data_A1IKN # _chem_comp.id A1IKN _chem_comp.name "3-(3-bromanyl-4-methyl-phenyl)-2-pyridin-3-yl-1,2-dihydrobenzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H14 Br N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-12 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.239 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IKN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GFA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IKN C1 C1 C 0 1 N N N N N N 20.124 21.500 4.149 3.920 1.158 1.669 C1 A1IKN 1 A1IKN C2 C2 C 0 1 Y N N N N N 19.282 21.666 2.952 2.532 0.711 1.288 C2 A1IKN 2 A1IKN C3 C3 C 0 1 Y N N N N N 18.178 22.512 2.981 1.450 1.087 2.063 C3 A1IKN 3 A1IKN C4 C4 C 0 1 Y N N N N N 17.400 22.711 1.867 0.176 0.679 1.717 C4 A1IKN 4 A1IKN C5 C5 C 0 1 Y N N N N N 17.593 21.901 0.762 -0.017 -0.109 0.590 C5 A1IKN 5 A1IKN C6 C6 C 0 1 Y N N N N N 16.700 23.130 -1.299 -2.344 0.284 -0.155 C6 A1IKN 6 A1IKN C7 C7 C 0 1 Y N N N N N 17.810 24.024 -1.636 -2.277 1.756 -0.274 C7 A1IKN 7 A1IKN C8 C8 C 0 1 Y N N N N N 17.507 25.280 -2.150 -3.448 2.516 -0.370 C8 A1IKN 8 A1IKN C9 C9 C 0 1 Y N N N N N 18.535 26.148 -2.467 -3.331 3.892 -0.473 C9 A1IKN 9 A1IKN C11 C10 C 0 1 Y N N N N N 19.152 23.682 -1.514 -1.045 2.412 -0.287 C11 A1IKN 10 A1IKN C12 C11 C 0 1 Y N N N N N 14.838 22.085 -1.469 -3.119 -1.753 -0.189 C12 A1IKN 11 A1IKN C14 C12 C 0 1 Y N N N N N 13.024 20.608 -1.054 -3.283 -4.141 -0.016 C14 A1IKN 12 A1IKN C16 C13 C 0 1 Y N N N N N 14.967 20.478 0.374 -1.206 -3.056 0.510 C16 A1IKN 13 A1IKN C18 C14 C 0 1 Y N N N N N 18.689 21.064 0.700 1.071 -0.484 -0.186 C18 A1IKN 14 A1IKN C19 C15 C 0 1 Y N N N N N 19.499 20.957 1.801 2.342 -0.069 0.162 C19 A1IKN 15 A1IKN N1 N1 N 0 1 Y N N N N N 16.756 22.105 -0.375 -1.308 -0.524 0.237 N1 A1IKN 16 A1IKN C10 C16 C 0 1 Y N N N N N 19.826 25.727 -2.291 -2.072 4.465 -0.479 C10 A1IKN 17 A1IKN N2 N2 N 0 1 Y N N N N N 20.156 24.517 -1.810 -0.985 3.723 -0.392 N2 A1IKN 18 A1IKN N3 N3 N 0 1 Y N N N N N 15.622 23.078 -2.047 -3.404 -0.445 -0.403 N3 A1IKN 19 A1IKN C13 C17 C 0 1 Y N N N N N 13.559 21.637 -1.798 -3.867 -2.929 -0.303 C13 A1IKN 20 A1IKN C15 C18 C 0 1 Y N N N N N 13.697 20.054 0.037 -1.960 -4.205 0.400 C15 A1IKN 21 A1IKN C17 C19 C 0 1 Y N N N N N 15.495 21.529 -0.373 -1.775 -1.825 0.219 C17 A1IKN 22 A1IKN BR1 BR1 BR 0 0 N N N N N N 20.999 19.770 1.778 3.825 -0.580 -0.894 BR1 A1IKN 23 A1IKN H1 H1 H 0 1 N N N N N N 20.948 22.228 4.122 4.370 0.420 2.332 H1 A1IKN 24 A1IKN H2 H2 H 0 1 N N N N N N 19.516 21.667 5.051 4.529 1.257 0.770 H2 A1IKN 25 A1IKN H3 H3 H 0 1 N N N N N N 20.536 20.480 4.169 3.865 2.119 2.179 H3 A1IKN 26 A1IKN H4 H4 H 0 1 N N N N N N 17.928 23.023 3.899 1.600 1.700 2.939 H4 A1IKN 27 A1IKN H5 H5 H 0 1 N N N N N N 16.649 23.487 1.854 -0.668 0.973 2.323 H5 A1IKN 28 A1IKN H7 H7 H 0 1 N N N N N N 16.479 25.574 -2.300 -4.418 2.042 -0.363 H7 A1IKN 29 A1IKN H8 H8 H 0 1 N N N N N N 18.324 27.137 -2.845 -4.213 4.510 -0.549 H8 A1IKN 30 A1IKN H9 H9 H 0 1 N N N N N N 19.398 22.691 -1.162 -0.132 1.839 -0.209 H9 A1IKN 31 A1IKN H10 H10 H 0 1 N N N N N N 12.054 20.218 -1.323 -3.862 -5.049 -0.098 H10 A1IKN 32 A1IKN H11 H11 H 0 1 N N N N N N 15.524 20.018 1.177 -0.174 -3.114 0.824 H11 A1IKN 33 A1IKN H12 H12 H 0 1 N N N N N N 18.904 20.504 -0.198 0.923 -1.097 -1.063 H12 A1IKN 34 A1IKN H13 H13 H 0 1 N N N N N N 20.624 26.406 -2.554 -1.978 5.538 -0.560 H13 A1IKN 35 A1IKN H15 H15 H 0 1 N N N N N N 13.005 22.083 -2.611 -4.901 -2.886 -0.614 H15 A1IKN 36 A1IKN H16 H16 H 0 1 N N N N N N 13.218 19.284 0.624 -1.513 -5.163 0.622 H16 A1IKN 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IKN C9 C10 DOUB Y N 1 A1IKN C9 C8 SING Y N 2 A1IKN C10 N2 SING Y N 3 A1IKN C8 C7 DOUB Y N 4 A1IKN N3 C12 SING Y N 5 A1IKN N3 C6 DOUB Y N 6 A1IKN N2 C11 DOUB Y N 7 A1IKN C13 C12 DOUB Y N 8 A1IKN C13 C14 SING Y N 9 A1IKN C7 C11 SING Y N 10 A1IKN C7 C6 SING N N 11 A1IKN C12 C17 SING Y N 12 A1IKN C6 N1 SING Y N 13 A1IKN C14 C15 DOUB Y N 14 A1IKN N1 C17 SING Y N 15 A1IKN N1 C5 SING N N 16 A1IKN C17 C16 DOUB Y N 17 A1IKN C15 C16 SING Y N 18 A1IKN C18 C5 DOUB Y N 19 A1IKN C18 C19 SING Y N 20 A1IKN C5 C4 SING Y N 21 A1IKN BR1 C19 SING N N 22 A1IKN C19 C2 DOUB Y N 23 A1IKN C4 C3 DOUB Y N 24 A1IKN C2 C3 SING Y N 25 A1IKN C2 C1 SING N N 26 A1IKN C1 H1 SING N N 27 A1IKN C1 H2 SING N N 28 A1IKN C1 H3 SING N N 29 A1IKN C3 H4 SING N N 30 A1IKN C4 H5 SING N N 31 A1IKN C8 H7 SING N N 32 A1IKN C9 H8 SING N N 33 A1IKN C11 H9 SING N N 34 A1IKN C14 H10 SING N N 35 A1IKN C16 H11 SING N N 36 A1IKN C18 H12 SING N N 37 A1IKN C10 H13 SING N N 38 A1IKN C13 H15 SING N N 39 A1IKN C15 H16 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IKN InChI InChI 1.06 "InChI=1S/C19H14BrN3/c1-13-8-9-15(11-16(13)20)23-18-7-3-2-6-17(18)22-19(23)14-5-4-10-21-12-14/h2-12H,1H3" A1IKN InChIKey InChI 1.06 GWYZPCYZNVDZBS-UHFFFAOYSA-N A1IKN SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1Br)n2c3ccccc3nc2c4cccnc4" A1IKN SMILES CACTVS 3.385 "Cc1ccc(cc1Br)n2c3ccccc3nc2c4cccnc4" A1IKN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Br)n2c3ccccc3nc2c4cccnc4" A1IKN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Br)n2c3ccccc3nc2c4cccnc4" # _pdbx_chem_comp_identifier.comp_id A1IKN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(3-bromanyl-4-methyl-phenyl)-2-pyridin-3-yl-benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IKN "Create component" 2024-08-12 PDBE A1IKN "Other modification" 2024-09-18 PDBE A1IKN "Modify PCM" 2024-09-27 PDBE A1IKN "Initial release" 2025-08-20 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IKN _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #