data_A1IJK # _chem_comp.id A1IJK _chem_comp.name "2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-01 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IJK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GAN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IJK C1 C1 C 0 1 N N N N N N 221.107 206.313 213.911 -11.846 0.365 -0.739 C1 A1IJK 1 A1IJK C2 C2 C 0 1 N N R N N N 221.260 207.801 213.716 -10.551 0.204 0.060 C2 A1IJK 2 A1IJK C3 C3 C 0 1 N N N N N N 222.157 208.424 214.762 -9.358 0.200 -0.898 C3 A1IJK 3 A1IJK C6 C4 C 0 1 N N N N N N 222.692 210.455 215.855 -6.962 0.162 -0.950 C6 A1IJK 4 A1IJK C7 C5 C 0 1 N N N N N N 224.179 210.163 215.867 -5.729 0.126 -0.044 C7 A1IJK 5 A1IJK O4 O1 O 0 1 N N N N N N 222.070 209.844 214.729 -8.143 0.168 -0.146 O4 A1IJK 6 A1IJK O5 O2 O 0 1 N N N N N N 219.970 208.409 213.765 -10.586 -1.029 0.781 O5 A1IJK 7 A1IJK C8 C6 C 0 1 N N N N N N 224.994 211.068 214.960 -4.464 0.119 -0.905 C8 A1IJK 8 A1IJK C10 C7 C 0 1 N N N N N N 227.294 211.232 215.770 -2.049 0.074 -0.580 C10 A1IJK 9 A1IJK N9 N1 N 0 1 N N N N N N 226.400 210.686 214.944 -3.283 0.085 -0.038 N9 A1IJK 10 A1IJK C33 C8 C 0 1 N N N N N N 230.041 208.064 220.496 3.594 -3.663 -0.427 C33 A1IJK 11 A1IJK C34 C9 C 0 1 N N N N N N 230.339 208.715 219.336 2.967 -2.507 -0.124 C34 A1IJK 12 A1IJK C11 C10 C 0 1 Y N N N N N 228.682 210.657 215.746 -0.857 0.039 0.296 C11 A1IJK 13 A1IJK C12 C11 C 0 1 Y N N N N N 229.128 209.973 214.625 -1.012 0.012 1.684 C12 A1IJK 14 A1IJK C13 C12 C 0 1 Y N N N N N 230.399 209.436 214.596 0.094 -0.021 2.508 C13 A1IJK 15 A1IJK C14 C13 C 0 1 Y N N N N N 231.255 209.540 215.687 1.375 -0.027 1.960 C14 A1IJK 16 A1IJK C15 C14 C 0 1 Y N N N N N 230.805 210.218 216.839 1.539 -0.000 0.561 C15 A1IJK 17 A1IJK C16 C15 C 0 1 Y N N N N N 229.524 210.765 216.849 0.418 0.027 -0.265 C16 A1IJK 18 A1IJK C17 C16 C 0 1 N N N N N N 232.623 208.909 215.560 2.559 -0.061 2.844 C17 A1IJK 19 A1IJK C20 C17 C 0 1 Y N N N N N 231.661 210.387 218.055 2.894 -0.006 -0.027 C20 A1IJK 20 A1IJK C21 C18 C 0 1 Y N N N N N 232.857 211.228 218.061 3.610 1.185 -0.306 C21 A1IJK 21 A1IJK C22 C19 C 0 1 Y N N N N N 233.598 211.371 219.263 4.889 1.062 -0.864 C22 A1IJK 22 A1IJK C24 C20 C 0 1 Y N N N N N 232.122 209.919 220.449 4.860 -1.091 -0.909 C24 A1IJK 23 A1IJK C25 C21 C 0 1 Y N N N N N 231.356 209.669 219.289 3.579 -1.203 -0.356 C25 A1IJK 24 A1IJK C27 C22 C 0 1 N N N N N N 234.748 212.142 219.283 5.654 2.333 -1.163 C27 A1IJK 25 A1IJK C28 C23 C 0 1 N N N N N N 235.203 212.811 218.087 4.984 3.649 -0.837 C28 A1IJK 26 A1IJK C29 C24 C 0 1 N N N N N N 234.427 212.656 216.897 3.692 3.644 -0.276 C29 A1IJK 27 A1IJK C30 C25 C 0 1 N N N N N N 233.275 211.885 216.902 3.033 2.494 -0.021 C30 A1IJK 28 A1IJK C31 C26 C 0 1 N N N N N N 231.762 209.304 221.643 5.589 -2.369 -1.265 C31 A1IJK 29 A1IJK C32 C27 C 0 1 N N N N N N 230.694 208.359 221.676 4.886 -3.679 -0.988 C32 A1IJK 30 A1IJK O18 O3 O 0 1 N N N N N N 233.294 208.727 216.590 2.401 -0.086 4.181 O18 A1IJK 31 A1IJK O19 O4 O 0 1 N N N N N N 233.004 208.600 214.417 3.675 -0.067 2.365 O19 A1IJK 32 A1IJK O23 O5 O 0 1 Y N N N N N 233.210 210.755 220.427 5.378 -0.017 -1.105 O23 A1IJK 33 A1IJK O26 O6 O 0 1 N N N N N N 227.008 212.163 216.520 -1.916 0.092 -1.787 O26 A1IJK 34 A1IJK O35 O7 O 0 1 N N N N N N 236.231 213.498 218.093 5.554 4.699 -1.056 O35 A1IJK 35 A1IJK O36 O8 O 0 1 N N N N N N 230.366 207.810 222.735 5.430 -4.734 -1.246 O36 A1IJK 36 A1IJK H1 H1 H 0 1 N N N N N N 222.097 205.834 213.875 -12.696 0.367 -0.057 H1 A1IJK 37 A1IJK H2 H2 H 0 1 N N N N N N 220.641 206.117 214.888 -11.819 1.305 -1.289 H2 A1IJK 38 A1IJK H3 H3 H 0 1 N N N N N N 220.472 205.902 213.113 -11.945 -0.464 -1.440 H3 A1IJK 39 A1IJK H4 H4 H 0 1 N N N N N N 221.709 207.976 212.727 -10.451 1.033 0.761 H4 A1IJK 40 A1IJK H5 H5 H 0 1 N N N N N N 221.851 208.068 215.757 -9.411 -0.678 -1.541 H5 A1IJK 41 A1IJK H6 H6 H 0 1 N N N N N N 223.197 208.123 214.569 -9.381 1.102 -1.511 H6 A1IJK 42 A1IJK H7 H7 H 0 1 N N N N N N 222.538 211.543 215.807 -6.935 1.062 -1.564 H7 A1IJK 43 A1IJK H8 H8 H 0 1 N N N N N N 222.239 210.061 216.776 -6.965 -0.718 -1.594 H8 A1IJK 44 A1IJK H9 H9 H 0 1 N N N N N N 224.330 209.123 215.543 -5.725 1.005 0.600 H9 A1IJK 45 A1IJK H10 H10 H 0 1 N N N N N N 224.547 210.284 216.897 -5.755 -0.775 0.570 H10 A1IJK 46 A1IJK H11 H11 H 0 1 N N N N N N 220.057 209.347 213.643 -10.674 -1.811 0.219 H11 A1IJK 47 A1IJK H12 H12 H 0 1 N N N N N N 224.910 212.104 215.320 -4.467 -0.760 -1.549 H12 A1IJK 48 A1IJK H13 H13 H 0 1 N N N N N N 224.594 211.002 213.937 -4.438 1.020 -1.519 H13 A1IJK 49 A1IJK H14 H14 H 0 1 N N N N N N 226.705 209.992 214.292 -3.390 0.070 0.926 H14 A1IJK 50 A1IJK H15 H15 H 0 1 N N N N N N 229.277 207.301 220.492 3.095 -4.600 -0.230 H15 A1IJK 51 A1IJK H16 H16 H 0 1 N N N N N N 229.780 208.489 218.440 1.976 -2.549 0.304 H16 A1IJK 52 A1IJK H17 H17 H 0 1 N N N N N N 228.477 209.860 213.770 -2.002 0.017 2.115 H17 A1IJK 53 A1IJK H18 H18 H 0 1 N N N N N N 230.736 208.924 213.707 -0.033 -0.041 3.580 H18 A1IJK 54 A1IJK H19 H19 H 0 1 N N N N N N 229.177 211.283 217.731 0.537 0.044 -1.338 H19 A1IJK 55 A1IJK H20 H20 H 0 1 N N N N N N 235.566 211.480 219.604 6.595 2.293 -0.613 H20 A1IJK 56 A1IJK H21 H21 H 0 1 N N N N N N 234.590 212.924 220.041 5.894 2.336 -2.226 H21 A1IJK 57 A1IJK H22 H22 H 0 1 N N N N N N 234.741 213.144 215.986 3.216 4.585 -0.044 H22 A1IJK 58 A1IJK H23 H23 H 0 1 N N N N N N 232.693 211.791 215.997 2.044 2.545 0.409 H23 A1IJK 59 A1IJK H24 H24 H 0 1 N N N N N N 232.657 208.781 222.011 5.830 -2.330 -2.328 H24 A1IJK 60 A1IJK H25 H25 H 0 1 N N N N N N 231.493 210.108 222.344 6.530 -2.380 -0.715 H25 A1IJK 61 A1IJK H26 H26 H 0 1 N N N N N N 234.123 208.323 216.361 3.205 -0.108 4.719 H26 A1IJK 62 A1IJK H27 H27 H 0 1 N N N N N N 233.700 210.909 221.226 6.265 -0.021 -1.489 H27 A1IJK 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IJK C2 O5 SING N N 1 A1IJK C2 C1 SING N N 2 A1IJK C2 C3 SING N N 3 A1IJK O19 C17 DOUB N N 4 A1IJK C13 C12 DOUB Y N 5 A1IJK C13 C14 SING Y N 6 A1IJK C12 C11 SING Y N 7 A1IJK O4 C3 SING N N 8 A1IJK O4 C6 SING N N 9 A1IJK N9 C8 SING N N 10 A1IJK N9 C10 SING N N 11 A1IJK C8 C7 SING N N 12 A1IJK C17 C14 SING N N 13 A1IJK C17 O18 SING N N 14 A1IJK C14 C15 DOUB Y N 15 A1IJK C11 C10 SING N N 16 A1IJK C11 C16 DOUB Y N 17 A1IJK C10 O26 DOUB N N 18 A1IJK C6 C7 SING N N 19 A1IJK C15 C16 SING Y N 20 A1IJK C15 C20 SING N N 21 A1IJK C29 C30 DOUB N N 22 A1IJK C29 C28 SING N N 23 A1IJK C30 C21 SING N N 24 A1IJK C20 C21 DOUB Y N 25 A1IJK C20 C25 SING Y N 26 A1IJK C21 C22 SING Y N 27 A1IJK C28 O35 DOUB N N 28 A1IJK C28 C27 SING N N 29 A1IJK C22 C27 SING N N 30 A1IJK C22 O23 DOUB Y N 31 A1IJK C25 C34 SING N N 32 A1IJK C25 C24 DOUB Y N 33 A1IJK C34 C33 DOUB N N 34 A1IJK O23 C24 SING Y N 35 A1IJK C24 C31 SING N N 36 A1IJK C33 C32 SING N N 37 A1IJK C31 C32 SING N N 38 A1IJK C32 O36 DOUB N N 39 A1IJK C1 H1 SING N N 40 A1IJK C1 H2 SING N N 41 A1IJK C1 H3 SING N N 42 A1IJK C2 H4 SING N N 43 A1IJK C3 H5 SING N N 44 A1IJK C3 H6 SING N N 45 A1IJK C6 H7 SING N N 46 A1IJK C6 H8 SING N N 47 A1IJK C7 H9 SING N N 48 A1IJK C7 H10 SING N N 49 A1IJK O5 H11 SING N N 50 A1IJK C8 H12 SING N N 51 A1IJK C8 H13 SING N N 52 A1IJK N9 H14 SING N N 53 A1IJK C33 H15 SING N N 54 A1IJK C34 H16 SING N N 55 A1IJK C12 H17 SING N N 56 A1IJK C13 H18 SING N N 57 A1IJK C16 H19 SING N N 58 A1IJK C27 H20 SING N N 59 A1IJK C27 H21 SING N N 60 A1IJK C29 H22 SING N N 61 A1IJK C30 H23 SING N N 62 A1IJK C31 H24 SING N N 63 A1IJK C31 H25 SING N N 64 A1IJK O18 H26 SING N N 65 A1IJK O23 H27 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IJK InChI InChI 1.06 "InChI=1S/C27H27NO8/c1-15(29)14-35-10-2-9-28-26(32)16-3-6-19(27(33)34)22(11-16)25-20-7-4-17(30)12-23(20)36-24-13-18(31)5-8-21(24)25/h3-8,11,15,29,36H,2,9-10,12-14H2,1H3,(H,28,32)(H,33,34)/t15-/m1/s1" A1IJK InChIKey InChI 1.06 GVYCNBHUBWDBFF-OAHLLOKOSA-N A1IJK SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)COCCCNC(=O)c1ccc(C(O)=O)c(c1)c2c3C=CC(=O)Cc3[oH]c4CC(=O)C=Cc24" A1IJK SMILES CACTVS 3.385 "C[CH](O)COCCCNC(=O)c1ccc(C(O)=O)c(c1)c2c3C=CC(=O)Cc3[oH]c4CC(=O)C=Cc24" A1IJK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](COCCCNC(=O)c1ccc(c(c1)C2=C3C=CC(=O)CC3=[OH]C4=C2C=CC(=O)C4)C(=O)O)O" A1IJK SMILES "OpenEye OEToolkits" 2.0.7 "CC(COCCCNC(=O)c1ccc(c(c1)C2=C3C=CC(=O)CC3=[OH]C4=C2C=CC(=O)C4)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id A1IJK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2~{R})-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IJK "Create component" 2024-08-01 PDBE A1IJK "Initial release" 2025-01-15 RCSB #