data_A1ILI # _chem_comp.id A1ILI _chem_comp.name "2-[[2-(1-methylpyrazol-4-yl)pyridin-4-yl]carbonylamino]-1-[(3~{R})-1-propanoylazepan-3-yl]-~{N}-prop-2-ynyl-benzimidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H32 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-19 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 552.627 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ILI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GHV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ILI N12 N1 N 0 1 Y N N N N N -54.903 0.212 25.300 -5.977 0.646 0.206 N12 A1ILI 1 A1ILI C13 C1 C 0 1 Y N N N N N -55.668 -0.670 24.657 -5.001 1.515 0.377 C13 A1ILI 2 A1ILI C21 C2 C 0 1 N N R N N N -50.569 1.409 19.080 1.438 1.977 0.646 C21 A1ILI 3 A1ILI C22 C3 C 0 1 N N N N N N -51.558 2.546 19.417 0.763 2.688 -0.552 C22 A1ILI 4 A1ILI C24 C4 C 0 1 N N N N N N -50.756 4.601 18.221 2.096 4.627 -1.041 C24 A1ILI 5 A1ILI C26 C5 C 0 1 N N N N N N -51.151 7.082 18.241 3.672 6.426 -1.697 C26 A1ILI 6 A1ILI C28 C6 C 0 1 N N N N N N -50.319 4.323 20.742 0.069 5.028 0.236 C28 A1ILI 7 A1ILI C02 C7 C 0 1 N N N N N N -53.825 -0.926 21.283 -1.974 -0.705 0.107 C02 A1ILI 8 A1ILI C03 C8 C 0 1 Y N N N N N -54.204 -0.542 22.739 -3.379 -0.236 0.141 C03 A1ILI 9 A1ILI C04 C9 C 0 1 Y N N N N N -53.442 0.391 23.436 -4.437 -1.129 -0.036 C04 A1ILI 10 A1ILI C05 C10 C 0 1 Y N N N N N -53.814 0.751 24.730 -5.742 -0.642 0.004 C05 A1ILI 11 A1ILI C06 C11 C 0 1 Y N N N N N -52.946 1.778 25.494 -6.879 -1.576 -0.183 C06 A1ILI 12 A1ILI C07 C12 C 0 1 Y N N N N N -52.043 2.658 24.925 -8.198 -1.235 -0.270 C07 A1ILI 13 A1ILI C09 C13 C 0 1 N N N N N N -50.491 4.410 25.712 -10.359 -2.465 -0.575 C09 A1ILI 14 A1ILI C11 C14 C 0 1 Y N N N N N -52.920 1.991 26.858 -6.795 -2.977 -0.308 C11 A1ILI 15 A1ILI C14 C15 C 0 1 Y N N N N N -55.352 -1.075 23.369 -3.680 1.115 0.352 C14 A1ILI 16 A1ILI C16 C16 C 0 1 Y N N N N N -52.362 -0.352 19.194 0.345 -0.266 0.248 C16 A1ILI 17 A1ILI C18 C17 C 0 1 Y N N N N N -52.276 -1.150 17.146 2.076 -1.580 0.083 C18 A1ILI 18 A1ILI C19 C18 C 0 1 Y N N N N N -51.336 -0.180 17.225 2.557 -0.279 0.313 C19 A1ILI 19 A1ILI C25 C19 C 0 1 N N N N N N -50.069 5.994 18.187 2.366 6.108 -0.966 C25 A1ILI 20 A1ILI C29 C20 C 0 1 N N N N N N -49.901 3.174 21.651 -0.433 4.440 1.568 C29 A1ILI 21 A1ILI C30 C21 C 0 1 N N N N N N -49.017 2.148 20.962 0.696 3.740 2.283 C30 A1ILI 22 A1ILI C31 C22 C 0 1 N N N N N N -49.767 0.993 20.311 0.707 2.266 1.889 C31 A1ILI 23 A1ILI C32 C23 C 0 1 Y N N N N N -50.532 0.117 16.080 3.925 -0.045 0.395 C32 A1ILI 24 A1ILI C33 C24 C 0 1 Y N N N N N -50.724 -0.597 14.886 4.807 -1.076 0.252 C33 A1ILI 25 A1ILI C34 C25 C 0 1 Y N N N N N -51.709 -1.595 14.812 4.345 -2.379 0.023 C34 A1ILI 26 A1ILI C35 C26 C 0 1 N N N N N N -51.950 -2.434 13.538 5.310 -3.486 -0.130 C35 A1ILI 27 A1ILI C37 C27 C 0 1 N N N N N N -52.960 -0.565 12.004 7.591 -4.342 -0.198 C37 A1ILI 28 A1ILI C38 C28 C 0 1 N N N N N N -53.840 -0.639 10.728 8.961 -3.820 -0.068 C38 A1ILI 29 A1ILI C39 C29 C 0 1 N N N N N N -54.526 -0.727 9.742 10.054 -3.404 0.036 C39 A1ILI 30 A1ILI C41 C30 C 0 1 Y N N N N N -52.475 -1.882 15.932 2.979 -2.631 -0.065 C41 A1ILI 31 A1ILI N08 N2 N 0 1 Y N N N N N -51.509 3.355 25.892 -8.903 -2.370 -0.436 N08 A1ILI 32 A1ILI N10 N3 N 0 1 Y N N N N N -52.031 2.966 27.100 -8.006 -3.444 -0.457 N10 A1ILI 33 A1ILI N15 N4 N 0 1 N N N N N N -52.788 -0.113 20.624 -0.966 0.172 0.280 N15 A1ILI 34 A1ILI N17 N5 N 0 1 Y N N N N N -52.916 -1.250 18.367 0.719 -1.505 0.052 N17 A1ILI 35 A1ILI N20 N6 N 0 1 Y N N N N N -51.397 0.315 18.529 1.443 0.531 0.411 N20 A1ILI 36 A1ILI N23 N7 N 0 1 N N N N N N -50.874 3.834 19.487 0.993 4.113 -0.462 N23 A1ILI 37 A1ILI N36 N8 N 0 1 N N N N N N -52.516 -1.941 12.288 6.633 -3.243 -0.047 N36 A1ILI 38 A1ILI O01 O1 O 0 1 N N N N N N -54.376 -1.811 20.727 -1.731 -1.881 -0.078 O01 A1ILI 39 A1ILI O27 O2 O 0 1 N N N N N N -51.233 4.148 17.237 2.872 3.898 -1.621 O27 A1ILI 40 A1ILI O40 O3 O 0 1 N N N N N N -51.654 -3.587 13.581 4.911 -4.617 -0.329 O40 A1ILI 41 A1ILI H131 H1 H 0 0 N N N N N N -56.543 -1.074 25.144 -5.239 2.556 0.540 H131 A1ILI 42 A1ILI H211 H2 H 0 0 N N N N N N -49.873 1.767 18.307 2.465 2.330 0.741 H211 A1ILI 43 A1ILI H222 H3 H 0 0 N N N N N N -52.332 2.592 18.637 1.185 2.311 -1.484 H222 A1ILI 44 A1ILI H221 H4 H 0 0 N N N N N N -52.029 2.336 20.389 -0.309 2.492 -0.534 H221 A1ILI 45 A1ILI H261 H5 H 0 0 N N N N N N -50.676 8.074 18.217 4.492 5.884 -1.227 H261 A1ILI 46 A1ILI H263 H6 H 0 0 N N N N N N -51.821 6.976 17.375 3.587 6.125 -2.741 H263 A1ILI 47 A1ILI H262 H7 H 0 0 N N N N N N -51.732 6.976 19.169 3.867 7.497 -1.643 H262 A1ILI 48 A1ILI H282 H8 H 0 0 N N N N N N -49.439 4.946 20.525 -0.788 5.226 -0.408 H282 A1ILI 49 A1ILI H281 H9 H 0 0 N N N N N N -51.079 4.929 21.257 0.585 5.966 0.438 H281 A1ILI 50 A1ILI H041 H10 H 0 0 N N N N N N -52.569 0.833 22.978 -4.247 -2.179 -0.201 H041 A1ILI 51 A1ILI H071 H11 H 0 0 N N N N N N -51.820 2.752 23.872 -8.603 -0.235 -0.215 H071 A1ILI 52 A1ILI H091 H12 H 0 0 N N N N N N -50.221 4.830 26.692 -10.628 -2.395 -1.629 H091 A1ILI 53 A1ILI H092 H13 H 0 0 N N N N N N -49.596 3.979 25.238 -10.701 -3.419 -0.175 H092 A1ILI 54 A1ILI H093 H14 H 0 0 N N N N N N -50.898 5.206 25.071 -10.830 -1.650 -0.025 H093 A1ILI 55 A1ILI H111 H15 H 0 0 N N N N N N -53.509 1.467 27.596 -5.887 -3.563 -0.286 H111 A1ILI 56 A1ILI H141 H16 H 0 0 N N N N N N -55.976 -1.790 22.853 -2.888 1.836 0.492 H141 A1ILI 57 A1ILI H252 H17 H 0 0 N N N N N N -49.488 6.097 17.259 1.545 6.651 -1.435 H252 A1ILI 58 A1ILI H251 H18 H 0 0 N N N N N N -49.398 6.096 19.053 2.451 6.410 0.078 H251 A1ILI 59 A1ILI H292 H19 H 0 0 N N N N N N -49.350 3.590 22.507 -0.816 5.244 2.196 H292 A1ILI 60 A1ILI H291 H20 H 0 0 N N N N N N -50.808 2.667 22.011 -1.232 3.725 1.369 H291 A1ILI 61 A1ILI H302 H21 H 0 0 N N N N N N -48.439 2.664 20.181 1.644 4.198 2.003 H302 A1ILI 62 A1ILI H301 H22 H 0 0 N N N N N N -48.329 1.730 21.712 0.553 3.827 3.361 H301 A1ILI 63 A1ILI H312 H23 H 0 0 N N N N N N -49.036 0.228 20.009 -0.323 1.931 1.771 H312 A1ILI 64 A1ILI H311 H24 H 0 0 N N N N N N -50.460 0.566 21.051 1.162 1.695 2.699 H311 A1ILI 65 A1ILI H321 H25 H 0 0 N N N N N N -49.779 0.889 16.134 4.290 0.956 0.571 H321 A1ILI 66 A1ILI H331 H26 H 0 0 N N N N N N -50.113 -0.378 14.023 5.869 -0.887 0.317 H331 A1ILI 67 A1ILI H371 H27 H 0 0 N N N N N N -53.547 -0.174 12.848 7.468 -4.799 -1.180 H371 A1ILI 68 A1ILI H372 H28 H 0 0 N N N N N N -52.091 0.086 11.829 7.411 -5.089 0.575 H372 A1ILI 69 A1ILI H391 H29 H 0 0 N N N N N N -55.130 -0.804 8.874 11.031 -3.031 0.128 H391 A1ILI 70 A1ILI H411 H30 H 0 0 N N N N N N -53.223 -2.660 15.888 2.622 -3.635 -0.245 H411 A1ILI 71 A1ILI H151 H31 H 0 0 N N N N N N -52.351 0.623 21.141 -1.160 1.111 0.427 H151 A1ILI 72 A1ILI H361 H32 H 0 0 N N N N N N -52.613 -2.605 11.547 6.952 -2.341 0.112 H361 A1ILI 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ILI C02 O01 DOUB N N 1 A1ILI C04 C03 DOUB Y N 2 A1ILI C05 C04 SING Y N 3 A1ILI C07 C06 DOUB Y N 4 A1ILI N08 C07 SING Y N 5 A1ILI C09 N08 SING N N 6 A1ILI N10 N08 SING Y N 7 A1ILI C11 N10 DOUB Y N 8 A1ILI C06 C05 SING N N 9 A1ILI N12 C05 DOUB Y N 10 A1ILI C13 N12 SING Y N 11 A1ILI C14 C13 DOUB Y N 12 A1ILI C03 C02 SING N N 13 A1ILI N15 C02 SING N N 14 A1ILI C16 N15 SING N N 15 A1ILI N17 C16 DOUB Y N 16 A1ILI C18 N17 SING Y N 17 A1ILI C19 C18 DOUB Y N 18 A1ILI C21 N20 SING N N 19 A1ILI C22 C21 SING N N 20 A1ILI N23 C22 SING N N 21 A1ILI C26 C25 SING N N 22 A1ILI C25 C24 SING N N 23 A1ILI O27 C24 DOUB N N 24 A1ILI C24 N23 SING N N 25 A1ILI C28 N23 SING N N 26 A1ILI C29 C28 SING N N 27 A1ILI C30 C29 SING N N 28 A1ILI C31 C30 SING N N 29 A1ILI N20 C19 SING Y N 30 A1ILI C32 C19 SING Y N 31 A1ILI C33 C32 DOUB Y N 32 A1ILI C34 C33 SING Y N 33 A1ILI C37 N36 SING N N 34 A1ILI C38 C37 SING N N 35 A1ILI C39 C38 TRIP N N 36 A1ILI N36 C35 SING N N 37 A1ILI O40 C35 DOUB N N 38 A1ILI C35 C34 SING N N 39 A1ILI C41 C34 DOUB Y N 40 A1ILI C03 C14 SING Y N 41 A1ILI C06 C11 SING Y N 42 A1ILI C16 N20 SING Y N 43 A1ILI C18 C41 SING Y N 44 A1ILI C21 C31 SING N N 45 A1ILI C13 H131 SING N N 46 A1ILI C21 H211 SING N N 47 A1ILI C22 H222 SING N N 48 A1ILI C22 H221 SING N N 49 A1ILI C26 H261 SING N N 50 A1ILI C26 H263 SING N N 51 A1ILI C26 H262 SING N N 52 A1ILI C28 H282 SING N N 53 A1ILI C28 H281 SING N N 54 A1ILI C04 H041 SING N N 55 A1ILI C07 H071 SING N N 56 A1ILI C09 H091 SING N N 57 A1ILI C09 H092 SING N N 58 A1ILI C09 H093 SING N N 59 A1ILI C11 H111 SING N N 60 A1ILI C14 H141 SING N N 61 A1ILI C25 H252 SING N N 62 A1ILI C25 H251 SING N N 63 A1ILI C29 H292 SING N N 64 A1ILI C29 H291 SING N N 65 A1ILI C30 H302 SING N N 66 A1ILI C30 H301 SING N N 67 A1ILI C31 H312 SING N N 68 A1ILI C31 H311 SING N N 69 A1ILI C32 H321 SING N N 70 A1ILI C33 H331 SING N N 71 A1ILI C37 H371 SING N N 72 A1ILI C37 H372 SING N N 73 A1ILI C39 H391 SING N N 74 A1ILI C41 H411 SING N N 75 A1ILI N15 H151 SING N N 76 A1ILI N36 H361 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ILI InChI InChI 1.06 "InChI=1S/C30H32N8O3/c1-4-12-32-28(40)20-9-10-26-25(16-20)34-30(38(26)23-8-6-7-14-37(19-23)27(39)5-2)35-29(41)21-11-13-31-24(15-21)22-17-33-36(3)18-22/h1,9-11,13,15-18,23H,5-8,12,14,19H2,2-3H3,(H,32,40)(H,34,35,41)" A1ILI InChIKey InChI 1.06 YMKWVJVWWTXZDF-UHFFFAOYSA-N A1ILI SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCCC[C@H](C1)n2c(NC(=O)c3ccnc(c3)c4cnn(C)c4)nc5cc(ccc25)C(=O)NCC#C" A1ILI SMILES CACTVS 3.385 "CCC(=O)N1CCCC[CH](C1)n2c(NC(=O)c3ccnc(c3)c4cnn(C)c4)nc5cc(ccc25)C(=O)NCC#C" A1ILI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC[C@H](C1)n2c3ccc(cc3nc2NC(=O)c4ccnc(c4)c5cnn(c5)C)C(=O)NCC#C" A1ILI SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCCC(C1)n2c3ccc(cc3nc2NC(=O)c4ccnc(c4)c5cnn(c5)C)C(=O)NCC#C" # _pdbx_chem_comp_identifier.comp_id A1ILI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[2-(1-methylpyrazol-4-yl)pyridin-4-yl]carbonylamino]-1-[(3~{R})-1-propanoylazepan-3-yl]-~{N}-prop-2-ynyl-benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ILI "Create component" 2024-08-19 PDBE A1ILI "Modify PCM" 2024-09-27 PDBE A1ILI "Initial release" 2026-03-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ILI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C26 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #