data_A1ILJ # _chem_comp.id A1ILJ _chem_comp.name "(~{N}~{E})-2-(1-methylpyrazol-4-yl)-~{N}-[3-[(3~{R})-1-propanoylazepan-3-yl]-1~{H}-benzimidazol-2-ylidene]pyridine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-19 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ILJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GHS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ILJ C10 C1 C 0 1 Y N N N N N -51.174 0.329 16.567 -4.400 -2.707 -0.376 C10 A1ILJ 1 A1ILJ N12 N1 N 0 1 N N N N N N -51.875 0.592 19.088 -2.353 -1.190 -0.306 N12 A1ILJ 2 A1ILJ C13 C2 C 0 1 N N R N N N -50.977 1.656 19.543 -2.926 0.126 -0.602 C13 A1ILJ 3 A1ILJ C17 C3 C 0 1 N N N N N N -50.769 6.120 18.248 -5.550 3.546 0.791 C17 A1ILJ 4 A1ILJ C20 C4 C 0 1 N N N N N N -50.503 4.661 20.830 -2.948 3.478 -0.265 C20 A1ILJ 5 A1ILJ C21 C5 C 0 1 N N N N N N -50.097 3.591 21.844 -2.176 3.119 -1.547 C21 A1ILJ 6 A1ILJ C22 C6 C 0 1 N N N N N N -49.266 2.466 21.226 -2.878 2.003 -2.280 C22 A1ILJ 7 A1ILJ C24 C7 C 0 1 Y N N N N N -54.529 -0.312 23.143 2.304 0.051 -0.031 C24 A1ILJ 8 A1ILJ C26 C8 C 0 1 Y N N N N N -55.935 -0.417 25.067 3.078 2.295 -0.371 C26 A1ILJ 9 A1ILJ C28 C9 C 0 1 Y N N N N N -54.162 1.062 25.078 4.634 0.627 0.001 C28 A1ILJ 10 A1ILJ C02 C10 C 0 1 N N N N N N -54.191 -0.648 21.704 1.206 -0.941 0.080 C02 A1ILJ 11 A1ILJ C04 C11 C 0 1 N N N N N N -52.893 -0.064 19.853 -1.041 -1.451 -0.065 C04 A1ILJ 12 A1ILJ C06 C12 C 0 1 Y N N N N N -52.935 -0.930 17.678 -2.133 -3.389 0.077 C06 A1ILJ 13 A1ILJ C07 C13 C 0 1 Y N N N N N -53.191 -1.626 16.489 -2.561 -4.701 0.221 C07 A1ILJ 14 A1ILJ C08 C14 C 0 1 Y N N N N N -52.444 -1.349 15.339 -3.897 -5.010 0.067 C08 A1ILJ 15 A1ILJ C09 C15 C 0 1 Y N N N N N -51.431 -0.366 15.381 -4.814 -4.016 -0.231 C09 A1ILJ 16 A1ILJ C11 C16 C 0 1 Y N N N N N -51.926 0.048 17.721 -3.058 -2.386 -0.223 C11 A1ILJ 17 A1ILJ C14 C17 C 0 1 N N N N N N -51.915 2.810 19.891 -2.670 1.077 0.592 C14 A1ILJ 18 A1ILJ C16 C18 C 0 1 N N N N N N -51.411 4.758 18.470 -4.704 2.308 0.941 C16 A1ILJ 19 A1ILJ C18 C19 C 0 1 N N N N N N -51.803 7.217 18.505 -6.911 3.316 1.452 C18 A1ILJ 20 A1ILJ C23 C20 C 0 1 N N N N N N -50.100 1.277 20.739 -2.308 0.662 -1.824 C23 A1ILJ 21 A1ILJ C25 C21 C 0 1 Y N N N N N -55.643 -0.840 23.782 2.030 1.401 -0.275 C25 A1ILJ 22 A1ILJ C29 C22 C 0 1 Y N N N N N -53.303 2.120 25.780 6.057 0.232 0.143 C29 A1ILJ 23 A1ILJ C30 C23 C 0 1 Y N N N N N -52.449 3.008 25.170 7.131 1.074 0.154 C30 A1ILJ 24 A1ILJ C32 C24 C 0 1 N N N N N N -50.925 4.798 25.894 9.614 0.818 0.366 C32 A1ILJ 25 A1ILJ C34 C25 C 0 1 Y N N N N N -53.228 2.354 27.146 6.545 -1.081 0.298 C34 A1ILJ 26 A1ILJ C35 C26 C 0 1 Y N N N N N -53.815 0.678 23.797 3.636 -0.337 0.112 C35 A1ILJ 27 A1ILJ N03 N2 N 0 1 N N N N N N -53.161 0.135 21.059 -0.065 -0.549 -0.060 N03 A1ILJ 28 A1ILJ N05 N3 N 0 1 N N N N N N -53.553 -1.012 19.011 -0.886 -2.781 0.170 N05 A1ILJ 29 A1ILJ N15 N4 N 0 1 N N N N N N -51.268 4.088 19.739 -3.456 2.280 0.432 N15 A1ILJ 30 A1ILJ N27 N5 N 0 1 Y N N N N N -55.200 0.500 25.674 4.326 1.895 -0.237 N27 A1ILJ 31 A1ILJ N31 N6 N 0 1 Y N N N N N -51.894 3.736 26.113 8.238 0.320 0.303 N31 A1ILJ 32 A1ILJ N33 N7 N 0 1 Y N N N N N -52.359 3.352 27.342 7.847 -1.021 0.391 N33 A1ILJ 33 A1ILJ O01 O1 O 0 1 N N N N N N -54.824 -1.435 21.099 1.462 -2.112 0.298 O01 A1ILJ 34 A1ILJ O19 O2 O 0 1 N N N N N N -52.048 4.247 17.613 -5.146 1.338 1.518 O19 A1ILJ 35 A1ILJ H101 H1 H 0 0 N N N N N N -50.399 1.081 16.596 -5.117 -1.935 -0.612 H101 A1ILJ 36 A1ILJ H131 H2 H 0 0 N N N N N N -50.326 1.968 18.713 -4.001 0.025 -0.756 H131 A1ILJ 37 A1ILJ H172 H3 H 0 0 N N N N N N -50.408 6.191 17.211 -5.051 4.388 1.272 H172 A1ILJ 38 A1ILJ H171 H4 H 0 0 N N N N N N -49.923 6.244 18.940 -5.692 3.764 -0.267 H171 A1ILJ 39 A1ILJ H202 H5 H 0 0 N N N N N N -49.596 5.132 20.423 -2.285 4.023 0.407 H202 A1ILJ 40 A1ILJ H201 H6 H 0 0 N N N N N N -51.115 5.421 21.337 -3.790 4.118 -0.528 H201 A1ILJ 41 A1ILJ H212 H7 H 0 0 N N N N N N -49.505 4.068 22.639 -2.120 3.996 -2.193 H212 A1ILJ 42 A1ILJ H211 H8 H 0 0 N N N N N N -51.009 3.155 22.278 -1.168 2.799 -1.284 H211 A1ILJ 43 A1ILJ H222 H9 H 0 0 N N N N N N -48.712 2.875 20.368 -3.945 2.038 -2.061 H222 A1ILJ 44 A1ILJ H221 H10 H 0 0 N N N N N N -48.555 2.104 21.983 -2.723 2.118 -3.353 H221 A1ILJ 45 A1ILJ H261 H11 H 0 0 N N N N N N -56.781 -0.845 25.585 2.871 3.338 -0.560 H261 A1ILJ 46 A1ILJ H071 H12 H 0 0 N N N N N N -53.966 -2.377 16.460 -1.849 -5.479 0.453 H071 A1ILJ 47 A1ILJ H081 H13 H 0 0 N N N N N N -52.641 -1.885 14.422 -4.230 -6.031 0.180 H081 A1ILJ 48 A1ILJ H091 H14 H 0 0 N N N N N N -50.853 -0.150 14.495 -5.858 -4.265 -0.350 H091 A1ILJ 49 A1ILJ H142 H15 H 0 0 N N N N N N -52.789 2.772 19.225 -2.953 0.579 1.520 H142 A1ILJ 50 A1ILJ H141 H16 H 0 0 N N N N N N -52.244 2.699 20.935 -1.612 1.337 0.628 H141 A1ILJ 51 A1ILJ H183 H17 H 0 0 N N N N N N -51.341 8.202 18.345 -6.769 3.099 2.510 H183 A1ILJ 52 A1ILJ H182 H18 H 0 0 N N N N N N -52.649 7.092 17.813 -7.523 4.212 1.344 H182 A1ILJ 53 A1ILJ H181 H19 H 0 0 N N N N N N -52.163 7.145 19.542 -7.410 2.475 0.971 H181 A1ILJ 54 A1ILJ H232 H20 H 0 0 N N N N N N -49.422 0.464 20.441 -1.240 0.782 -1.648 H232 A1ILJ 55 A1ILJ H231 H21 H 0 0 N N N N N N -50.746 0.934 21.561 -2.444 -0.062 -2.628 H231 A1ILJ 56 A1ILJ H251 H22 H 0 0 N N N N N N -56.269 -1.567 23.286 1.010 1.740 -0.388 H251 A1ILJ 57 A1ILJ H301 H23 H 0 0 N N N N N N -52.267 3.092 24.109 7.100 2.149 0.061 H301 A1ILJ 58 A1ILJ H321 H24 H 0 0 N N N N N N -50.633 5.234 26.861 9.877 1.029 1.403 H321 A1ILJ 59 A1ILJ H322 H25 H 0 0 N N N N N N -50.036 4.386 25.394 10.292 0.065 -0.035 H322 A1ILJ 60 A1ILJ H323 H26 H 0 0 N N N N N N -51.373 5.578 25.261 9.697 1.732 -0.222 H323 A1ILJ 61 A1ILJ H341 H27 H 0 0 N N N N N N -53.774 1.825 27.913 5.947 -1.980 0.334 H341 A1ILJ 62 A1ILJ H351 H28 H 0 0 N N N N N N -52.981 1.153 23.302 3.889 -1.369 0.306 H351 A1ILJ 63 A1ILJ H051 H29 H 0 0 N N N N N N -54.300 -1.621 19.279 -0.049 -3.230 0.368 H051 A1ILJ 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ILJ C02 O01 DOUB N N 1 A1ILJ C04 N03 DOUB N N 2 A1ILJ N05 C04 SING N N 3 A1ILJ C06 N05 SING N N 4 A1ILJ C08 C07 DOUB Y N 5 A1ILJ C09 C08 SING Y N 6 A1ILJ C10 C09 DOUB Y N 7 A1ILJ C07 C06 SING Y N 8 A1ILJ C11 C06 DOUB Y N 9 A1ILJ N12 C11 SING N N 10 A1ILJ C13 N12 SING N N 11 A1ILJ C14 C13 SING N N 12 A1ILJ N15 C14 SING N N 13 A1ILJ C18 C17 SING N N 14 A1ILJ C17 C16 SING N N 15 A1ILJ O19 C16 DOUB N N 16 A1ILJ C16 N15 SING N N 17 A1ILJ C20 N15 SING N N 18 A1ILJ C21 C20 SING N N 19 A1ILJ C22 C21 SING N N 20 A1ILJ C23 C22 SING N N 21 A1ILJ N03 C02 SING N N 22 A1ILJ C24 C02 SING N N 23 A1ILJ C25 C24 DOUB Y N 24 A1ILJ C26 C25 SING Y N 25 A1ILJ N27 C26 DOUB Y N 26 A1ILJ C28 N27 SING Y N 27 A1ILJ C30 C29 DOUB Y N 28 A1ILJ N31 C30 SING Y N 29 A1ILJ C32 N31 SING N N 30 A1ILJ N33 N31 SING Y N 31 A1ILJ C34 N33 DOUB Y N 32 A1ILJ C29 C28 SING N N 33 A1ILJ C35 C28 DOUB Y N 34 A1ILJ C04 N12 SING N N 35 A1ILJ C10 C11 SING Y N 36 A1ILJ C13 C23 SING N N 37 A1ILJ C24 C35 SING Y N 38 A1ILJ C29 C34 SING Y N 39 A1ILJ C10 H101 SING N N 40 A1ILJ C13 H131 SING N N 41 A1ILJ C17 H172 SING N N 42 A1ILJ C17 H171 SING N N 43 A1ILJ C20 H202 SING N N 44 A1ILJ C20 H201 SING N N 45 A1ILJ C21 H212 SING N N 46 A1ILJ C21 H211 SING N N 47 A1ILJ C22 H222 SING N N 48 A1ILJ C22 H221 SING N N 49 A1ILJ C26 H261 SING N N 50 A1ILJ C07 H071 SING N N 51 A1ILJ C08 H081 SING N N 52 A1ILJ C09 H091 SING N N 53 A1ILJ C14 H142 SING N N 54 A1ILJ C14 H141 SING N N 55 A1ILJ C18 H183 SING N N 56 A1ILJ C18 H182 SING N N 57 A1ILJ C18 H181 SING N N 58 A1ILJ C23 H232 SING N N 59 A1ILJ C23 H231 SING N N 60 A1ILJ C25 H251 SING N N 61 A1ILJ C30 H301 SING N N 62 A1ILJ C32 H321 SING N N 63 A1ILJ C32 H322 SING N N 64 A1ILJ C32 H323 SING N N 65 A1ILJ C34 H341 SING N N 66 A1ILJ C35 H351 SING N N 67 A1ILJ N05 H051 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ILJ InChI InChI 1.06 "InChI=1S/C26H29N7O2/c1-3-24(34)32-13-7-6-8-20(17-32)33-23-10-5-4-9-21(23)29-26(33)30-25(35)18-11-12-27-22(14-18)19-15-28-31(2)16-19/h4-5,9-12,14-16,20H,3,6-8,13,17H2,1-2H3,(H,29,30,35)" A1ILJ InChIKey InChI 1.06 WNKCEBJEQFRXBN-UHFFFAOYSA-N A1ILJ SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCCC[C@H](C1)N2C(Nc3ccccc23)=NC(=O)c4ccnc(c4)c5cnn(C)c5" A1ILJ SMILES CACTVS 3.385 "CCC(=O)N1CCCC[CH](C1)N2C(Nc3ccccc23)=NC(=O)c4ccnc(c4)c5cnn(C)c5" A1ILJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC[C@H](C1)N\2c3ccccc3N/C2=N\C(=O)c4ccnc(c4)c5cnn(c5)C" A1ILJ SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCCC(C1)N2c3ccccc3NC2=NC(=O)c4ccnc(c4)c5cnn(c5)C" # _pdbx_chem_comp_identifier.comp_id A1ILJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{N}~{E})-2-(1-methylpyrazol-4-yl)-~{N}-[3-[(3~{R})-1-propanoylazepan-3-yl]-1~{H}-benzimidazol-2-ylidene]pyridine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ILJ "Create component" 2024-08-19 PDBE A1ILJ "Modify PCM" 2024-09-27 PDBE A1ILJ "Initial release" 2026-03-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ILJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #