data_A1IJB # _chem_comp.id A1IJB _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-2-(methylsulfanylmethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N10 O9 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-29 _chem_comp.pdbx_modified_date 2025-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 626.539 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IJB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GAB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IJB C1 C1 C 0 1 Y N N N N N -50.492 12.194 -0.351 -6.583 3.059 0.285 C1 A1IJB 1 A1IJB C2 C2 C 0 1 Y N N N N N -50.440 13.502 0.081 -5.432 2.568 -0.354 C2 A1IJB 2 A1IJB N1 N1 N 0 1 Y N N N N N -49.327 14.233 0.278 -4.655 3.413 -1.024 N1 A1IJB 3 A1IJB C3 C3 C 0 1 Y N N N N N -48.247 13.572 -0.136 -4.956 4.692 -1.091 C3 A1IJB 4 A1IJB N2 N2 N 0 1 Y N N N N N -48.143 12.313 -0.605 -6.026 5.200 -0.507 N2 A1IJB 5 A1IJB C4 C4 C 0 1 Y N N N N N -49.290 11.596 -0.752 -6.865 4.432 0.180 C4 A1IJB 6 A1IJB N3 N3 N 0 1 Y N N N N N -51.804 11.748 -0.322 -7.186 2.006 0.886 N3 A1IJB 7 A1IJB N4 N4 N 0 1 Y N N N N N -51.729 13.825 0.430 -5.404 1.220 -0.098 N4 A1IJB 8 A1IJB C5 C5 C 0 1 Y N N N N N -52.492 12.758 0.153 -6.496 0.926 0.663 C5 A1IJB 9 A1IJB N5 N5 N 0 1 N N N N N N -49.223 10.364 -1.245 -7.984 4.974 0.789 N5 A1IJB 10 A1IJB C6 C6 C 0 1 N N R N N N -52.203 15.133 0.925 -4.386 0.272 -0.558 C6 A1IJB 11 A1IJB O1 O1 O 0 1 N N N N N N -53.276 14.909 1.823 -4.926 -1.067 -0.591 O1 A1IJB 12 A1IJB C7 C7 C 0 1 N N S N N N -54.461 15.597 1.354 -3.777 -1.941 -0.561 C7 A1IJB 13 A1IJB C8 C8 C 0 1 N N S N N N -54.260 15.689 -0.164 -2.809 -1.287 0.450 C8 A1IJB 14 A1IJB C9 C9 C 0 1 N N R N N N -52.752 16.024 -0.193 -3.220 0.203 0.452 C9 A1IJB 15 A1IJB O2 O2 O 0 1 N N N N N N -52.498 17.393 0.075 -2.132 1.022 0.018 O2 A1IJB 16 A1IJB O3 O3 O 0 1 N N N N N N -55.092 16.721 -0.722 -1.456 -1.435 0.016 O3 A1IJB 17 A1IJB P1 P1 P 0 1 N N N N N N -56.229 16.267 -1.796 -0.338 -2.206 0.880 P1 A1IJB 18 A1IJB O4 O4 O 0 1 N N N N N N -56.644 17.768 -2.240 1.093 -2.067 0.154 O4 A1IJB 19 A1IJB O5 O5 O 0 1 N N N N N N -55.626 15.717 -3.046 -0.263 -1.611 2.234 O5 A1IJB 20 A1IJB O6 O6 O 0 1 N N N N N N -57.305 15.526 -1.070 -0.730 -3.763 0.999 O6 A1IJB 21 A1IJB S1 S1 S 0 1 N N N N N N -55.934 13.180 1.398 -5.273 -4.104 -1.313 S1 A1IJB 22 A1IJB C10 C10 C 0 1 N N N N N N -55.738 14.926 1.844 -4.181 -3.337 -0.084 C10 A1IJB 23 A1IJB C11 C11 C 0 1 N N N N N N -55.247 12.407 2.862 -5.638 -5.723 -0.581 C11 A1IJB 24 A1IJB C12 C12 C 0 1 N N N N N N -57.842 18.431 -1.722 2.307 -2.555 0.727 C12 A1IJB 25 A1IJB C13 C13 C 0 1 N N R N N N -57.830 19.883 -2.158 3.472 -2.261 -0.220 C13 A1IJB 26 A1IJB C14 C14 C 0 1 N N S N N N -57.394 20.128 -3.608 4.770 -2.877 0.338 C14 A1IJB 27 A1IJB C15 C15 C 0 1 N N R N N N -56.862 21.551 -3.510 5.727 -1.670 0.492 C15 A1IJB 28 A1IJB C16 C16 C 0 1 N N R N N N -56.104 21.455 -2.183 5.099 -0.632 -0.472 C16 A1IJB 29 A1IJB O7 O7 O 0 1 N N N N N N -56.881 20.626 -1.348 3.679 -0.841 -0.314 O7 A1IJB 30 A1IJB O8 O8 O 0 1 N N N N N N -58.503 19.934 -4.491 5.308 -3.828 -0.583 O8 A1IJB 31 A1IJB O9 O9 O 0 1 N N N N N N -57.911 22.501 -3.398 7.051 -2.014 0.079 O9 A1IJB 32 A1IJB N6 N6 N 0 1 Y N N N N N -54.737 20.923 -2.222 5.467 0.729 -0.075 N6 A1IJB 33 A1IJB C17 C17 C 0 1 Y N N N N N -53.641 21.480 -2.826 6.614 1.396 -0.427 C17 A1IJB 34 A1IJB C18 C18 C 0 1 Y N N N N N -52.572 20.659 -2.517 6.530 2.659 0.182 C18 A1IJB 35 A1IJB N7 N7 N 0 1 Y N N N N N -52.994 19.568 -1.774 5.359 2.698 0.861 N7 A1IJB 36 A1IJB C19 C19 C 0 1 Y N N N N N -54.280 19.769 -1.623 4.731 1.569 0.707 C19 A1IJB 37 A1IJB N8 N8 N 0 1 Y N N N N N -53.585 22.625 -3.530 7.682 1.102 -1.161 N8 A1IJB 38 A1IJB C20 C20 C 0 1 Y N N N N N -52.336 22.885 -3.930 8.650 1.980 -1.319 C20 A1IJB 39 A1IJB N9 N9 N 0 1 Y N N N N N -51.210 22.178 -3.738 8.616 3.179 -0.766 N9 A1IJB 40 A1IJB C21 C21 C 0 1 Y N N N N N -51.296 21.044 -2.994 7.588 3.562 -0.016 C21 A1IJB 41 A1IJB N10 N10 N 0 1 N N N N N N -50.193 20.318 -2.802 7.561 4.821 0.559 N10 A1IJB 42 A1IJB H1 H1 H 0 1 N N N N N N -47.321 14.125 -0.089 -4.304 5.352 -1.644 H1 A1IJB 43 A1IJB H2 H2 H 0 1 N N N N N N -53.561 12.733 0.305 -6.750 -0.058 1.028 H2 A1IJB 44 A1IJB H3 H3 H 0 1 N N N N N N -48.270 10.137 -1.447 -8.163 5.924 0.716 H3 A1IJB 45 A1IJB H4 H4 H 0 1 N N N N N N -49.585 9.717 -0.574 -8.589 4.403 1.288 H4 A1IJB 46 A1IJB H5 H5 H 0 1 N N N N N N -51.380 15.659 1.430 -4.021 0.558 -1.544 H5 A1IJB 47 A1IJB H6 H6 H 0 1 N N N N N N -54.451 16.623 1.751 -3.317 -1.997 -1.548 H6 A1IJB 48 A1IJB H7 H7 H 0 1 N N N N N N -54.444 14.713 -0.637 -2.941 -1.721 1.441 H7 A1IJB 49 A1IJB H8 H8 H 0 1 N N N N N N -52.324 15.717 -1.159 -3.552 0.506 1.444 H8 A1IJB 50 A1IJB H9 H9 H 0 1 N N N N N N -51.562 17.553 0.047 -2.335 1.968 -0.000 H9 A1IJB 51 A1IJB H10 H10 H 0 1 N N N N N N -57.499 14.717 -1.529 -0.797 -4.218 0.148 H10 A1IJB 52 A1IJB H11 H11 H 0 1 N N N N N N -55.757 14.998 2.941 -3.289 -3.951 0.043 H11 A1IJB 53 A1IJB H12 H12 H 0 1 N N N N N N -56.592 15.479 1.425 -4.706 -3.258 0.868 H12 A1IJB 54 A1IJB H13 H13 H 0 1 N N N N N N -55.290 11.313 2.754 -4.710 -6.277 -0.442 H13 A1IJB 55 A1IJB H14 H14 H 0 1 N N N N N N -54.201 12.722 2.986 -6.127 -5.584 0.383 H14 A1IJB 56 A1IJB H15 H15 H 0 1 N N N N N N -55.829 12.711 3.745 -6.298 -6.281 -1.245 H15 A1IJB 57 A1IJB H16 H16 H 0 1 N N N N N N -58.739 17.934 -2.119 2.482 -2.061 1.683 H16 A1IJB 58 A1IJB H17 H17 H 0 1 N N N N N N -57.848 18.376 -0.623 2.229 -3.631 0.883 H17 A1IJB 59 A1IJB H18 H18 H 0 1 N N N N N N -58.838 20.301 -2.021 3.260 -2.670 -1.208 H18 A1IJB 60 A1IJB H19 H19 H 0 1 N N N N N N -56.570 19.445 -3.861 4.585 -3.344 1.305 H19 A1IJB 61 A1IJB H20 H20 H 0 1 N N N N N N -56.175 21.774 -4.340 5.725 -1.301 1.518 H20 A1IJB 62 A1IJB H21 H21 H 0 1 N N N N N N -56.068 22.466 -1.750 5.404 -0.829 -1.500 H21 A1IJB 63 A1IJB H22 H22 H 0 1 N N N N N N -58.759 19.019 -4.482 6.155 -4.205 -0.309 H22 A1IJB 64 A1IJB H23 H23 H 0 1 N N N N N N -57.543 23.375 -3.339 7.453 -2.725 0.598 H23 A1IJB 65 A1IJB H24 H24 H 0 1 N N N N N N -54.923 19.093 -1.079 3.769 1.330 1.137 H24 A1IJB 66 A1IJB H25 H25 H 0 1 N N N N N N -52.214 23.800 -4.491 9.504 1.710 -1.921 H25 A1IJB 67 A1IJB H26 H26 H 0 1 N N N N N N -49.422 20.752 -3.268 8.298 5.436 0.415 H26 A1IJB 68 A1IJB H27 H27 H 0 1 N N N N N N -50.000 20.258 -1.823 6.806 5.089 1.105 H27 A1IJB 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IJB O8 C14 SING N N 1 A1IJB C20 N9 DOUB Y N 2 A1IJB C20 N8 SING Y N 3 A1IJB N9 C21 SING Y N 4 A1IJB C14 C15 SING N N 5 A1IJB C14 C13 SING N N 6 A1IJB N8 C17 DOUB Y N 7 A1IJB C15 O9 SING N N 8 A1IJB C15 C16 SING N N 9 A1IJB O5 P1 DOUB N N 10 A1IJB C21 N10 SING N N 11 A1IJB C21 C18 DOUB Y N 12 A1IJB C17 C18 SING Y N 13 A1IJB C17 N6 SING Y N 14 A1IJB C18 N7 SING Y N 15 A1IJB O4 P1 SING N N 16 A1IJB O4 C12 SING N N 17 A1IJB N6 C16 SING N N 18 A1IJB N6 C19 SING Y N 19 A1IJB C16 O7 SING N N 20 A1IJB C13 C12 SING N N 21 A1IJB C13 O7 SING N N 22 A1IJB P1 O6 SING N N 23 A1IJB P1 O3 SING N N 24 A1IJB N7 C19 DOUB Y N 25 A1IJB N5 C4 SING N N 26 A1IJB C4 N2 DOUB Y N 27 A1IJB C4 C1 SING Y N 28 A1IJB O3 C8 SING N N 29 A1IJB N2 C3 SING Y N 30 A1IJB C1 N3 SING Y N 31 A1IJB C1 C2 DOUB Y N 32 A1IJB N3 C5 DOUB Y N 33 A1IJB C9 C8 SING N N 34 A1IJB C9 O2 SING N N 35 A1IJB C9 C6 SING N N 36 A1IJB C8 C7 SING N N 37 A1IJB C3 N1 DOUB Y N 38 A1IJB C2 N1 SING Y N 39 A1IJB C2 N4 SING Y N 40 A1IJB C5 N4 SING Y N 41 A1IJB N4 C6 SING N N 42 A1IJB C6 O1 SING N N 43 A1IJB C7 O1 SING N N 44 A1IJB C7 C10 SING N N 45 A1IJB S1 C10 SING N N 46 A1IJB S1 C11 SING N N 47 A1IJB C3 H1 SING N N 48 A1IJB C5 H2 SING N N 49 A1IJB N5 H3 SING N N 50 A1IJB N5 H4 SING N N 51 A1IJB C6 H5 SING N N 52 A1IJB C7 H6 SING N N 53 A1IJB C8 H7 SING N N 54 A1IJB C9 H8 SING N N 55 A1IJB O2 H9 SING N N 56 A1IJB O6 H10 SING N N 57 A1IJB C10 H11 SING N N 58 A1IJB C10 H12 SING N N 59 A1IJB C11 H13 SING N N 60 A1IJB C11 H14 SING N N 61 A1IJB C11 H15 SING N N 62 A1IJB C12 H16 SING N N 63 A1IJB C12 H17 SING N N 64 A1IJB C13 H18 SING N N 65 A1IJB C14 H19 SING N N 66 A1IJB C15 H20 SING N N 67 A1IJB C16 H21 SING N N 68 A1IJB O8 H22 SING N N 69 A1IJB O9 H23 SING N N 70 A1IJB C19 H24 SING N N 71 A1IJB C20 H25 SING N N 72 A1IJB N10 H26 SING N N 73 A1IJB N10 H27 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IJB InChI InChI 1.06 "InChI=1S/C21H27N10O9PS/c1-42-3-9-15(14(34)21(39-9)31-7-29-11-17(23)25-5-27-19(11)31)40-41(35,36)37-2-8-12(32)13(33)20(38-8)30-6-28-10-16(22)24-4-26-18(10)30/h4-9,12-15,20-21,32-34H,2-3H2,1H3,(H,35,36)(H2,22,24,26)(H2,23,25,27)/t8-,9-,12-,13-,14-,15-,20-,21-/m1/s1" A1IJB InChIKey InChI 1.06 NNWVUANIXUHJMY-NAGRZYTCSA-N A1IJB SMILES_CANONICAL CACTVS 3.385 "CSC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)n5cnc6c(N)ncnc56" A1IJB SMILES CACTVS 3.385 "CSC[CH]1O[CH]([CH](O)[CH]1O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)n5cnc6c(N)ncnc56" A1IJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O" A1IJB SMILES "OpenEye OEToolkits" 2.0.7 "CSCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O" # _pdbx_chem_comp_identifier.comp_id A1IJB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-2-(methylsulfanylmethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IJB "Create component" 2024-07-29 PDBE A1IJB "Initial release" 2025-07-02 RCSB #