data_A1IJO # _chem_comp.id A1IJO _chem_comp.name "1-(4-methoxyphenyl)-3-[[2-methyl-3-(trifluoromethyl)phenyl]methyl]-2,4-bis(oxidanylidene)pyrimidine-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H17 F3 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-01 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IJO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GC1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IJO C4 C1 C 0 1 Y N N N N N -22.883 25.269 -8.749 3.366 0.385 -0.560 C4 A1IJO 1 A1IJO C5 C2 C 0 1 Y N N N N N -24.012 25.701 -9.414 2.112 -0.123 -0.277 C5 A1IJO 2 A1IJO C6 C3 C 0 1 Y N N N N N -25.305 25.375 -8.943 1.654 -0.146 1.027 C6 A1IJO 3 A1IJO C7 C4 C 0 1 N N N N N N -23.954 26.532 -10.655 1.244 -0.652 -1.389 C7 A1IJO 4 A1IJO C10 C5 C 0 1 N N N N N N -26.518 26.448 -13.359 -1.505 -2.764 0.124 C10 A1IJO 5 A1IJO N12 N1 N 0 1 N N N N N N -25.147 24.521 -13.653 -2.259 -0.554 -0.259 N12 A1IJO 6 A1IJO C13 C6 C 0 1 Y N N N N N -24.934 23.346 -14.357 -3.276 0.409 -0.196 C13 A1IJO 7 A1IJO C15 C7 C 0 1 Y N N N N N -23.709 21.911 -15.841 -5.394 1.243 -0.951 C15 A1IJO 8 A1IJO C17 C8 C 0 1 Y N N N N N -25.778 21.134 -14.806 -4.173 2.421 0.752 C17 A1IJO 9 A1IJO C20 C9 C 0 1 N N N N N N -23.169 19.464 -16.583 -6.093 4.315 0.920 C20 A1IJO 10 A1IJO C21 C10 C 0 1 N N N N N N -24.404 24.873 -12.521 -1.061 -0.211 -0.758 C21 A1IJO 11 A1IJO C28 C11 C 0 1 N N N N N N -21.817 24.009 -6.892 5.524 1.435 0.150 C28 A1IJO 12 A1IJO C27 C12 C 0 1 N N N N N N -21.468 25.573 -9.242 3.865 0.410 -1.982 C27 A1IJO 13 A1IJO C3 C13 C 0 1 Y N N N N N -23.060 24.507 -7.585 4.160 0.875 0.460 C3 A1IJO 14 A1IJO F31 F1 F 0 1 N N N N N N -21.216 23.303 -7.863 6.132 1.866 1.334 F31 A1IJO 15 A1IJO F29 F2 F 0 1 N N N N N N -22.155 23.259 -5.837 6.312 0.442 -0.444 F29 A1IJO 16 A1IJO F30 F3 F 0 1 N N N N N N -20.988 25.005 -6.492 5.397 2.516 -0.729 F30 A1IJO 17 A1IJO C2 C14 C 0 1 Y N N N N N -24.339 24.196 -7.114 3.702 0.853 1.764 C2 A1IJO 18 A1IJO C1 C15 C 0 1 Y N N N N N -25.488 24.635 -7.782 2.451 0.339 2.048 C1 A1IJO 19 A1IJO N8 N2 N 0 1 N N N N N N -24.725 26.035 -11.814 -0.044 -1.084 -0.841 N8 A1IJO 20 A1IJO O22 O1 O 0 1 N N N N N N -23.490 24.205 -12.103 -0.890 0.929 -1.143 O22 A1IJO 21 A1IJO C9 C16 C 0 1 N N N N N N -25.787 26.822 -12.245 -0.200 -2.358 -0.422 C9 A1IJO 22 A1IJO O26 O2 O 0 1 N N N N N N -26.009 27.852 -11.593 0.718 -3.154 -0.495 O26 A1IJO 23 A1IJO C23 C17 C 0 1 N N N N N N -27.668 27.322 -13.944 -1.734 -4.136 0.595 C23 A1IJO 24 A1IJO O24 O3 O 0 1 N N N N N N -28.317 26.780 -14.872 -2.817 -4.451 1.048 O24 A1IJO 25 A1IJO O25 O4 O 0 1 N N N N N N -27.741 28.561 -13.597 -0.742 -5.047 0.526 O25 A1IJO 26 A1IJO C11 C18 C 0 1 N N N N N N -26.199 25.300 -14.054 -2.508 -1.814 0.186 C11 A1IJO 27 A1IJO C14 C19 C 0 1 Y N N N N N -23.825 23.135 -15.184 -4.392 0.295 -1.014 C14 A1IJO 28 A1IJO C16 C20 C 0 1 Y N N N N N -24.680 20.914 -15.640 -5.285 2.310 -0.070 C16 A1IJO 29 A1IJO O19 O5 O 0 1 N N N N N N -24.568 19.705 -16.252 -6.271 3.244 -0.009 O19 A1IJO 30 A1IJO C18 C21 C 0 1 Y N N N N N -25.893 22.358 -14.166 -3.171 1.473 0.690 C18 A1IJO 31 A1IJO H1 H1 H 0 1 N N N N N N -26.169 25.709 -9.498 0.674 -0.543 1.249 H1 A1IJO 32 A1IJO H2 H2 H 0 1 N N N N N N -24.333 27.534 -10.405 1.079 0.134 -2.126 H2 A1IJO 33 A1IJO H3 H3 H 0 1 N N N N N N -22.900 26.605 -10.960 1.739 -1.498 -1.865 H3 A1IJO 34 A1IJO H4 H4 H 0 1 N N N N N N -22.875 21.729 -16.503 -6.262 1.155 -1.587 H4 A1IJO 35 A1IJO H5 H5 H 0 1 N N N N N N -26.523 20.365 -14.662 -4.091 3.249 1.441 H5 A1IJO 36 A1IJO H6 H6 H 0 1 N N N N N N -23.072 18.487 -17.079 -6.950 4.987 0.868 H6 A1IJO 37 A1IJO H7 H7 H 0 1 N N N N N N -22.811 20.255 -17.258 -6.010 3.911 1.929 H7 A1IJO 38 A1IJO H8 H8 H 0 1 N N N N N N -22.568 19.469 -15.662 -5.185 4.864 0.672 H8 A1IJO 39 A1IJO H9 H9 H 0 1 N N N N N N -21.138 24.776 -9.924 4.463 -0.481 -2.173 H9 A1IJO 40 A1IJO H10 H10 H 0 1 N N N N N N -21.464 26.536 -9.774 3.016 0.430 -2.665 H10 A1IJO 41 A1IJO H11 H11 H 0 1 N N N N N N -20.784 25.627 -8.382 4.478 1.298 -2.136 H11 A1IJO 42 A1IJO H12 H12 H 0 1 N N N N N N -24.443 23.605 -6.216 4.322 1.236 2.561 H12 A1IJO 43 A1IJO H13 H13 H 0 1 N N N N N N -26.476 24.408 -7.410 2.093 0.322 3.067 H13 A1IJO 44 A1IJO H14 H14 H 0 1 N N N N N N -28.366 29.010 -14.154 -0.940 -5.937 0.848 H14 A1IJO 45 A1IJO H15 H15 H 0 1 N N N N N N -26.781 25.015 -14.918 -3.479 -2.070 0.584 H15 A1IJO 46 A1IJO H16 H16 H 0 1 N N N N N N -23.076 23.903 -15.310 -4.477 -0.535 -1.700 H16 A1IJO 47 A1IJO H17 H17 H 0 1 N N N N N N -26.734 22.545 -13.514 -2.306 1.559 1.330 H17 A1IJO 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IJO C4 C27 SING N N 1 A1IJO C4 C3 DOUB Y N 2 A1IJO C4 C5 SING Y N 3 A1IJO C3 C28 SING N N 4 A1IJO C3 C2 SING Y N 5 A1IJO C28 F31 SING N N 6 A1IJO C28 F29 SING N N 7 A1IJO C28 F30 SING N N 8 A1IJO C2 C1 DOUB Y N 9 A1IJO C1 C6 SING Y N 10 A1IJO C5 C6 DOUB Y N 11 A1IJO C5 C7 SING N N 12 A1IJO N8 C7 SING N N 13 A1IJO N8 C21 SING N N 14 A1IJO N8 C9 SING N N 15 A1IJO C21 O22 DOUB N N 16 A1IJO C21 N12 SING N N 17 A1IJO C9 O26 DOUB N N 18 A1IJO C9 C10 SING N N 19 A1IJO C10 C23 SING N N 20 A1IJO C10 C11 DOUB N N 21 A1IJO C23 O24 DOUB N N 22 A1IJO C23 O25 SING N N 23 A1IJO N12 C11 SING N N 24 A1IJO N12 C13 SING N N 25 A1IJO C13 C14 DOUB Y N 26 A1IJO C13 C18 SING Y N 27 A1IJO C14 C15 SING Y N 28 A1IJO C16 C15 DOUB Y N 29 A1IJO C16 O19 SING N N 30 A1IJO C16 C17 SING Y N 31 A1IJO O19 C20 SING N N 32 A1IJO C17 C18 DOUB Y N 33 A1IJO C6 H1 SING N N 34 A1IJO C7 H2 SING N N 35 A1IJO C7 H3 SING N N 36 A1IJO C15 H4 SING N N 37 A1IJO C17 H5 SING N N 38 A1IJO C20 H6 SING N N 39 A1IJO C20 H7 SING N N 40 A1IJO C20 H8 SING N N 41 A1IJO C27 H9 SING N N 42 A1IJO C27 H10 SING N N 43 A1IJO C27 H11 SING N N 44 A1IJO C2 H12 SING N N 45 A1IJO C1 H13 SING N N 46 A1IJO O25 H14 SING N N 47 A1IJO C11 H15 SING N N 48 A1IJO C14 H16 SING N N 49 A1IJO C18 H17 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IJO InChI InChI 1.06 "InChI=1S/C21H17F3N2O5/c1-12-13(4-3-5-17(12)21(22,23)24)10-26-18(27)16(19(28)29)11-25(20(26)30)14-6-8-15(31-2)9-7-14/h3-9,11H,10H2,1-2H3,(H,28,29)" A1IJO InChIKey InChI 1.06 WMYXGENPWOLFCF-UHFFFAOYSA-N A1IJO SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)N2C=C(C(O)=O)C(=O)N(Cc3cccc(c3C)C(F)(F)F)C2=O" A1IJO SMILES CACTVS 3.385 "COc1ccc(cc1)N2C=C(C(O)=O)C(=O)N(Cc3cccc(c3C)C(F)(F)F)C2=O" A1IJO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1C(F)(F)F)CN2C(=O)C(=CN(C2=O)c3ccc(cc3)OC)C(=O)O" A1IJO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1C(F)(F)F)CN2C(=O)C(=CN(C2=O)c3ccc(cc3)OC)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IJO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(4-methoxyphenyl)-3-[[2-methyl-3-(trifluoromethyl)phenyl]methyl]-2,4-bis(oxidanylidene)pyrimidine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IJO "Create component" 2024-08-01 PDBE A1IJO "Initial release" 2024-11-27 RCSB #