data_A1IKM # _chem_comp.id A1IKM _chem_comp.name "(4~{R})-6-[(~{E})-5-(7-methoxy-3,4-dihydro-2~{H}-quinolin-1-yl)pent-1-enyl]-4-methyl-8-morpholin-4-ylcarbonyl-1,3,4,5-tetrahydro-1,5-benzodiazepin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-12 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.647 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IKM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GET _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IKM C10 C1 C 0 1 Y N N N N N -12.786 13.466 -11.819 4.751 0.265 0.164 C10 A1IKM 1 A1IKM C19 C2 C 0 1 N N N N N N -15.082 15.080 -13.368 5.639 -4.038 0.746 C19 A1IKM 2 A1IKM C23 C3 C 0 1 N N N N N N -8.779 16.509 -11.008 -0.251 0.334 0.963 C23 A1IKM 3 A1IKM C20 C4 C 0 1 Y N N N N N -11.447 15.309 -11.103 2.494 -0.363 0.775 C20 A1IKM 4 A1IKM C12 C5 C 0 1 N N N N N N -13.924 15.560 -11.232 4.338 -1.993 1.128 C12 A1IKM 5 A1IKM C21 C6 C 0 1 Y N N N N N -10.282 14.550 -11.233 2.036 0.883 0.357 C21 A1IKM 6 A1IKM C18 C7 C 0 1 N N N N N N -15.196 16.130 -14.465 5.463 -4.958 -0.468 C18 A1IKM 7 A1IKM C11 C8 C 0 1 Y N N N N N -12.699 14.826 -11.404 3.851 -0.674 0.682 C11 A1IKM 8 A1IKM C29 C9 C 0 1 N N N N N N -6.120 21.475 -14.547 -5.427 -3.403 -0.456 C29 A1IKM 9 A1IKM C30 C10 C 0 1 N N N N N N -6.078 20.503 -15.757 -6.883 -3.151 -0.059 C30 A1IKM 10 A1IKM C28 C11 C 0 1 N N N N N N -6.283 20.690 -13.251 -4.551 -2.391 0.292 C28 A1IKM 11 A1IKM C15 C12 C 0 1 N N N N N N -16.218 16.397 -11.805 5.763 -2.102 -0.867 C15 A1IKM 12 A1IKM C16 C13 C 0 1 N N N N N N -16.537 17.347 -12.968 5.581 -3.115 -2.002 C16 A1IKM 13 A1IKM C02 C14 C 0 1 N N R N N N -8.931 11.132 -11.258 2.753 4.131 0.322 C02 A1IKM 14 A1IKM C03 C15 C 0 1 N N N N N N -8.172 10.242 -12.229 2.591 5.474 -0.392 C03 A1IKM 15 A1IKM C04 C16 C 0 1 N N N N N N -10.233 10.464 -10.743 4.171 4.021 0.875 C04 A1IKM 16 A1IKM C05 C17 C 0 1 N N N N N N -11.179 10.338 -11.878 5.142 3.712 -0.235 C05 A1IKM 17 A1IKM C08 C18 C 0 1 Y N N N N N -11.629 12.683 -11.971 4.298 1.502 -0.250 C08 A1IKM 18 A1IKM C09 C19 C 0 1 Y N N N N N -10.390 13.218 -11.663 2.940 1.818 -0.168 C09 A1IKM 19 A1IKM C22 C20 C 0 1 N N N N N N -9.021 15.162 -10.900 0.602 1.219 0.467 C22 A1IKM 20 A1IKM C24 C21 C 0 1 N N N N N N -7.492 17.117 -10.632 -1.714 0.677 1.075 C24 A1IKM 21 A1IKM C25 C22 C 0 1 N N N N N N -6.952 17.982 -11.779 -2.544 -0.385 0.351 C25 A1IKM 22 A1IKM C26 C23 C 0 1 N N N N N N -7.768 19.284 -12.005 -4.029 -0.036 0.464 C26 A1IKM 23 A1IKM C31 C24 C 0 1 Y N N N N N -7.153 19.480 -15.724 -7.184 -1.676 -0.147 C31 A1IKM 24 A1IKM C32 C25 C 0 1 Y N N N N N -7.877 19.207 -14.507 -6.180 -0.725 -0.219 C32 A1IKM 25 A1IKM C33 C26 C 0 1 Y N N N N N -7.534 18.799 -16.872 -8.513 -1.280 -0.152 C33 A1IKM 26 A1IKM C34 C27 C 0 1 Y N N N N N -8.574 17.820 -16.873 -8.847 0.056 -0.225 C34 A1IKM 27 A1IKM C35 C28 C 0 1 Y N N N N N -9.276 17.563 -15.718 -7.846 1.016 -0.292 C35 A1IKM 28 A1IKM C36 C29 C 0 1 Y N N N N N -8.913 18.241 -14.501 -6.519 0.627 -0.289 C36 A1IKM 29 A1IKM C38 C30 C 0 1 N N N N N N -11.019 16.397 -14.537 -9.561 2.661 -0.362 C38 A1IKM 30 A1IKM N01 N1 N 0 1 N N N N N N -9.238 12.391 -11.862 2.487 3.047 -0.627 N01 A1IKM 31 A1IKM N07 N2 N 0 1 N N N N N N -11.844 11.324 -12.430 5.200 2.461 -0.737 N07 A1IKM 32 A1IKM N14 N3 N 0 1 N N N N N N -14.990 15.673 -12.017 5.210 -2.683 0.367 N14 A1IKM 33 A1IKM N27 N4 N 0 1 N N N N N N -7.525 19.890 -13.298 -4.826 -1.053 -0.236 N27 A1IKM 34 A1IKM O06 O1 O 0 1 N N N N N N -11.369 9.193 -12.361 5.865 4.582 -0.674 O06 A1IKM 35 A1IKM O13 O2 O 0 1 N N N N N N -14.021 16.200 -10.147 3.951 -2.458 2.183 O13 A1IKM 36 A1IKM O17 O3 O 0 1 N N N N N N -15.552 17.433 -13.986 6.119 -4.377 -1.598 O17 A1IKM 37 A1IKM O37 O4 O 0 1 N N N N N N -10.281 16.623 -15.736 -8.170 2.334 -0.361 O37 A1IKM 38 A1IKM H1 H1 H 0 1 N N N N N N -13.754 13.031 -12.019 5.801 0.024 0.093 H1 A1IKM 39 A1IKM H2 H2 H 0 1 N N N N N N -15.970 14.432 -13.408 5.026 -4.400 1.572 H2 A1IKM 40 A1IKM H3 H3 H 0 1 N N N N N N -14.180 14.478 -13.550 6.687 -4.022 1.046 H3 A1IKM 41 A1IKM H4 H4 H 0 1 N N N N N N -9.564 17.148 -11.384 0.103 -0.634 1.288 H4 A1IKM 42 A1IKM H5 H5 H 0 1 N N N N N N -11.361 16.326 -10.749 1.801 -1.086 1.179 H5 A1IKM 43 A1IKM H6 H6 H 0 1 N N N N N N -15.965 15.802 -15.180 5.902 -5.932 -0.254 H6 A1IKM 44 A1IKM H7 H7 H 0 1 N N N N N N -14.225 16.202 -14.977 4.401 -5.076 -0.685 H7 A1IKM 45 A1IKM H8 H8 H 0 1 N N N N N N -5.183 22.050 -14.509 -5.139 -4.417 -0.177 H8 A1IKM 46 A1IKM H9 H9 H 0 1 N N N N N N -6.969 22.165 -14.664 -5.308 -3.269 -1.532 H9 A1IKM 47 A1IKM H10 H10 H 0 1 N N N N N N -5.106 19.988 -15.758 -7.543 -3.696 -0.734 H10 A1IKM 48 A1IKM H11 H11 H 0 1 N N N N N N -6.183 21.091 -16.681 -7.045 -3.494 0.962 H11 A1IKM 49 A1IKM H12 H12 H 0 1 N N N N N N -5.422 20.018 -13.121 -4.786 -2.419 1.356 H12 A1IKM 50 A1IKM H13 H13 H 0 1 N N N N N N -6.333 21.391 -12.404 -3.499 -2.636 0.143 H13 A1IKM 51 A1IKM H14 H14 H 0 1 N N N N N N -16.127 16.986 -10.881 6.824 -1.890 -0.730 H14 A1IKM 52 A1IKM H15 H15 H 0 1 N N N N N N -17.042 15.675 -11.700 5.234 -1.180 -1.108 H15 A1IKM 53 A1IKM H16 H16 H 0 1 N N N N N N -16.679 18.355 -12.551 4.520 -3.226 -2.224 H16 A1IKM 54 A1IKM H17 H17 H 0 1 N N N N N N -17.474 17.007 -13.433 6.104 -2.763 -2.891 H17 A1IKM 55 A1IKM H18 H18 H 0 1 N N N N N N -8.283 11.304 -10.386 2.040 4.072 1.145 H18 A1IKM 56 A1IKM H19 H19 H 0 1 N N N N N N -7.946 9.280 -11.746 3.307 5.538 -1.211 H19 A1IKM 57 A1IKM H20 H20 H 0 1 N N N N N N -8.788 10.067 -13.124 1.579 5.555 -0.788 H20 A1IKM 58 A1IKM H21 H21 H 0 1 N N N N N N -7.233 10.735 -12.521 2.772 6.285 0.313 H21 A1IKM 59 A1IKM H22 H22 H 0 1 N N N N N N -10.681 11.085 -9.954 4.449 4.964 1.345 H22 A1IKM 60 A1IKM H23 H23 H 0 1 N N N N N N -10.004 9.467 -10.339 4.209 3.223 1.616 H23 A1IKM 61 A1IKM H24 H24 H 0 1 N N N N N N -8.223 14.527 -10.546 0.248 2.187 0.142 H24 A1IKM 62 A1IKM H25 H25 H 0 1 N N N N N N -6.767 16.321 -10.407 -2.001 0.708 2.126 H25 A1IKM 63 A1IKM H26 H26 H 0 1 N N N N N N -7.635 17.746 -9.741 -1.894 1.651 0.621 H26 A1IKM 64 A1IKM H27 H27 H 0 1 N N N N N N -6.978 17.389 -12.705 -2.257 -0.415 -0.700 H27 A1IKM 65 A1IKM H28 H28 H 0 1 N N N N N N -5.912 18.257 -11.549 -2.363 -1.359 0.805 H28 A1IKM 66 A1IKM H29 H29 H 0 1 N N N N N N -7.496 20.008 -11.223 -4.317 -0.010 1.515 H29 A1IKM 67 A1IKM H30 H30 H 0 1 N N N N N N -8.839 19.044 -11.927 -4.209 0.940 0.014 H30 A1IKM 68 A1IKM H31 H31 H 0 1 N N N N N N -7.025 19.018 -17.799 -9.294 -2.025 -0.100 H31 A1IKM 69 A1IKM H32 H32 H 0 1 N N N N N N -8.809 17.282 -17.779 -9.885 0.355 -0.231 H32 A1IKM 70 A1IKM H33 H33 H 0 1 N N N N N N -9.432 18.013 -13.582 -5.741 1.373 -0.342 H33 A1IKM 71 A1IKM H34 H34 H 0 1 N N N N N N -11.780 15.623 -14.715 -9.679 3.743 -0.420 H34 A1IKM 72 A1IKM H35 H35 H 0 1 N N N N N N -10.335 16.063 -13.743 -10.044 2.196 -1.221 H35 A1IKM 73 A1IKM H36 H36 H 0 1 N N N N N N -11.512 17.331 -14.228 -10.020 2.295 0.556 H36 A1IKM 74 A1IKM H37 H37 H 0 1 N N N N N N -9.228 12.207 -12.845 2.873 3.258 -1.535 H37 A1IKM 75 A1IKM H38 H38 H 0 1 N N N N N N -12.497 11.140 -13.165 5.850 2.230 -1.419 H38 A1IKM 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IKM C34 C33 DOUB Y N 1 A1IKM C34 C35 SING Y N 2 A1IKM C33 C31 SING Y N 3 A1IKM C30 C31 SING N N 4 A1IKM C30 C29 SING N N 5 A1IKM O37 C35 SING N N 6 A1IKM O37 C38 SING N N 7 A1IKM C31 C32 DOUB Y N 8 A1IKM C35 C36 DOUB Y N 9 A1IKM C29 C28 SING N N 10 A1IKM C32 C36 SING Y N 11 A1IKM C32 N27 SING N N 12 A1IKM C18 O17 SING N N 13 A1IKM C18 C19 SING N N 14 A1IKM O17 C16 SING N N 15 A1IKM C19 N14 SING N N 16 A1IKM N27 C28 SING N N 17 A1IKM N27 C26 SING N N 18 A1IKM C16 C15 SING N N 19 A1IKM N07 C08 SING N N 20 A1IKM N07 C05 SING N N 21 A1IKM O06 C05 DOUB N N 22 A1IKM C03 C02 SING N N 23 A1IKM N14 C15 SING N N 24 A1IKM N14 C12 SING N N 25 A1IKM C26 C25 SING N N 26 A1IKM C08 C10 DOUB Y N 27 A1IKM C08 C09 SING Y N 28 A1IKM C05 C04 SING N N 29 A1IKM N01 C09 SING N N 30 A1IKM N01 C02 SING N N 31 A1IKM C10 C11 SING Y N 32 A1IKM C25 C24 SING N N 33 A1IKM C09 C21 DOUB Y N 34 A1IKM C11 C12 SING N N 35 A1IKM C11 C20 DOUB Y N 36 A1IKM C02 C04 SING N N 37 A1IKM C21 C20 SING Y N 38 A1IKM C21 C22 SING N N 39 A1IKM C12 O13 DOUB N N 40 A1IKM C23 C22 DOUB N E 41 A1IKM C23 C24 SING N N 42 A1IKM C10 H1 SING N N 43 A1IKM C19 H2 SING N N 44 A1IKM C19 H3 SING N N 45 A1IKM C23 H4 SING N N 46 A1IKM C20 H5 SING N N 47 A1IKM C18 H6 SING N N 48 A1IKM C18 H7 SING N N 49 A1IKM C29 H8 SING N N 50 A1IKM C29 H9 SING N N 51 A1IKM C30 H10 SING N N 52 A1IKM C30 H11 SING N N 53 A1IKM C28 H12 SING N N 54 A1IKM C28 H13 SING N N 55 A1IKM C15 H14 SING N N 56 A1IKM C15 H15 SING N N 57 A1IKM C16 H16 SING N N 58 A1IKM C16 H17 SING N N 59 A1IKM C02 H18 SING N N 60 A1IKM C03 H19 SING N N 61 A1IKM C03 H20 SING N N 62 A1IKM C03 H21 SING N N 63 A1IKM C04 H22 SING N N 64 A1IKM C04 H23 SING N N 65 A1IKM C22 H24 SING N N 66 A1IKM C24 H25 SING N N 67 A1IKM C24 H26 SING N N 68 A1IKM C25 H27 SING N N 69 A1IKM C25 H28 SING N N 70 A1IKM C26 H29 SING N N 71 A1IKM C26 H30 SING N N 72 A1IKM C33 H31 SING N N 73 A1IKM C34 H32 SING N N 74 A1IKM C36 H33 SING N N 75 A1IKM C38 H34 SING N N 76 A1IKM C38 H35 SING N N 77 A1IKM C38 H36 SING N N 78 A1IKM N01 H37 SING N N 79 A1IKM N07 H38 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IKM InChI InChI 1.06 "InChI=1S/C30H38N4O4/c1-21-17-28(35)32-26-19-24(30(36)34-13-15-38-16-14-34)18-23(29(26)31-21)7-4-3-5-11-33-12-6-8-22-9-10-25(37-2)20-27(22)33/h4,7,9-10,18-21,31H,3,5-6,8,11-17H2,1-2H3,(H,32,35)/b7-4+/t21-/m1/s1" A1IKM InChIKey InChI 1.06 YARRLUKCMVZYJK-HXRGIAOBSA-N A1IKM SMILES_CANONICAL CACTVS 3.385 "COc1ccc2CCCN(CCC\C=C\c3cc(cc4NC(=O)C[C@@H](C)Nc34)C(=O)N5CCOCC5)c2c1" A1IKM SMILES CACTVS 3.385 "COc1ccc2CCCN(CCCC=Cc3cc(cc4NC(=O)C[CH](C)Nc34)C(=O)N5CCOCC5)c2c1" A1IKM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC(=O)Nc2cc(cc(c2N1)/C=C/CCCN3CCCc4c3cc(cc4)OC)C(=O)N5CCOCC5" A1IKM SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(=O)Nc2cc(cc(c2N1)C=CCCCN3CCCc4c3cc(cc4)OC)C(=O)N5CCOCC5" # _pdbx_chem_comp_identifier.comp_id A1IKM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R})-6-[(~{E})-5-(7-methoxy-3,4-dihydro-2~{H}-quinolin-1-yl)pent-1-enyl]-4-methyl-8-morpholin-4-ylcarbonyl-1,3,4,5-tetrahydro-1,5-benzodiazepin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IKM "Create component" 2024-08-12 PDBE A1IKM "Initial release" 2025-08-20 RCSB #