data_A1IKP # _chem_comp.id A1IKP _chem_comp.name TRIPHOSPHOSERINE _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H10 N O12 P3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms "(7R,13aS)-2,3,9,10-tetramethoxy-5,8,13,13a-tetrahydro-6H-isoquinolino[3,2-a]isoquinoline; tetrahydropalmatine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-12 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.032 _chem_comp.one_letter_code S _chem_comp.three_letter_code A1IKP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GD9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IKP N N1 N 0 1 N N N Y Y N 72.485 91.864 101.227 -4.351 -2.159 -0.258 N A1IKP 1 A1IKP CA C1 C 0 1 N N S N Y N 72.493 93.303 101.040 -4.513 -0.901 0.483 CA A1IKP 2 A1IKP C C2 C 0 1 N N N N Y Y 73.698 94.186 101.349 -5.949 -0.452 0.402 C A1IKP 3 A1IKP O O1 O 0 1 N N N N Y Y 73.537 95.337 101.832 -6.667 -0.876 -0.473 O A1IKP 4 A1IKP CB C3 C 0 1 N N N N N N 71.320 93.787 101.881 -3.608 0.171 -0.128 CB A1IKP 5 A1IKP OG O2 O 0 1 N N N N N N 71.268 92.989 103.028 -2.240 -0.200 0.053 OG A1IKP 6 A1IKP OD1 O3 O 0 1 N N N N N N 71.879 92.663 105.509 -1.038 0.764 -2.077 OD1 A1IKP 7 A1IKP OD2 O4 O 0 1 N N N N N N 72.549 94.768 104.392 -1.133 2.068 0.082 OD2 A1IKP 8 A1IKP OE O5 O 0 1 N N N N N N 70.074 94.393 104.980 0.377 0.046 0.019 OE A1IKP 9 A1IKP OZ1 O6 O 0 1 N N N N N N 67.747 94.169 106.065 1.980 1.417 1.589 OZ1 A1IKP 10 A1IKP OZ2 O7 O 0 1 N N N N N N 69.024 92.124 105.543 2.202 1.512 -0.924 OZ2 A1IKP 11 A1IKP OH O8 O 0 1 N N N N N N 68.002 93.446 103.586 2.911 -0.624 0.218 OH A1IKP 12 A1IKP OI1 O9 O 0 1 N N N N N N 68.200 94.201 101.135 4.973 0.190 -0.990 OI1 A1IKP 13 A1IKP OI2 O10 O 0 1 N N N N N N 66.605 95.373 102.603 5.215 -0.370 1.459 OI2 A1IKP 14 A1IKP OI3 O11 O 0 1 N N N N N N 69.024 95.722 102.887 4.898 -2.251 -0.350 OI3 A1IKP 15 A1IKP PD P1 P 0 1 N N N N N N 71.484 93.707 104.495 -1.011 0.699 -0.469 PD A1IKP 16 A1IKP PT P2 P 0 1 N N N N N N 67.959 94.712 102.534 4.510 -0.743 0.061 PT A1IKP 17 A1IKP PZ P3 P 0 1 N N N N N N 68.688 93.520 105.080 1.875 0.608 0.201 PZ A1IKP 18 A1IKP H H1 H 0 1 N N N Y Y N 71.593 91.498 100.961 -4.889 -2.900 0.165 H A1IKP 19 A1IKP H2 H2 H 0 1 N Y N Y Y N 73.198 91.450 100.661 -4.599 -2.041 -1.229 H2 A1IKP 20 A1IKP HA H4 H 0 1 N N N N Y N 72.226 93.498 99.991 -4.239 -1.056 1.526 HA A1IKP 21 A1IKP HB2 H6 H 0 1 N N N N N N 71.469 94.840 102.162 -3.822 0.263 -1.193 HB2 A1IKP 22 A1IKP HB3 H7 H 0 1 N N N N N N 70.384 93.688 101.312 -3.793 1.126 0.363 HB3 A1IKP 23 A1IKP H8 H8 H 0 1 N N N N N N 72.724 92.886 105.881 -0.962 -0.099 -2.507 H8 A1IKP 24 A1IKP H9 H9 H 0 1 N N N N N N 67.561 93.563 106.773 1.778 0.885 2.370 H9 A1IKP 25 A1IKP H10 H10 H 0 1 N N N N N N 66.187 95.329 101.751 4.957 -0.942 2.195 H10 A1IKP 26 A1IKP H11 H11 H 0 1 N N N N N N 69.621 95.823 102.155 5.847 -2.396 -0.462 H11 A1IKP 27 A1IKP OXT O12 O 0 1 N Y N N Y Y 74.890 93.664 101.079 -6.432 0.420 1.301 OXT A1IKP 28 A1IKP HXT H3 H 0 1 N Y N N Y Y 75.569 94.289 101.306 -7.359 0.679 1.208 HXT A1IKP 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IKP CA N SING N N 1 A1IKP CA C SING N N 2 A1IKP CA CB SING N N 3 A1IKP OI1 PT DOUB N N 4 A1IKP C O DOUB N N 5 A1IKP CB OG SING N N 6 A1IKP PT OI2 SING N N 7 A1IKP PT OI3 SING N N 8 A1IKP PT OH SING N N 9 A1IKP OG PD SING N N 10 A1IKP OH PZ SING N N 11 A1IKP OD2 PD DOUB N N 12 A1IKP PD OE SING N N 13 A1IKP PD OD1 SING N N 14 A1IKP OE PZ SING N N 15 A1IKP PZ OZ2 DOUB N N 16 A1IKP PZ OZ1 SING N N 17 A1IKP N H SING N N 18 A1IKP N H2 SING N N 19 A1IKP CA HA SING N N 20 A1IKP CB HB2 SING N N 21 A1IKP CB HB3 SING N N 22 A1IKP OD1 H8 SING N N 23 A1IKP OZ1 H9 SING N N 24 A1IKP OI2 H10 SING N N 25 A1IKP OI3 H11 SING N N 26 A1IKP C OXT SING N N 27 A1IKP OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IKP InChI InChI 1.06 "InChI=1S/C3H10NO12P3/c4-2(3(5)6)1-14-18(10,11)16-19(12,13)15-17(7,8)9/h2H,1,4H2,(H,5,6)(H,10,11)(H,12,13)(H2,7,8,9)/t2-/m0/s1" A1IKP InChIKey InChI 1.06 RRJFBQNVBINENS-REOHCLBHSA-N A1IKP SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C(O)=O" A1IKP SMILES CACTVS 3.385 "N[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C(O)=O" A1IKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](C(=O)O)N)OP(=O)(O)OP(=O)(O)OP(=O)(O)O" A1IKP SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)N)OP(=O)(O)OP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id A1IKP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IKP "Create component" 2024-08-12 PDBE A1IKP "Modify PCM" 2024-09-27 PDBE A1IKP "Initial release" 2025-06-11 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IKP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type Triphosphorylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #