y N 38 A1IJ2 C26 C27 DOUB Y N 39 A1IJ2 C8 H8 SING N N 40 A1IJ2 C10 H10 SING N N 41 A1IJ2 C20 H20 SING N N 42 A1IJ2 C20 H8L SING N N 43 A1IJ2 C26 H26 SING N N 44 A1IJ2 C12 H12 SING N N 45 A1IJ2 C11 H11 SING N N 46 A1IJ2 C19 H19 SING N N 47 A1IJ2 C19 H8M SING N N 48 A1IJ2 O35 H1 SING N N 49 A1IJ2 C2 H2 SING N N 50 A1IJ2 C23 H23 SING N N 51 A1IJ2 C32 H34 SING N N 52 A1IJ2 C32 H33 SING N N 53 A1IJ2 C32 H32 SING N N 54 A1IJ2 C27 H27 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IJ2 InChI InChI 1.06 "InChI=1S/C23H16F3N3O6/c1-27-17-7-5-11(9-18(17)35-22(27)34)28-10-14(20(31)32)19(30)29(21(28)33)16-8-6-12-13(16)3-2-4-15(12)23(24,25)26/h2-5,7,9-10,16H,6,8H2,1H3,(H,31,32)/t16-/m0/s1" A1IJ2 InChIKey InChI 1.06 JDARDSVOVYVQST-INIZCTEOSA-N A1IJ2 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)Oc2cc(ccc12)N3C=C(C(O)=O)C(=O)N([C@H]4CCc5c4cccc5C(F)(F)F)C3=O" A1IJ2 SMILES CACTVS 3.385 "CN1C(=O)Oc2cc(ccc12)N3C=C(C(O)=O)C(=O)N([CH]4CCc5c4cccc5C(F)(F)F)C3=O" A1IJ2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2ccc(cc2OC1=O)N3C=C(C(=O)N(C3=O)[C@@H]4CCc5c4cccc5C(F)(F)F)C(=O)O" A1IJ2 SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2ccc(cc2OC1=O)N3C=C(C(=O)N(C3=O)C4CCc5c4cccc5C(F)(F)F)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IJ2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(3-methyl-2-oxidanylidene-1,3-benzoxazol-6-yl)-2,4-bis(oxidanylidene)-3-[(1~{R})-4-(trifluoromethyl)-2,3-dihydro-1~{H}-inden-1-yl]pyrimidine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IJ2 "Create component" 2024-08-03 PDBE A1IJ2 "Initial release" 2024-11-27 RCSB #