data_A1ILK # _chem_comp.id A1ILK _chem_comp.name "(~{N}~{E})-2-(1,3-dimethylpyrazol-4-yl)-~{N}-[3-[(3~{R})-1-propanoylazepan-3-yl]-1~{H}-benzimidazol-2-ylidene]pyridine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-19 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 485.581 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ILK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GHU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ILK C10 C1 C 0 1 Y N N N N N -50.756 0.060 16.391 -4.537 -2.764 -0.418 C10 A1ILK 1 A1ILK N12 N1 N 0 1 N N N N N N -51.578 0.271 18.881 -2.515 -1.215 -0.326 N12 A1ILK 2 A1ILK C13 C2 C 0 1 N N R N N N -50.693 1.324 19.409 -3.109 0.096 -0.600 C13 A1ILK 3 A1ILK C17 C3 C 0 1 N N N N N N -50.130 5.790 18.249 -5.786 3.451 0.851 C17 A1ILK 4 A1ILK C20 C4 C 0 1 N N N N N N -50.389 4.299 20.912 -3.185 3.441 -0.208 C20 A1ILK 5 A1ILK C21 C5 C 0 1 N N N N N N -50.035 3.174 21.884 -2.408 3.116 -1.497 C21 A1ILK 6 A1ILK C22 C6 C 0 1 N N N N N N -49.148 2.095 21.262 -3.092 2.000 -2.247 C22 A1ILK 7 A1ILK C24 C7 C 0 1 Y N N N N N -54.374 -0.619 22.925 2.122 0.096 -0.034 C24 A1ILK 8 A1ILK C26 C8 C 0 1 Y N N N N N -55.820 -0.692 24.830 2.859 2.357 -0.339 C26 A1ILK 9 A1ILK C28 C9 C 0 1 Y N N N N N -53.944 0.658 24.938 4.443 0.709 0.005 C28 A1ILK 10 A1ILK C02 C10 C 0 1 N N N N N N -54.023 -0.969 21.452 1.040 -0.915 0.062 C02 A1ILK 11 A1ILK C04 C11 C 0 1 N N N N N N -52.640 -0.400 19.594 -1.198 -1.459 -0.090 C04 A1ILK 12 A1ILK C06 C12 C 0 1 Y N N N N N -52.577 -1.222 17.387 -2.260 -3.416 0.022 C06 A1ILK 13 A1ILK C07 C13 C 0 1 Y N N N N N -52.777 -1.892 16.166 -2.666 -4.737 0.146 C07 A1ILK 14 A1ILK C08 C14 C 0 1 Y N N N N N -51.973 -1.591 15.064 -3.997 -5.065 -0.013 C08 A1ILK 15 A1ILK C09 C15 C 0 1 Y N N N N N -50.956 -0.611 15.175 -4.930 -4.081 -0.294 C09 A1ILK 16 A1ILK C11 C16 C 0 1 Y N N N N N -51.566 -0.245 17.498 -3.200 -2.424 -0.261 C11 A1ILK 17 A1ILK C14 C17 C 0 1 N N N N N N -51.638 2.483 19.739 -2.867 1.032 0.610 C14 A1ILK 18 A1ILK C16 C18 C 0 1 N N N N N N -50.840 4.425 18.383 -4.920 2.224 0.979 C16 A1ILK 19 A1ILK C18 C19 C 0 1 N N N N N N -51.210 6.889 18.284 -7.142 3.189 1.508 C18 A1ILK 20 A1ILK C23 C20 C 0 1 N N N N N N -49.905 0.912 20.653 -2.501 0.662 -1.814 C23 A1ILK 21 A1ILK C25 C21 C 0 1 Y N N N N N -55.526 -1.099 23.528 1.826 1.445 -0.256 C25 A1ILK 22 A1ILK C29 C22 C 0 1 Y N N N N N -53.025 1.653 25.704 5.872 0.334 0.140 C29 A1ILK 23 A1ILK C30 C23 C 0 1 Y N N N N N -52.236 2.608 25.106 6.359 -0.923 0.358 C30 A1ILK 24 A1ILK C32 C24 C 0 1 N N N N N N -50.660 4.355 25.823 8.627 -1.949 0.638 C32 A1ILK 25 A1ILK C34 C25 C 0 1 Y N N N N N -52.828 1.768 27.086 6.974 1.209 0.061 C34 A1ILK 26 A1ILK C35 C26 C 0 1 N N N N N N -53.482 0.930 28.180 6.908 2.695 -0.177 C35 A1ILK 27 A1ILK C36 C27 C 0 1 Y N N N N N -53.593 0.297 23.636 3.460 -0.273 0.101 C36 A1ILK 28 A1ILK N03 N2 N 0 1 N N N N N N -52.956 -0.201 20.826 -0.237 -0.542 -0.071 N03 A1ILK 29 A1ILK N05 N3 N 0 1 N N N N N N -53.264 -1.333 18.696 -1.021 -2.790 0.124 N05 A1ILK 30 A1ILK N15 N4 N 0 1 N N N N N N -50.943 3.756 19.689 -3.672 2.224 0.470 N15 A1ILK 31 A1ILK N27 N5 N 0 1 Y N N N N N -55.033 0.156 25.489 4.114 1.975 -0.212 N27 A1ILK 32 A1ILK N31 N6 N 0 1 Y N N N N N -51.599 3.262 26.056 7.702 -0.834 0.418 N31 A1ILK 33 A1ILK N33 N7 N 0 1 Y N N N N N -51.947 2.762 27.288 8.062 0.506 0.230 N33 A1ILK 34 A1ILK O01 O1 O 0 1 N N N N N N -54.643 -1.749 20.839 1.315 -2.085 0.261 O01 A1ILK 35 A1ILK O19 O2 O 0 1 N N N N N N -51.331 3.904 17.440 -5.346 1.238 1.541 O19 A1ILK 36 A1ILK H101 H1 H 0 0 N N N N N N -49.982 0.808 16.476 -5.267 -2.000 -0.641 H101 A1ILK 37 A1ILK H131 H2 H 0 0 N N N N N N -49.989 1.646 18.628 -4.182 -0.020 -0.754 H131 A1ILK 38 A1ILK H172 H3 H 0 0 N N N N N N -49.582 5.835 17.296 -5.300 4.292 1.344 H172 A1ILK 39 A1ILK H171 H4 H 0 0 N N N N N N -49.427 5.930 19.084 -5.932 3.684 -0.204 H171 A1ILK 40 A1ILK H202 H5 H 0 0 N N N N N N -49.480 4.872 20.675 -2.530 3.987 0.471 H202 A1ILK 41 A1ILK H201 H6 H 0 0 N N N N N N -51.129 4.963 21.381 -4.037 4.072 -0.460 H201 A1ILK 42 A1ILK H212 H7 H 0 0 N N N N N N -49.505 3.609 22.744 -2.367 4.003 -2.128 H212 A1ILK 43 A1ILK H211 H8 H 0 0 N N N N N N -50.968 2.704 22.228 -1.395 2.807 -1.240 H211 A1ILK 44 A1ILK H222 H9 H 0 0 N N N N N N -48.547 2.562 20.468 -4.160 2.014 -2.026 H222 A1ILK 45 A1ILK H221 H10 H 0 0 N N N N N N -48.481 1.707 22.046 -2.941 2.135 -3.318 H221 A1ILK 46 A1ILK H261 H11 H 0 0 N N N N N N -56.707 -1.074 25.314 2.636 3.400 -0.510 H261 A1ILK 47 A1ILK H071 H12 H 0 0 N N N N N N -53.552 -2.639 16.081 -1.941 -5.508 0.364 H071 A1ILK 48 A1ILK H081 H13 H 0 0 N N N N N N -52.127 -2.106 14.127 -4.313 -6.093 0.084 H081 A1ILK 49 A1ILK H091 H14 H 0 0 N N N N N N -50.334 -0.380 14.323 -5.970 -4.345 -0.416 H091 A1ILK 50 A1ILK H142 H15 H 0 0 N N N N N N -52.461 2.494 19.009 -3.141 0.515 1.530 H142 A1ILK 51 A1ILK H141 H16 H 0 0 N N N N N N -52.047 2.336 20.750 -1.813 1.309 0.649 H141 A1ILK 52 A1ILK H183 H17 H 0 0 N N N N N N -50.733 7.876 18.190 -6.996 2.956 2.563 H183 A1ILK 53 A1ILK H182 H18 H 0 0 N N N N N N -51.911 6.740 17.450 -7.769 4.076 1.416 H182 A1ILK 54 A1ILK H181 H19 H 0 0 N N N N N N -51.757 6.835 19.237 -7.629 2.347 1.015 H181 A1ILK 55 A1ILK H232 H20 H 0 0 N N N N N N -49.182 0.131 20.374 -1.434 0.796 -1.636 H232 A1ILK 56 A1ILK H231 H21 H 0 0 N N N N N N -50.605 0.513 21.402 -2.626 -0.052 -2.628 H231 A1ILK 57 A1ILK H251 H22 H 0 0 N N N N N N -56.183 -1.775 23.001 0.801 1.769 -0.362 H251 A1ILK 58 A1ILK H301 H23 H 0 0 N N N N N N -52.153 2.790 24.045 5.774 -1.824 0.464 H301 A1ILK 59 A1ILK H322 H24 H 0 0 N N N N N N -50.273 4.718 26.786 8.912 -2.380 -0.322 H322 A1ILK 60 A1ILK H321 H25 H 0 0 N N N N N N -49.825 3.995 25.204 9.517 -1.586 1.152 H321 A1ILK 61 A1ILK H323 H26 H 0 0 N N N N N N -51.175 5.176 25.302 8.140 -2.710 1.248 H323 A1ILK 62 A1ILK H352 H27 H 0 0 N N N N N N -53.121 1.264 29.164 6.838 3.214 0.779 H352 A1ILK 63 A1ILK H351 H28 H 0 0 N N N N N N -54.574 1.050 28.130 7.807 3.019 -0.701 H351 A1ILK 64 A1ILK H353 H29 H 0 0 N N N N N N -53.222 -0.129 28.035 6.031 2.928 -0.781 H353 A1ILK 65 A1ILK H361 H30 H 0 0 N N N N N N -52.715 0.727 23.176 3.730 -1.304 0.278 H361 A1ILK 66 A1ILK H051 H31 H 0 0 N N N N N N -54.024 -1.946 18.915 -0.177 -3.228 0.314 H051 A1ILK 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ILK C02 O01 DOUB N N 1 A1ILK C04 N03 DOUB N N 2 A1ILK N05 C04 SING N N 3 A1ILK C06 N05 SING N N 4 A1ILK C08 C07 DOUB Y N 5 A1ILK C09 C08 SING Y N 6 A1ILK C10 C09 DOUB Y N 7 A1ILK C07 C06 SING Y N 8 A1ILK C11 C06 DOUB Y N 9 A1ILK N12 C11 SING N N 10 A1ILK C13 N12 SING N N 11 A1ILK C14 C13 SING N N 12 A1ILK N15 C14 SING N N 13 A1ILK C18 C17 SING N N 14 A1ILK C17 C16 SING N N 15 A1ILK O19 C16 DOUB N N 16 A1ILK C16 N15 SING N N 17 A1ILK C20 N15 SING N N 18 A1ILK C21 C20 SING N N 19 A1ILK C22 C21 SING N N 20 A1ILK C23 C22 SING N N 21 A1ILK N03 C02 SING N N 22 A1ILK C24 C02 SING N N 23 A1ILK C25 C24 DOUB Y N 24 A1ILK C26 C25 SING Y N 25 A1ILK N27 C26 DOUB Y N 26 A1ILK C28 N27 SING Y N 27 A1ILK C30 C29 DOUB Y N 28 A1ILK N31 C30 SING Y N 29 A1ILK C32 N31 SING N N 30 A1ILK N33 N31 SING Y N 31 A1ILK C34 N33 DOUB Y N 32 A1ILK C35 C34 SING N N 33 A1ILK C29 C28 SING N N 34 A1ILK C36 C28 DOUB Y N 35 A1ILK C04 N12 SING N N 36 A1ILK C10 C11 SING Y N 37 A1ILK C13 C23 SING N N 38 A1ILK C24 C36 SING Y N 39 A1ILK C29 C34 SING Y N 40 A1ILK C10 H101 SING N N 41 A1ILK C13 H131 SING N N 42 A1ILK C17 H172 SING N N 43 A1ILK C17 H171 SING N N 44 A1ILK C20 H202 SING N N 45 A1ILK C20 H201 SING N N 46 A1ILK C21 H212 SING N N 47 A1ILK C21 H211 SING N N 48 A1ILK C22 H222 SING N N 49 A1ILK C22 H221 SING N N 50 A1ILK C26 H261 SING N N 51 A1ILK C07 H071 SING N N 52 A1ILK C08 H081 SING N N 53 A1ILK C09 H091 SING N N 54 A1ILK C14 H142 SING N N 55 A1ILK C14 H141 SING N N 56 A1ILK C18 H183 SING N N 57 A1ILK C18 H182 SING N N 58 A1ILK C18 H181 SING N N 59 A1ILK C23 H232 SING N N 60 A1ILK C23 H231 SING N N 61 A1ILK C25 H251 SING N N 62 A1ILK C30 H301 SING N N 63 A1ILK C32 H322 SING N N 64 A1ILK C32 H321 SING N N 65 A1ILK C32 H323 SING N N 66 A1ILK C35 H352 SING N N 67 A1ILK C35 H351 SING N N 68 A1ILK C35 H353 SING N N 69 A1ILK C36 H361 SING N N 70 A1ILK N05 H051 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ILK InChI InChI 1.06 "InChI=1S/C27H31N7O2/c1-4-25(35)33-14-8-7-9-20(16-33)34-24-11-6-5-10-22(24)29-27(34)30-26(36)19-12-13-28-23(15-19)21-17-32(3)31-18(21)2/h5-6,10-13,15,17,20H,4,7-9,14,16H2,1-3H3,(H,29,30,36)" A1ILK InChIKey InChI 1.06 MLDFTEWTPGQJOW-UHFFFAOYSA-N A1ILK SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCCC[C@H](C1)N2C(Nc3ccccc23)=NC(=O)c4ccnc(c4)c5cn(C)nc5C" A1ILK SMILES CACTVS 3.385 "CCC(=O)N1CCCC[CH](C1)N2C(Nc3ccccc23)=NC(=O)c4ccnc(c4)c5cn(C)nc5C" A1ILK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC[C@H](C1)N\2c3ccccc3N/C2=N\C(=O)c4ccnc(c4)c5cn(nc5C)C" A1ILK SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCCC(C1)N2c3ccccc3NC2=NC(=O)c4ccnc(c4)c5cn(nc5C)C" # _pdbx_chem_comp_identifier.comp_id A1ILK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{N}~{E})-2-(1,3-dimethylpyrazol-4-yl)-~{N}-[3-[(3~{R})-1-propanoylazepan-3-yl]-1~{H}-benzimidazol-2-ylidene]pyridine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ILK "Create component" 2024-08-19 PDBE A1ILK "Modify PCM" 2024-09-27 PDBE A1ILK "Initial release" 2026-03-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ILK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #