data_A1IKF # _chem_comp.id A1IKF _chem_comp.name "N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H41 N5 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-07 _chem_comp.pdbx_modified_date 2025-08-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 683.772 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IKF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GDG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IKF C1 C1 C 0 1 N N N N N N 6.589 6.470 23.805 4.053 9.071 -0.882 C1 A1IKF 1 A1IKF C2 C2 C 0 1 N N N N N N 7.070 6.984 25.129 4.544 7.641 -1.115 C2 A1IKF 2 A1IKF C3 C3 C 0 1 N N N N N N 8.165 6.137 25.703 3.355 6.679 -1.067 C3 A1IKF 3 A1IKF C4 C4 C 0 1 Y N N N N N 8.430 3.881 26.535 2.877 4.359 -1.274 C4 A1IKF 4 A1IKF C5 C5 C 0 1 Y N N N N N 9.776 4.047 26.824 1.544 4.673 -1.053 C5 A1IKF 5 A1IKF C6 C6 C 0 1 Y N N N N N 10.495 2.973 27.309 0.591 3.672 -1.035 C6 A1IKF 6 A1IKF C7 C7 C 0 1 Y N N N N N 9.911 1.738 27.503 0.963 2.357 -1.239 C7 A1IKF 7 A1IKF C9 C8 C 0 1 Y N N N N N 6.854 -0.026 26.854 3.249 0.081 -0.630 C9 A1IKF 8 A1IKF C10 C9 C 0 1 Y N N N N N 6.781 -0.216 25.487 3.538 0.749 0.547 C10 A1IKF 9 A1IKF C11 C10 C 0 1 Y N N N N N 5.572 -0.562 24.951 4.137 0.071 1.598 C11 A1IKF 10 A1IKF C12 C11 C 0 1 Y N N N N N 4.449 -0.744 25.761 4.448 -1.284 1.468 C12 A1IKF 11 A1IKF C13 C12 C 0 1 Y N N N N N 4.499 -0.539 27.119 4.158 -1.952 0.288 C13 A1IKF 12 A1IKF C14 C13 C 0 1 Y N N N N N 5.727 -0.184 27.671 3.555 -1.273 -0.759 C14 A1IKF 13 A1IKF C15 C14 C 0 1 Y N N N N N 5.102 2.659 29.340 1.276 -3.593 -0.975 C15 A1IKF 14 A1IKF C17 C15 C 0 1 Y N N N N N 4.260 4.517 28.106 0.155 -3.822 1.134 C17 A1IKF 15 A1IKF C18 C16 C 0 1 Y N N N N N 5.398 5.246 28.421 -1.066 -3.682 0.508 C18 A1IKF 16 A1IKF O1 O1 O 0 1 N N N N N N 7.611 4.867 26.065 3.815 5.344 -1.285 O1 A1IKF 17 A1IKF C8 C17 C 0 1 Y N N N N N 8.579 1.609 27.202 2.296 2.039 -1.461 C8 A1IKF 18 A1IKF O2 O2 O 0 1 N N N N N N 8.056 0.343 27.431 2.661 0.745 -1.661 O2 A1IKF 19 A1IKF N1 N1 N 0 1 N N N N N N 5.883 0.035 29.072 3.256 -1.948 -1.950 N1 A1IKF 20 A1IKF S1 S1 S 0 1 N N N N N N 4.929 1.017 29.954 2.771 -3.531 -1.906 S1 A1IKF 21 A1IKF O3 O3 O 0 1 N N N N N N 3.591 0.591 29.734 3.747 -4.228 -1.145 O3 A1IKF 22 A1IKF O4 O4 O 0 1 N N N N N N 5.489 1.018 31.271 2.428 -3.883 -3.240 O4 A1IKF 23 A1IKF C16 C18 C 0 1 Y N N N N N 4.089 3.232 28.587 1.324 -3.777 0.395 C16 A1IKF 24 A1IKF C19 C19 C 0 1 Y N N N N N 6.410 4.682 29.188 -1.122 -3.501 -0.875 C19 A1IKF 25 A1IKF C20 C20 C 0 1 N N N N N N 7.674 5.410 29.533 -2.427 -3.350 -1.552 C20 A1IKF 26 A1IKF O5 O5 O 0 1 N N N N N N 8.563 4.856 30.182 -2.472 -3.193 -2.757 O5 A1IKF 27 A1IKF N2 N2 N 0 1 N N N N N N 7.784 6.667 29.113 -3.567 -3.388 -0.834 N2 A1IKF 28 A1IKF C21 C21 C 0 1 N N N N N N 8.720 7.596 29.728 -4.861 -3.238 -1.505 C21 A1IKF 29 A1IKF C22 C22 C 0 1 N N N N N N 8.278 7.963 31.122 -5.985 -3.318 -0.470 C22 A1IKF 30 A1IKF O6 O6 O 0 1 N N N N N N 9.171 8.927 31.660 -5.891 -2.204 0.421 O6 A1IKF 31 A1IKF C23 C23 C 0 1 N N N N N N 10.123 8.360 32.548 -6.900 -2.183 1.432 C23 A1IKF 32 A1IKF C24 C24 C 0 1 N N N N N N 11.294 9.283 32.671 -6.703 -0.955 2.323 C24 A1IKF 33 A1IKF O7 O7 O 0 1 N N N N N N 12.502 8.534 32.715 -6.913 0.231 1.554 O7 A1IKF 34 A1IKF C25 C25 C 0 1 N N N N N N 12.749 7.981 34.000 -6.752 1.441 2.296 C25 A1IKF 35 A1IKF C26 C26 C 0 1 N N N N N N 13.772 6.884 33.874 -7.000 2.639 1.377 C26 A1IKF 36 A1IKF N3 N3 N 0 1 N N N N N N 13.162 5.570 33.742 -8.397 2.637 0.938 N3 A1IKF 37 A1IKF C27 C27 C 0 1 N N N N N N 13.845 4.423 33.869 -8.846 3.606 0.116 C27 A1IKF 38 A1IKF C28 C28 C 0 1 N N N N N N 13.039 3.159 33.823 -10.284 3.604 -0.337 C28 A1IKF 39 A1IKF O8 O8 O 0 1 N N N N N N 15.066 4.408 34.023 -8.094 4.480 -0.260 O8 A1IKF 40 A1IKF C29 C29 C 0 1 Y N N N N N 6.249 3.385 29.648 0.061 -3.452 -1.614 C29 A1IKF 41 A1IKF N4 N4 N 0 1 N N N N N N 3.402 -1.123 24.933 5.033 -1.681 2.670 N4 A1IKF 42 A1IKF C30 C30 C 0 1 N N N N N N 2.026 -1.407 25.331 5.519 -3.026 2.984 C30 A1IKF 43 A1IKF C31 C31 C 0 1 N N N N N N 3.851 -1.173 23.632 5.075 -0.616 3.493 C31 A1IKF 44 A1IKF O9 O9 O 0 1 N N N N N N 3.196 -1.489 22.662 5.526 -0.621 4.623 O9 A1IKF 45 A1IKF N5 N5 N 0 1 N N N N N N 5.188 -0.839 23.646 4.543 0.456 2.876 N5 A1IKF 46 A1IKF C32 C32 C 0 1 N N N N N N 6.022 -0.785 22.457 4.411 1.797 3.450 C32 A1IKF 47 A1IKF C33 C33 C 0 1 Y N N N N N 7.813 2.665 26.747 3.253 3.041 -1.479 C33 A1IKF 48 A1IKF H1 H1 H 0 1 N N N N N N 5.789 7.123 23.426 3.572 9.135 0.095 H1 A1IKF 49 A1IKF H2 H2 H 0 1 N N N N N N 7.425 6.462 23.090 4.900 9.757 -0.915 H2 A1IKF 50 A1IKF H3 H3 H 0 1 N N N N N N 6.201 5.448 23.928 3.336 9.340 -1.658 H3 A1IKF 51 A1IKF H4 H4 H 0 1 N N N N N N 7.448 8.008 24.995 5.025 7.577 -2.091 H4 A1IKF 52 A1IKF H5 H5 H 0 1 N N N N N N 6.225 6.994 25.833 5.261 7.372 -0.339 H5 A1IKF 53 A1IKF H6 H6 H 0 1 N N N N N N 8.958 5.997 24.953 2.875 6.743 -0.091 H6 A1IKF 54 A1IKF H7 H7 H 0 1 N N N N N N 8.585 6.627 26.594 2.639 6.948 -1.844 H7 A1IKF 55 A1IKF H8 H8 H 0 1 N N N N N N 10.255 5.003 26.672 1.250 5.700 -0.893 H8 A1IKF 56 A1IKF H9 H9 H 0 1 N N N N N N 11.541 3.103 27.543 -0.446 3.919 -0.862 H9 A1IKF 57 A1IKF H10 H10 H 0 1 N N N N N N 10.483 0.902 27.879 0.217 1.577 -1.225 H10 A1IKF 58 A1IKF H11 H11 H 0 1 N N N N N N 7.653 -0.095 24.861 3.297 1.797 0.647 H11 A1IKF 59 A1IKF H12 H12 H 0 1 N N N N N N 3.619 -0.649 27.735 4.399 -3.000 0.186 H12 A1IKF 60 A1IKF H15 H13 H 0 1 N N N N N N 3.500 4.958 27.478 0.199 -3.961 2.204 H15 A1IKF 61 A1IKF H16 H14 H 0 1 N N N N N N 5.498 6.261 28.067 -1.978 -3.716 1.087 H16 A1IKF 62 A1IKF H13 H15 H 0 1 N N N N N N 5.809 -0.867 29.497 3.332 -1.488 -2.801 H13 A1IKF 63 A1IKF H14 H16 H 0 1 N N N N N N 3.182 2.684 28.380 2.277 -3.888 0.890 H14 A1IKF 64 A1IKF H17 H17 H 0 1 N N N N N N 7.210 6.981 28.357 -3.531 -3.513 0.127 H17 A1IKF 65 A1IKF H18 H18 H 0 1 N N N N N N 9.713 7.126 29.777 -4.899 -2.273 -2.010 H18 A1IKF 66 A1IKF H19 H19 H 0 1 N N N N N N 8.776 8.508 29.116 -4.984 -4.036 -2.238 H19 A1IKF 67 A1IKF H20 H20 H 0 1 N N N N N N 7.262 8.383 31.086 -6.949 -3.296 -0.978 H20 A1IKF 68 A1IKF H21 H21 H 0 1 N N N N N N 8.281 7.065 31.757 -5.893 -4.245 0.095 H21 A1IKF 69 A1IKF H22 H22 H 0 1 N N N N N N 9.663 8.216 33.537 -7.883 -2.138 0.964 H22 A1IKF 70 A1IKF H23 H23 H 0 1 N N N N N N 10.460 7.389 32.155 -6.827 -3.086 2.037 H23 A1IKF 71 A1IKF H24 H24 H 0 1 N N N N N N 11.317 9.960 31.804 -7.416 -0.985 3.147 H24 A1IKF 72 A1IKF H25 H25 H 0 1 N N N N N N 11.197 9.873 33.595 -5.688 -0.954 2.722 H25 A1IKF 73 A1IKF H26 H26 H 0 1 N N N N N N 13.130 8.765 34.672 -7.467 1.461 3.119 H26 A1IKF 74 A1IKF H27 H27 H 0 1 N N N N N N 11.815 7.569 34.410 -5.739 1.492 2.694 H27 A1IKF 75 A1IKF H29 H28 H 0 1 N N N N N N 14.408 6.890 34.771 -6.791 3.562 1.919 H29 A1IKF 76 A1IKF H28 H29 H 0 1 N N N N N N 14.390 7.078 32.985 -6.345 2.572 0.508 H28 A1IKF 77 A1IKF H30 H30 H 0 1 N N N N N N 12.183 5.519 33.546 -8.999 1.938 1.238 H30 A1IKF 78 A1IKF H31 H31 H 0 1 N N N N N N 13.707 2.293 33.945 -10.801 2.749 0.100 H31 A1IKF 79 A1IKF H32 H32 H 0 1 N N N N N N 12.298 3.167 34.636 -10.768 4.525 -0.013 H32 A1IKF 80 A1IKF H33 H33 H 0 1 N N N N N N 12.521 3.089 32.855 -10.323 3.536 -1.424 H33 A1IKF 81 A1IKF H34 H34 H 0 1 N N N N N N 7.022 2.933 30.252 0.025 -3.303 -2.683 H34 A1IKF 82 A1IKF H35 H35 H 0 1 N N N N N N 1.929 -1.298 26.421 6.566 -3.111 2.694 H35 A1IKF 83 A1IKF H36 H36 H 0 1 N N N N N N 1.347 -0.702 24.830 5.423 -3.207 4.055 H36 A1IKF 84 A1IKF H37 H37 H 0 1 N N N N N N 1.766 -2.436 25.041 4.930 -3.762 2.438 H37 A1IKF 85 A1IKF H38 H38 H 0 1 N N N N N N 7.045 -0.495 22.739 4.812 1.801 4.463 H38 A1IKF 86 A1IKF H39 H39 H 0 1 N N N N N N 6.041 -1.775 21.977 4.964 2.510 2.838 H39 A1IKF 87 A1IKF H40 H40 H 0 1 N N N N N N 5.611 -0.045 21.754 3.358 2.080 3.475 H40 A1IKF 88 A1IKF H41 H41 H 0 1 N N N N N N 6.756 2.542 26.562 4.291 2.795 -1.652 H41 A1IKF 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IKF C32 N5 SING N N 1 A1IKF O9 C31 DOUB N N 2 A1IKF C31 N5 SING N N 3 A1IKF C31 N4 SING N N 4 A1IKF N5 C11 SING N N 5 A1IKF C1 C2 SING N N 6 A1IKF N4 C30 SING N N 7 A1IKF N4 C12 SING N N 8 A1IKF C11 C10 DOUB Y N 9 A1IKF C11 C12 SING Y N 10 A1IKF C2 C3 SING N N 11 A1IKF C10 C9 SING Y N 12 A1IKF C3 O1 SING N N 13 A1IKF C12 C13 DOUB Y N 14 A1IKF O1 C4 SING N N 15 A1IKF C4 C33 DOUB Y N 16 A1IKF C4 C5 SING Y N 17 A1IKF C33 C8 SING Y N 18 A1IKF C5 C6 DOUB Y N 19 A1IKF C9 O2 SING N N 20 A1IKF C9 C14 DOUB Y N 21 A1IKF C13 C14 SING Y N 22 A1IKF C8 O2 SING N N 23 A1IKF C8 C7 DOUB Y N 24 A1IKF C6 C7 SING Y N 25 A1IKF C14 N1 SING N N 26 A1IKF C17 C18 DOUB Y N 27 A1IKF C17 C16 SING Y N 28 A1IKF C18 C19 SING Y N 29 A1IKF C16 C15 DOUB Y N 30 A1IKF N1 S1 SING N N 31 A1IKF N2 C20 SING N N 32 A1IKF N2 C21 SING N N 33 A1IKF C19 C20 SING N N 34 A1IKF C19 C29 DOUB Y N 35 A1IKF C15 C29 SING Y N 36 A1IKF C15 S1 SING N N 37 A1IKF C20 O5 DOUB N N 38 A1IKF C21 C22 SING N N 39 A1IKF O3 S1 DOUB N N 40 A1IKF S1 O4 DOUB N N 41 A1IKF C22 O6 SING N N 42 A1IKF O6 C23 SING N N 43 A1IKF C23 C24 SING N N 44 A1IKF C24 O7 SING N N 45 A1IKF O7 C25 SING N N 46 A1IKF N3 C27 SING N N 47 A1IKF N3 C26 SING N N 48 A1IKF C28 C27 SING N N 49 A1IKF C27 O8 DOUB N N 50 A1IKF C26 C25 SING N N 51 A1IKF C1 H1 SING N N 52 A1IKF C1 H2 SING N N 53 A1IKF C1 H3 SING N N 54 A1IKF C2 H4 SING N N 55 A1IKF C2 H5 SING N N 56 A1IKF C3 H6 SING N N 57 A1IKF C3 H7 SING N N 58 A1IKF C5 H8 SING N N 59 A1IKF C6 H9 SING N N 60 A1IKF C7 H10 SING N N 61 A1IKF C10 H11 SING N N 62 A1IKF C13 H12 SING N N 63 A1IKF C17 H15 SING N N 64 A1IKF C18 H16 SING N N 65 A1IKF N1 H13 SING N N 66 A1IKF C16 H14 SING N N 67 A1IKF N2 H17 SING N N 68 A1IKF C21 H18 SING N N 69 A1IKF C21 H19 SING N N 70 A1IKF C22 H20 SING N N 71 A1IKF C22 H21 SING N N 72 A1IKF C23 H22 SING N N 73 A1IKF C23 H23 SING N N 74 A1IKF C24 H24 SING N N 75 A1IKF C24 H25 SING N N 76 A1IKF C25 H26 SING N N 77 A1IKF C25 H27 SING N N 78 A1IKF C26 H29 SING N N 79 A1IKF C26 H28 SING N N 80 A1IKF N3 H30 SING N N 81 A1IKF C28 H31 SING N N 82 A1IKF C28 H32 SING N N 83 A1IKF C28 H33 SING N N 84 A1IKF C29 H34 SING N N 85 A1IKF C30 H35 SING N N 86 A1IKF C30 H36 SING N N 87 A1IKF C30 H37 SING N N 88 A1IKF C32 H38 SING N N 89 A1IKF C32 H39 SING N N 90 A1IKF C32 H40 SING N N 91 A1IKF C33 H41 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IKF InChI InChI 1.06 "InChI=1S/C33H41N5O9S/c1-5-14-46-25-9-7-10-26(20-25)47-31-22-30-29(37(3)33(41)38(30)4)21-28(31)36-48(42,43)27-11-6-8-24(19-27)32(40)35-13-16-45-18-17-44-15-12-34-23(2)39/h6-11,19-22,36H,5,12-18H2,1-4H3,(H,34,39)(H,35,40)" A1IKF InChIKey InChI 1.06 RIAWPTKWSYPUDU-UHFFFAOYSA-N A1IKF SMILES_CANONICAL CACTVS 3.385 "CCCOc1cccc(Oc2cc3N(C)C(=O)N(C)c3cc2N[S](=O)(=O)c4cccc(c4)C(=O)NCCOCCOCCNC(C)=O)c1" A1IKF SMILES CACTVS 3.385 "CCCOc1cccc(Oc2cc3N(C)C(=O)N(C)c3cc2N[S](=O)(=O)c4cccc(c4)C(=O)NCCOCCOCCNC(C)=O)c1" A1IKF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCOc1cccc(c1)Oc2cc3c(cc2NS(=O)(=O)c4cccc(c4)C(=O)NCCOCCOCCNC(=O)C)N(C(=O)N3C)C" A1IKF SMILES "OpenEye OEToolkits" 2.0.7 "CCCOc1cccc(c1)Oc2cc3c(cc2NS(=O)(=O)c4cccc(c4)C(=O)NCCOCCOCCNC(=O)C)N(C(=O)N3C)C" # _pdbx_chem_comp_identifier.comp_id A1IKF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2-[2-(2-acetamidoethoxy)ethoxy]ethyl]-3-[[1,3-dimethyl-2-oxidanylidene-6-(3-propoxyphenoxy)benzimidazol-5-yl]sulfamoyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IKF "Create component" 2024-08-07 PDBE A1IKF "Initial release" 2025-08-13 RCSB #