data_A1IJF # _chem_comp.id A1IJF _chem_comp.name "2-[(4Z)-2-(aminomethyl)-4-[(3-azanyl-4-oxidanyl-phenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id "GLY, TY2, GLY" _chem_comp.pdbx_synonyms GLYCEROL _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-30 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.275 _chem_comp.one_letter_code GXG _chem_comp.three_letter_code A1IJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9G7Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IJF O2 O1 O 0 1 N N N N Y N -17.579 53.131 2.352 -2.129 2.475 0.535 O2 CRY 1 A1IJF O3 O2 O 0 1 N N N N Y Y -21.511 53.980 3.890 -3.920 0.110 -1.568 O3 CRY 2 A1IJF C1 C1 C 0 1 N N N N Y N -17.218 55.097 5.182 -1.531 -0.859 0.427 C1 CRY 3 A1IJF C2 C2 C 0 1 N N N N Y N -17.251 53.907 3.262 -1.699 1.338 0.462 C2 CRY 4 A1IJF C3 C3 C 0 1 N N N N Y Y -20.443 54.562 4.037 -4.555 0.049 -0.541 C3 CRY 5 A1IJF CA3 C4 C 0 1 N N N N Y N -19.318 53.741 4.621 -3.843 0.080 0.787 CA3 CRY 6 A1IJF N3 N1 N 0 1 N N N N Y N -18.001 54.262 4.358 -2.399 0.188 0.565 N3 CRY 7 A1IJF CA1 C5 C 0 1 N N N N Y N -17.679 55.613 6.501 -1.934 -2.310 0.484 CA1 CRY 8 A1IJF N1 N2 N 0 1 N N N Y Y N -17.728 54.576 7.480 -0.748 -3.155 0.290 N1 CRY 9 A1IJF CA2 C6 C 0 1 N N N N Y N -15.997 54.669 3.431 -0.303 0.924 0.241 CA2 CRY 10 A1IJF N2 N3 N 0 1 N N N N Y N -16.048 55.429 4.602 -0.319 -0.444 0.236 N2 CRY 11 A1IJF CB2 C7 C 0 1 N N N N N N -14.965 54.485 2.583 0.792 1.743 0.073 CB2 CRY 12 A1IJF CG2 C8 C 0 1 Y N N N N N -13.546 54.815 2.672 2.134 1.163 -0.024 CG2 CRY 13 A1IJF CD2 C9 C 0 1 Y N N N N N -12.676 54.199 1.777 3.259 1.997 -0.062 CD2 CRY 14 A1IJF CE2 C10 C 0 1 Y N N N N N -11.324 54.444 1.808 4.519 1.449 -0.153 CE2 CRY 15 A1IJF CZ C11 C 0 1 Y N N N N N -10.826 55.412 2.660 4.680 0.071 -0.207 CZ CRY 16 A1IJF OH O3 O 0 1 N N N N N N -9.497 55.744 2.709 5.925 -0.463 -0.297 OH CRY 17 A1IJF CE1 C12 C 0 1 Y N N N N N -11.713 56.088 3.507 3.564 -0.769 -0.170 CE1 CRY 18 A1IJF NE1 N4 N 0 1 N N N N N N -11.210 57.083 4.310 3.730 -2.158 -0.224 NE1 CRY 19 A1IJF CD1 C13 C 0 1 Y N N N N N -13.056 55.799 3.512 2.296 -0.229 -0.074 CD1 CRY 20 A1IJF OXT O4 O 0 1 N Y N N Y Y -20.314 55.599 3.765 -5.893 -0.047 -0.584 OXT CRY 21 A1IJF HA31 H2 H 0 0 N N N N Y N -19.457 53.693 5.711 -4.187 0.939 1.363 HA31 CRY 22 A1IJF HA32 H3 H 0 0 N N N N Y N -19.377 52.727 4.199 -4.059 -0.836 1.336 HA32 CRY 23 A1IJF HA11 H4 H 0 0 N N N N Y N -16.984 56.394 6.842 -2.380 -2.526 1.455 HA1 CRY 24 A1IJF H H6 H 0 1 N N N Y Y N -18.040 54.954 8.351 -0.034 -2.937 0.969 H CRY 25 A1IJF H2 H7 H 0 1 N Y N Y Y N -18.362 53.864 7.179 -0.992 -4.134 0.324 H2 CRY 26 A1IJF HB2 H9 H 0 1 N N N N N N -15.242 53.999 1.659 0.661 2.814 0.013 HB2 CRY 27 A1IJF HD2 H10 H 0 1 N N N N N N -13.072 53.514 1.042 3.139 3.069 -0.021 HD2 CRY 28 A1IJF HE2 H11 H 0 1 N N N N N N -10.655 53.884 1.171 5.386 2.093 -0.183 HE2 CRY 29 A1IJF HOH H12 H 0 1 N N N N N N -9.364 56.427 3.356 6.337 -0.646 0.558 HOH CRY 30 A1IJF HNE1 H13 H 0 0 N N N N N N -11.949 57.476 4.857 4.621 -2.537 -0.288 HNE1 CRY 31 A1IJF HNE2 H14 H 0 0 N N N N N N -10.513 56.701 4.917 2.956 -2.741 -0.198 HNE2 CRY 32 A1IJF HD1 H15 H 0 1 N N N N N N -13.725 56.337 4.168 1.432 -0.877 -0.041 HD1 CRY 33 A1IJF HXT H1 H 0 1 N Y N N Y Y -21.130 55.940 3.417 -6.304 -0.064 -1.459 HXT CRY 34 A1IJF HA12 H16 H 0 0 N N N N N N -18.685 56.043 6.385 -2.659 -2.517 -0.303 H1 A1IJF 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IJF C3 O3 DOUB N N 1 A1IJF C3 CA3 SING N N 2 A1IJF CA3 N3 SING N N 3 A1IJF N3 C2 SING N N 4 A1IJF N3 C1 SING N N 5 A1IJF C1 CA1 SING N N 6 A1IJF CA1 N1 SING N N 7 A1IJF C2 O2 DOUB N N 8 A1IJF C2 CA2 SING N N 9 A1IJF CA2 CB2 DOUB N Z 10 A1IJF C1 N2 DOUB N N 11 A1IJF CA2 N2 SING N N 12 A1IJF CB2 CG2 SING N N 13 A1IJF CG2 CD1 SING Y N 14 A1IJF CG2 CD2 DOUB Y N 15 A1IJF CD2 CE2 SING Y N 16 A1IJF CE2 CZ DOUB Y N 17 A1IJF CZ CE1 SING Y N 18 A1IJF CZ OH SING N N 19 A1IJF CE1 CD1 DOUB Y N 20 A1IJF CE1 NE1 SING N N 21 A1IJF C3 OXT SING N N 22 A1IJF CA3 HA31 SING N N 23 A1IJF CA3 HA32 SING N N 24 A1IJF CA1 HA11 SING N N 25 A1IJF N1 H SING N N 26 A1IJF N1 H2 SING N N 27 A1IJF CB2 HB2 SING N N 28 A1IJF CD2 HD2 SING N N 29 A1IJF CE2 HE2 SING N N 30 A1IJF OH HOH SING N N 31 A1IJF NE1 HNE1 SING N N 32 A1IJF NE1 HNE2 SING N N 33 A1IJF CD1 HD1 SING N N 34 A1IJF OXT HXT SING N N 35 A1IJF CA1 HA12 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IJF InChI InChI 1.06 "InChI=1S/C13H14N4O4/c14-5-11-16-9(13(21)17(11)6-12(19)20)4-7-1-2-10(18)8(15)3-7/h1-4,18H,5-6,14-15H2,(H,19,20)/b9-4-" A1IJF InChIKey InChI 1.06 PJDPWFYOLRZAMD-WTKPLQERSA-N A1IJF SMILES_CANONICAL CACTVS 3.385 "NCC1=NC(=C\c2ccc(O)c(N)c2)/C(=O)N1CC(O)=O" A1IJF SMILES CACTVS 3.385 "NCC1=NC(=Cc2ccc(O)c(N)c2)C(=O)N1CC(O)=O" A1IJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1/C=C\2/C(=O)N(C(=N2)CN)CC(=O)O)N)O" A1IJF SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C=C2C(=O)N(C(=N2)CN)CC(=O)O)N)O" # _pdbx_chem_comp_identifier.comp_id A1IJF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(4~{Z})-2-(aminomethyl)-4-[(3-azanyl-4-oxidanyl-phenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IJF "Create component" 2024-07-30 PDBE A1IJF "Modify PCM" 2024-09-27 PDBE A1IJF "Initial release" 2025-05-21 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IJF _pdbx_chem_comp_pcm.modified_residue_id "GLY, TYR, GLY" _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Chromophore/chromophore-like _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #