data_A1IKB # _chem_comp.id A1IKB _chem_comp.name "5-[[8-(oxidanylamino)-8-oxidanylidene-octyl]amino]benzo[c][2,6]naphthyridine-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-[[8-(hydroxyamino)-8-oxooctyl]amino]benzo[c][2,6]naphthyridine-8-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-06 _chem_comp.pdbx_modified_date 2025-07-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 396.440 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IKB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GCW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IKB C02 C1 C 0 1 N N N N N N 13.131 -2.244 18.800 -9.097 0.477 0.003 C02 A1IKB 1 A1IKB C03 C2 C 0 1 N N N N N N 14.573 -2.360 19.313 -7.720 1.087 0.000 C03 A1IKB 2 A1IKB C04 C3 C 0 1 N N N N N N 15.247 -0.999 19.541 -6.669 -0.025 0.002 C04 A1IKB 3 A1IKB C05 C4 C 0 1 N N N N N N 16.748 -0.986 19.190 -5.270 0.594 -0.000 C05 A1IKB 4 A1IKB C06 C5 C 0 1 N N N N N N 17.398 0.393 19.422 -4.220 -0.518 0.002 C06 A1IKB 5 A1IKB C07 C6 C 0 1 N N N N N N 18.518 0.726 18.416 -2.821 0.101 -0.001 C07 A1IKB 6 A1IKB C08 C7 C 0 1 N N N N N N 18.958 2.205 18.487 -1.770 -1.011 0.001 C08 A1IKB 7 A1IKB C09 C8 C 0 1 N N N N N N 19.528 2.754 17.160 -0.371 -0.392 -0.002 C09 A1IKB 8 A1IKB C11 C9 C 0 1 Y N N N N N 18.374 3.931 15.242 1.979 -1.138 -0.002 C11 A1IKB 9 A1IKB C13 C10 C 0 1 Y N N N N N 18.774 3.176 13.061 3.634 0.515 -0.001 C13 A1IKB 10 A1IKB C14 C11 C 0 1 Y N N N N N 19.474 2.313 12.197 3.948 1.880 0.001 C14 A1IKB 11 A1IKB C15 C12 C 0 1 Y N N N N N 19.226 2.377 10.833 5.276 2.283 -0.000 C15 A1IKB 12 A1IKB C16 C13 C 0 1 N N N N N N 19.952 1.434 9.888 5.607 3.722 0.003 C16 A1IKB 13 A1IKB C19 C14 C 0 1 Y N N N N N 18.286 3.278 10.319 6.307 1.331 -0.004 C19 A1IKB 14 A1IKB C20 C15 C 0 1 Y N N N N N 17.590 4.122 11.179 6.016 -0.000 -0.007 C20 A1IKB 15 A1IKB C21 C16 C 0 1 Y N N N N N 17.849 4.069 12.563 4.687 -0.429 -0.005 C21 A1IKB 16 A1IKB C22 C17 C 0 1 Y N N N N N 17.141 4.940 13.461 4.348 -1.855 -0.002 C22 A1IKB 17 A1IKB C23 C18 C 0 1 Y N N N N N 16.188 5.862 12.985 5.305 -2.868 -0.004 C23 A1IKB 18 A1IKB C25 C19 C 0 1 Y N N N N N 15.789 6.603 15.148 3.649 -4.486 0.007 C25 A1IKB 19 A1IKB C26 C20 C 0 1 Y N N N N N 16.716 5.716 15.684 2.641 -3.562 0.005 C26 A1IKB 20 A1IKB C27 C21 C 0 1 Y N N N N N 17.414 4.864 14.812 2.978 -2.206 0.000 C27 A1IKB 21 A1IKB N10 N1 N 0 1 N N N N N N 18.668 3.833 16.673 0.635 -1.457 0.000 N10 A1IKB 22 A1IKB N12 N2 N 0 1 Y N N N N N 19.012 3.133 14.390 2.348 0.120 0.000 N12 A1IKB 23 A1IKB N24 N3 N 0 1 Y N N N N N 15.557 6.654 13.843 4.923 -4.128 -0.001 N24 A1IKB 24 A1IKB N28 N4 N 0 1 N N N N N N 12.431 -0.966 18.806 -10.186 1.271 -0.004 N28 A1IKB 25 A1IKB O01 O1 O 0 1 N N N N N N 12.572 -3.205 18.391 -9.227 -0.729 0.006 O01 A1IKB 26 A1IKB O17 O2 O 0 1 N N N N N N 20.975 0.801 10.258 4.718 4.550 0.007 O17 A1IKB 27 A1IKB O18 O3 O 0 1 N N N N N N 19.471 1.271 8.735 6.895 4.117 0.001 O18 A1IKB 28 A1IKB O29 O4 O 0 1 N N N N N N 11.106 -0.883 18.332 -11.481 0.698 -0.007 O29 A1IKB 29 A1IKB H032 H1 H 0 0 N N N N N N 15.163 -2.922 18.574 -7.596 1.702 -0.891 H032 A1IKB 30 A1IKB H031 H2 H 0 0 N N N N N N 14.561 -2.908 20.267 -7.595 1.706 0.889 H031 A1IKB 31 A1IKB H042 H3 H 0 0 N N N N N N 14.738 -0.250 18.917 -6.793 -0.640 0.894 H042 A1IKB 32 A1IKB H041 H4 H 0 0 N N N N N N 15.136 -0.729 20.602 -6.794 -0.645 -0.886 H041 A1IKB 33 A1IKB H051 H5 H 0 0 N N N N N N 17.263 -1.729 19.817 -5.147 1.209 -0.892 H051 A1IKB 34 A1IKB H052 H6 H 0 0 N N N N N N 16.865 -1.257 18.130 -5.145 1.213 0.888 H052 A1IKB 35 A1IKB H062 H7 H 0 0 N N N N N N 16.617 1.163 19.340 -4.343 -1.133 0.893 H062 A1IKB 36 A1IKB H061 H8 H 0 0 N N N N N N 17.825 0.410 20.436 -4.345 -1.138 -0.887 H061 A1IKB 37 A1IKB H071 H9 H 0 0 N N N N N N 19.388 0.089 18.633 -2.697 0.716 -0.893 H071 A1IKB 38 A1IKB H072 H10 H 0 0 N N N N N N 18.153 0.515 17.400 -2.696 0.720 0.887 H072 A1IKB 39 A1IKB H082 H11 H 0 0 N N N N N N 18.085 2.813 18.766 -1.894 -1.626 0.893 H082 A1IKB 40 A1IKB H081 H12 H 0 0 N N N N N N 19.733 2.299 19.262 -1.895 -1.630 -0.887 H081 A1IKB 41 A1IKB H091 H13 H 0 0 N N N N N N 20.544 3.142 17.329 -0.248 0.223 -0.893 H091 A1IKB 42 A1IKB H092 H14 H 0 0 N N N N N N 19.563 1.947 16.413 -0.247 0.228 0.887 H092 A1IKB 43 A1IKB H141 H15 H 0 0 N N N N N N 20.194 1.611 12.590 3.159 2.618 0.004 H141 A1IKB 44 A1IKB H191 H16 H 0 0 N N N N N N 18.101 3.318 9.256 7.337 1.656 -0.006 H191 A1IKB 45 A1IKB H201 H17 H 0 0 N N N N N N 16.857 4.812 10.789 6.816 -0.726 -0.009 H201 A1IKB 46 A1IKB H231 H18 H 0 0 N N N N N N 15.972 5.924 11.929 6.356 -2.621 -0.010 H231 A1IKB 47 A1IKB H251 H19 H 0 0 N N N N N N 15.247 7.264 15.808 3.399 -5.537 0.010 H251 A1IKB 48 A1IKB H261 H20 H 0 0 N N N N N N 16.896 5.683 16.748 1.607 -3.873 0.011 H261 A1IKB 49 A1IKB H101 H21 H 0 0 N N N N N N 17.791 3.741 17.144 0.357 -2.386 0.003 H101 A1IKB 50 A1IKB H281 H22 H 0 0 N N N N N N 12.891 -0.146 19.147 -10.083 2.236 -0.006 H281 A1IKB 51 A1IKB H1 H23 H 0 1 N N N N N N 19.994 0.635 8.260 7.062 5.070 0.004 H1 A1IKB 52 A1IKB H291 H24 H 0 0 N N N N N N 10.817 -1.742 18.046 -12.198 1.346 -0.012 H291 A1IKB 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IKB C02 O01 DOUB N N 1 A1IKB C04 C03 SING N N 2 A1IKB C05 C04 SING N N 3 A1IKB C06 C05 SING N N 4 A1IKB C07 C06 SING N N 5 A1IKB C08 C07 SING N N 6 A1IKB C09 C08 SING N N 7 A1IKB N10 C09 SING N N 8 A1IKB C11 N10 SING N N 9 A1IKB N12 C11 DOUB Y N 10 A1IKB C13 N12 SING Y N 11 A1IKB C14 C13 SING Y N 12 A1IKB C15 C14 DOUB Y N 13 A1IKB O17 C16 DOUB N N 14 A1IKB O18 C16 SING N N 15 A1IKB C16 C15 SING N N 16 A1IKB C19 C15 SING Y N 17 A1IKB C20 C19 DOUB Y N 18 A1IKB C21 C20 SING Y N 19 A1IKB C22 C21 SING Y N 20 A1IKB C23 C22 SING Y N 21 A1IKB N24 C23 DOUB Y N 22 A1IKB C25 N24 SING Y N 23 A1IKB C26 C25 DOUB Y N 24 A1IKB C27 C26 SING Y N 25 A1IKB C03 C02 SING N N 26 A1IKB N28 C02 SING N N 27 A1IKB O29 N28 SING N N 28 A1IKB C11 C27 SING Y N 29 A1IKB C13 C21 DOUB Y N 30 A1IKB C22 C27 DOUB Y N 31 A1IKB C03 H032 SING N N 32 A1IKB C03 H031 SING N N 33 A1IKB C04 H042 SING N N 34 A1IKB C04 H041 SING N N 35 A1IKB C05 H051 SING N N 36 A1IKB C05 H052 SING N N 37 A1IKB C06 H062 SING N N 38 A1IKB C06 H061 SING N N 39 A1IKB C07 H071 SING N N 40 A1IKB C07 H072 SING N N 41 A1IKB C08 H082 SING N N 42 A1IKB C08 H081 SING N N 43 A1IKB C09 H091 SING N N 44 A1IKB C09 H092 SING N N 45 A1IKB C14 H141 SING N N 46 A1IKB C19 H191 SING N N 47 A1IKB C20 H201 SING N N 48 A1IKB C23 H231 SING N N 49 A1IKB C25 H251 SING N N 50 A1IKB C26 H261 SING N N 51 A1IKB N10 H101 SING N N 52 A1IKB N28 H281 SING N N 53 A1IKB O18 H1 SING N N 54 A1IKB O29 H291 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IKB InChI InChI 1.06 "InChI=1S/C21H24N4O4/c26-19(25-29)6-4-2-1-3-5-10-23-20-16-9-11-22-13-17(16)15-8-7-14(21(27)28)12-18(15)24-20/h7-9,11-13,29H,1-6,10H2,(H,23,24)(H,25,26)(H,27,28)" A1IKB InChIKey InChI 1.06 RLZROBMWZRHTER-UHFFFAOYSA-N A1IKB SMILES_CANONICAL CACTVS 3.385 "ONC(=O)CCCCCCCNc1nc2cc(ccc2c3cnccc13)C(O)=O" A1IKB SMILES CACTVS 3.385 "ONC(=O)CCCCCCCNc1nc2cc(ccc2c3cnccc13)C(O)=O" A1IKB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)O)nc(c3c2cncc3)NCCCCCCCC(=O)NO" A1IKB SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)O)nc(c3c2cncc3)NCCCCCCCC(=O)NO" # _pdbx_chem_comp_identifier.comp_id A1IKB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[8-(oxidanylamino)-8-oxidanylidene-octyl]amino]benzo[c][2,6]naphthyridine-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IKB "Create component" 2024-08-06 PDBE A1IKB "Initial release" 2025-07-30 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IKB _pdbx_chem_comp_synonyms.name "5-[[8-(hydroxyamino)-8-oxooctyl]amino]benzo[c][2,6]naphthyridine-8-carboxylic acid" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #