data_A1IJ3 # _chem_comp.id A1IJ3 _chem_comp.name "3-[[2-methyl-3-(trifluoromethyl)phenyl]methyl]-2,4-bis(oxidanylidene)-1-[4-(2-oxidanylideneimidazolidin-1-yl)phenyl]pyrimidine-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H19 F3 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-03 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.416 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GC9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IJ3 C4 C1 C 0 1 Y N N N N N -22.981 -25.266 -2.979 -4.031 0.891 0.568 C4 A1IJ3 1 A1IJ3 C5 C2 C 0 1 Y N N N N N -23.093 -24.456 -4.119 -4.630 1.642 -0.426 C5 A1IJ3 2 A1IJ3 C6 C3 C 0 1 Y N N N N N -24.357 -24.151 -4.630 -4.173 1.555 -1.728 C6 A1IJ3 3 A1IJ3 C7 C4 C 0 1 N N N N N N -21.866 -23.870 -4.776 -5.780 2.556 -0.092 C7 A1IJ3 4 A1IJ3 C15 C5 C 0 1 N N N N N N -26.501 -26.771 1.497 -0.097 -3.414 -0.179 C15 A1IJ3 5 A1IJ3 C20 C6 C 0 1 Y N N N N N -25.584 -21.410 3.106 4.652 -0.533 0.785 C20 A1IJ3 6 A1IJ3 C21 C7 C 0 1 Y N N N N N -24.579 -21.361 4.080 4.725 0.676 0.105 C21 A1IJ3 7 A1IJ3 C22 C8 C 0 1 Y N N N N N -23.772 -22.490 4.286 3.600 1.182 -0.534 C22 A1IJ3 8 A1IJ3 C26 C9 C 0 1 N N N N N N -24.295 -18.055 5.425 8.195 2.059 0.281 C26 A1IJ3 9 A1IJ3 C28 C10 C 0 1 N N N N N N -24.146 -20.218 6.138 6.096 2.609 -0.455 C28 A1IJ3 10 A1IJ3 O29 O1 O 0 1 N N N N N N -24.002 -21.178 6.931 5.187 3.244 -0.955 O29 A1IJ3 11 A1IJ3 N27 N1 N 0 1 N N N N N N -23.773 -18.974 6.447 7.351 3.070 -0.373 N27 A1IJ3 12 A1IJ3 C25 C11 C 0 1 N N N N N N -24.976 -18.981 4.433 7.221 0.902 0.581 C25 A1IJ3 13 A1IJ3 N24 N2 N 0 1 N N N N N N -24.394 -20.257 4.806 5.932 1.384 0.063 N24 A1IJ3 14 A1IJ3 C19 C12 C 0 1 Y N N N N N -25.785 -22.568 2.352 3.462 -1.231 0.826 C19 A1IJ3 15 A1IJ3 C23 C13 C 0 1 Y N N N N N -23.969 -23.632 3.529 2.410 0.484 -0.492 C23 A1IJ3 16 A1IJ3 C18 C14 C 0 1 Y N N N N N -24.962 -23.656 2.563 2.336 -0.722 0.192 C18 A1IJ3 17 A1IJ3 N17 N3 N 0 1 N N N N N N -25.185 -24.779 1.797 1.128 -1.432 0.234 N17 A1IJ3 18 A1IJ3 C30 C15 C 0 1 N N N N N N -24.449 -25.075 0.655 0.033 -0.834 0.730 C30 A1IJ3 19 A1IJ3 O31 O2 O 0 1 N N N N N N -23.536 -24.359 0.252 0.119 0.310 1.131 O31 A1IJ3 20 A1IJ3 C16 C16 C 0 1 N N N N N N -26.194 -25.625 2.216 1.094 -2.713 -0.219 C16 A1IJ3 21 A1IJ3 C32 C17 C 0 1 N N N N N N -27.610 -27.699 2.049 -0.176 -4.800 -0.658 C32 A1IJ3 22 A1IJ3 O33 O3 O 0 1 N N N N N N -27.516 -28.887 1.682 0.817 -5.348 -1.098 O33 A1IJ3 23 A1IJ3 O34 O4 O 0 1 N N N N N N -28.358 -27.291 2.980 -1.347 -5.465 -0.610 O34 A1IJ3 24 A1IJ3 C14 C18 C 0 1 N N N N N N -25.763 -27.077 0.346 -1.284 -2.732 0.364 C14 A1IJ3 25 A1IJ3 O35 O5 O 0 1 N N N N N N -25.942 -28.053 -0.397 -2.357 -3.303 0.422 O35 A1IJ3 26 A1IJ3 N13 N4 N 0 1 N N N N N N -24.771 -26.219 -0.045 -1.155 -1.460 0.796 N13 A1IJ3 27 A1IJ3 C12 C19 C 0 1 N N N N N N -24.070 -26.673 -1.221 -2.316 -0.757 1.347 C12 A1IJ3 28 A1IJ3 C3 C20 C 0 1 Y N N N N N -24.142 -25.755 -2.394 -2.973 0.057 0.262 C3 A1IJ3 29 A1IJ3 C2 C21 C 0 1 Y N N N N N -25.399 -25.452 -2.896 -2.516 -0.031 -1.040 C2 A1IJ3 30 A1IJ3 C1 C22 C 0 1 Y N N N N N -25.510 -24.647 -4.028 -3.117 0.716 -2.035 C1 A1IJ3 31 A1IJ3 F10 F1 F 0 1 N N N N N N -22.252 -23.153 -5.786 -6.214 3.204 -1.253 F10 A1IJ3 32 A1IJ3 F8 F2 F 0 1 N N N N N N -21.045 -24.802 -5.244 -6.832 1.804 0.444 F8 A1IJ3 33 A1IJ3 F9 F3 F 0 1 N N N N N N -21.287 -23.087 -3.857 -5.363 3.507 0.845 F9 A1IJ3 34 A1IJ3 C11 C23 C 0 1 N N N N N N -21.645 -25.666 -2.372 -4.530 0.986 1.987 C11 A1IJ3 35 A1IJ3 H6 H1 H 0 1 N N N N N N -24.441 -23.522 -5.504 -4.640 2.141 -2.505 H6 A1IJ3 36 A1IJ3 H20 H2 H 0 1 N N N N N N -26.209 -20.545 2.937 5.528 -0.929 1.277 H20 A1IJ3 37 A1IJ3 H22 H3 H 0 1 N N N N N N -22.996 -22.468 5.037 3.656 2.122 -1.062 H22 A1IJ3 38 A1IJ3 H26 H4 H 0 1 N N N N N N -25.016 -17.348 5.862 8.987 1.728 -0.391 H26 A1IJ3 39 A1IJ3 H6O H5 H 0 1 N N N N N N -23.479 -17.496 4.945 8.616 2.453 1.206 H6O A1IJ3 40 A1IJ3 H27 H6 H 0 1 N N N N N N -23.228 -18.710 7.243 7.655 3.933 -0.695 H27 A1IJ3 41 A1IJ3 H25 H7 H 0 1 N N N N N N -26.068 -18.981 4.564 7.530 -0.002 0.057 H25 A1IJ3 42 A1IJ3 H6N H8 H 0 1 N N N N N N -24.731 -18.713 3.395 7.161 0.721 1.654 H6N A1IJ3 43 A1IJ3 H19 H9 H 0 1 N N N N N N -26.573 -22.612 1.615 3.407 -2.173 1.352 H19 A1IJ3 44 A1IJ3 H23 H10 H 0 1 N N N N N N -23.350 -24.502 3.691 1.535 0.877 -0.989 H23 A1IJ3 45 A1IJ3 H16 H11 H 0 1 N N N N N N -26.749 -25.392 3.112 1.988 -3.179 -0.605 H16 A1IJ3 46 A1IJ3 H1 H12 H 0 1 N N N N N N -28.832 -28.026 3.351 -1.350 -6.375 -0.936 H1 A1IJ3 47 A1IJ3 H6M H13 H 0 1 N N N N N N -23.011 -26.805 -0.956 -3.029 -1.484 1.737 H6M A1IJ3 48 A1IJ3 H6L H14 H 0 1 N N N N N N -24.497 -27.642 -1.520 -1.994 -0.097 2.152 H6L A1IJ3 49 A1IJ3 H2 H15 H 0 1 N N N N N N -26.285 -25.837 -2.413 -1.688 -0.683 -1.279 H2 A1IJ3 50 A1IJ3 H14 H16 H 0 1 N N N N N N -26.482 -24.410 -4.435 -2.760 0.648 -3.052 H14 A1IJ3 51 A1IJ3 H11 H17 H 0 1 N N N N N N -21.294 -26.598 -2.839 -5.372 0.308 2.122 H11 A1IJ3 52 A1IJ3 H12 H18 H 0 1 N N N N N N -20.909 -24.868 -2.548 -3.728 0.711 2.673 H12 A1IJ3 53 A1IJ3 H13 H19 H 0 1 N N N N N N -21.766 -25.821 -1.290 -4.849 2.007 2.192 H13 A1IJ3 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IJ3 C28 O29 DOUB N N 1 A1IJ3 C28 N27 SING N N 2 A1IJ3 C28 N24 SING N N 3 A1IJ3 C26 N27 SING N N 4 A1IJ3 C26 C25 SING N N 5 A1IJ3 N24 C25 SING N N 6 A1IJ3 N24 C21 SING N N 7 A1IJ3 C21 C20 DOUB Y N 8 A1IJ3 C21 C22 SING Y N 9 A1IJ3 C20 C19 SING Y N 10 A1IJ3 C18 C19 DOUB Y N 11 A1IJ3 C22 C23 DOUB Y N 12 A1IJ3 C18 C23 SING Y N 13 A1IJ3 C18 N17 SING N N 14 A1IJ3 N17 C30 SING N N 15 A1IJ3 N17 C16 SING N N 16 A1IJ3 C30 O31 DOUB N N 17 A1IJ3 C30 N13 SING N N 18 A1IJ3 C15 C16 DOUB N N 19 A1IJ3 C15 C32 SING N N 20 A1IJ3 C15 C14 SING N N 21 A1IJ3 C32 O33 DOUB N N 22 A1IJ3 C32 O34 SING N N 23 A1IJ3 C14 O35 DOUB N N 24 A1IJ3 C14 N13 SING N N 25 A1IJ3 N13 C12 SING N N 26 A1IJ3 C3 C12 SING N N 27 A1IJ3 C3 C2 SING Y N 28 A1IJ3 C3 C4 DOUB Y N 29 A1IJ3 C2 C1 DOUB Y N 30 A1IJ3 C1 C6 SING Y N 31 A1IJ3 C5 C6 DOUB Y N 32 A1IJ3 C5 C7 SING N N 33 A1IJ3 C5 C4 SING Y N 34 A1IJ3 C7 F10 SING N N 35 A1IJ3 C7 F8 SING N N 36 A1IJ3 C7 F9 SING N N 37 A1IJ3 C4 C11 SING N N 38 A1IJ3 C6 H6 SING N N 39 A1IJ3 C20 H20 SING N N 40 A1IJ3 C22 H22 SING N N 41 A1IJ3 C26 H26 SING N N 42 A1IJ3 C26 H6O SING N N 43 A1IJ3 N27 H27 SING N N 44 A1IJ3 C25 H25 SING N N 45 A1IJ3 C25 H6N SING N N 46 A1IJ3 C19 H19 SING N N 47 A1IJ3 C23 H23 SING N N 48 A1IJ3 C16 H16 SING N N 49 A1IJ3 O34 H1 SING N N 50 A1IJ3 C12 H6M SING N N 51 A1IJ3 C12 H6L SING N N 52 A1IJ3 C2 H2 SING N N 53 A1IJ3 C1 H14 SING N N 54 A1IJ3 C11 H11 SING N N 55 A1IJ3 C11 H12 SING N N 56 A1IJ3 C11 H13 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IJ3 InChI InChI 1.06 "InChI=1S/C23H19F3N4O5/c1-13-14(3-2-4-18(13)23(24,25)26)11-30-19(31)17(20(32)33)12-29(22(30)35)16-7-5-15(6-8-16)28-10-9-27-21(28)34/h2-8,12H,9-11H2,1H3,(H,27,34)(H,32,33)" A1IJ3 InChIKey InChI 1.06 MUZPDPKTCZSNCS-UHFFFAOYSA-N A1IJ3 SMILES_CANONICAL CACTVS 3.385 "Cc1c(CN2C(=O)N(C=C(C(O)=O)C2=O)c3ccc(cc3)N4CCNC4=O)cccc1C(F)(F)F" A1IJ3 SMILES CACTVS 3.385 "Cc1c(CN2C(=O)N(C=C(C(O)=O)C2=O)c3ccc(cc3)N4CCNC4=O)cccc1C(F)(F)F" A1IJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1C(F)(F)F)CN2C(=O)C(=CN(C2=O)c3ccc(cc3)N4CCNC4=O)C(=O)O" A1IJ3 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1C(F)(F)F)CN2C(=O)C(=CN(C2=O)c3ccc(cc3)N4CCNC4=O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IJ3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[2-methyl-3-(trifluoromethyl)phenyl]methyl]-2,4-bis(oxidanylidene)-1-[4-(2-oxidanylideneimidazolidin-1-yl)phenyl]pyrimidine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IJ3 "Create component" 2024-08-03 PDBE A1IJ3 "Initial release" 2024-11-27 RCSB #