data_A1ILN # _chem_comp.id A1ILN _chem_comp.name "(~{N}~{E})-2-isoquinolin-4-yl-~{N}-[3-[(3~{R})-1-propanoylazepan-3-yl]-1~{H}-benzimidazol-2-ylidene]pyridine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H30 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-19 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ILN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ILN C10 C1 C 0 1 Y N N N N N 0.170 -50.219 15.900 -5.267 -2.572 0.187 C10 A1ILN 1 A1ILN N12 N1 N 0 1 N N N N N N 0.011 -51.028 18.421 -3.149 -1.204 -0.182 N12 A1ILN 2 A1ILN C13 C2 C 0 1 N N R N N N -1.018 -50.105 18.984 -3.682 0.101 -0.583 C13 A1ILN 3 A1ILN C17 C3 C 0 1 N N N N N N -5.542 -49.437 17.879 -5.928 3.843 0.633 C17 A1ILN 4 A1ILN C20 C4 C 0 1 N N N N N N -3.932 -49.499 20.447 -3.482 3.462 -0.695 C20 A1ILN 5 A1ILN C21 C5 C 0 1 N N N N N N -2.782 -49.147 21.414 -2.893 2.892 -1.998 C21 A1ILN 6 A1ILN C22 C6 C 0 1 N N N N N N -1.621 -48.394 20.767 -3.738 1.743 -2.490 C22 A1ILN 7 A1ILN C24 C7 C 0 1 Y N N N N N 0.869 -53.744 22.566 1.577 -0.218 -0.396 C24 A1ILN 8 A1ILN C26 C8 C 0 1 Y N N N N N 0.935 -55.138 24.569 2.446 2.000 -0.676 C26 A1ILN 9 A1ILN C28 C9 C 0 1 Y N N N N N -0.381 -53.201 24.503 3.933 0.239 -0.502 C28 A1ILN 10 A1ILN C02 C10 C 0 1 N N N N N N 1.237 -53.464 21.043 0.438 -1.159 -0.258 C02 A1ILN 11 A1ILN C04 C11 C 0 1 N N N N N N 0.675 -52.087 19.125 -1.832 -1.523 -0.060 C04 A1ILN 12 A1ILN C06 C12 C 0 1 Y N N N N N 1.429 -52.064 16.902 -3.002 -3.347 0.463 C06 A1ILN 13 A1ILN C07 C13 C 0 1 Y N N N N N 2.048 -52.280 15.668 -3.479 -4.598 0.829 C07 A1ILN 14 A1ILN C08 C14 C 0 1 Y N N N N N 1.720 -51.453 14.543 -4.839 -4.830 0.872 C08 A1ILN 15 A1ILN C09 C15 C 0 1 Y N N N N N 0.810 -50.457 14.664 -5.731 -3.820 0.551 C09 A1ILN 16 A1ILN C11 C16 C 0 1 Y N N N N N 0.490 -51.038 17.030 -3.901 -2.328 0.140 C11 A1ILN 17 A1ILN C14 C17 C 0 1 N N N N N N -2.196 -50.984 19.402 -3.230 1.175 0.437 C14 A1ILN 18 A1ILN C16 C18 C 0 1 N N N N N N -4.157 -50.228 18.031 -5.138 2.578 0.848 C16 A1ILN 19 A1ILN C18 C19 C 0 1 N N N N N N -6.698 -50.474 18.057 -7.208 3.793 1.469 C18 A1ILN 20 A1ILN C23 C20 C 0 1 N N N N N N -0.507 -49.287 20.179 -3.190 0.435 -1.928 C23 A1ILN 21 A1ILN C25 C21 C 0 1 Y N N N N N 1.358 -54.923 23.238 1.360 1.155 -0.551 C25 A1ILN 22 A1ILN C29 C22 C 0 1 Y N N N N N -1.401 -52.221 25.323 5.336 -0.233 -0.481 C29 A1ILN 23 A1ILN C30 C23 C 0 1 Y N N N N N -2.687 -51.800 24.779 6.305 0.404 0.335 C30 A1ILN 24 A1ILN C31 C24 C 0 1 Y N N N N N -3.178 -52.209 23.460 5.990 1.496 1.151 C31 A1ILN 25 A1ILN C32 C25 C 0 1 Y N N N N N -4.411 -51.772 23.000 6.965 2.066 1.914 C32 A1ILN 26 A1ILN C33 C26 C 0 1 Y N N N N N -5.219 -50.912 23.805 8.270 1.578 1.893 C33 A1ILN 27 A1ILN C34 C27 C 0 1 Y N N N N N -4.772 -50.514 25.054 8.611 0.517 1.110 C34 A1ILN 28 A1ILN C35 C28 C 0 1 Y N N N N N -3.477 -50.969 25.554 7.632 -0.095 0.311 C35 A1ILN 29 A1ILN C36 C29 C 0 1 Y N N N N N -3.028 -50.551 26.849 7.927 -1.192 -0.515 C36 A1ILN 30 A1ILN C38 C30 C 0 1 Y N N N N N -1.038 -51.771 26.600 5.734 -1.311 -1.253 C38 A1ILN 31 A1ILN C39 C31 C 0 1 Y N N N N N -0.028 -52.906 23.217 2.894 -0.680 -0.369 C39 A1ILN 32 A1ILN N03 N2 N 0 1 N N N N N N 0.490 -52.367 20.355 -0.816 -0.698 -0.286 N03 A1ILN 33 A1ILN N05 N3 N 0 1 N N N N N N 1.560 -52.740 18.219 -1.722 -2.821 0.331 N05 A1ILN 34 A1ILN N15 N4 N 0 1 N N N N N N -3.453 -50.230 19.310 -3.965 2.399 0.209 N15 A1ILN 35 A1ILN N27 N5 N 0 1 Y N N N N N 0.137 -54.334 25.158 3.677 1.533 -0.651 N27 A1ILN 36 A1ILN N37 N6 N 0 1 Y N N N N N -1.845 -50.967 27.311 6.986 -1.741 -1.249 N37 A1ILN 37 A1ILN O01 O1 O 0 1 N N N N N N 1.986 -54.126 20.465 0.646 -2.351 -0.119 O01 A1ILN 38 A1ILN O19 O2 O 0 1 N N N N N N -3.711 -50.849 17.118 -5.557 1.721 1.597 O19 A1ILN 39 A1ILN H101 H1 H 0 0 N N N N N N -0.556 -49.425 15.992 -5.965 -1.788 -0.067 H101 A1ILN 40 A1ILN H131 H2 H 0 0 N N N N N N -1.353 -49.412 18.199 -4.771 0.056 -0.597 H131 A1ILN 41 A1ILN H172 H3 H 0 0 N N N N N N -5.603 -48.974 16.883 -5.329 4.701 0.937 H172 A1ILN 42 A1ILN H171 H4 H 0 0 N N N N N N -5.615 -48.657 18.651 -6.186 3.935 -0.422 H171 A1ILN 43 A1ILN H202 H5 H 0 0 N N N N N N -4.406 -48.569 20.101 -2.714 4.041 -0.182 H202 A1ILN 44 A1ILN H201 H6 H 0 0 N N N N N N -4.673 -50.112 20.980 -4.314 4.120 -0.942 H201 A1ILN 45 A1ILN H212 H7 H 0 0 N N N N N N -3.191 -48.521 22.221 -2.869 3.674 -2.756 H212 A1ILN 46 A1ILN H211 H8 H 0 0 N N N N N N -2.391 -50.083 21.838 -1.879 2.538 -1.811 H211 A1ILN 47 A1ILN H222 H9 H 0 0 N N N N N N -2.027 -47.776 19.953 -4.767 1.880 -2.157 H222 A1ILN 48 A1ILN H221 H10 H 0 0 N N N N N N -1.169 -47.744 21.531 -3.710 1.712 -3.579 H221 A1ILN 49 A1ILN H261 H11 H 0 0 N N N N N N 1.296 -56.005 25.102 2.282 3.061 -0.795 H261 A1ILN 50 A1ILN H071 H12 H 0 0 N N N N N N 2.775 -53.071 15.561 -2.787 -5.389 1.079 H071 A1ILN 51 A1ILN H081 H13 H 0 0 N N N N N N 2.202 -51.626 13.592 -5.209 -5.804 1.156 H081 A1ILN 52 A1ILN H091 H14 H 0 0 N N N N N N 0.572 -49.841 13.809 -6.793 -4.009 0.588 H091 A1ILN 53 A1ILN H142 H15 H 0 0 N N N N N N -2.249 -51.860 18.738 -3.424 0.819 1.449 H142 A1ILN 54 A1ILN H141 H16 H 0 0 N N N N N N -2.049 -51.319 20.439 -2.164 1.364 0.317 H141 A1ILN 55 A1ILN H183 H17 H 0 0 N N N N N N -7.667 -49.964 17.958 -6.950 3.701 2.524 H183 A1ILN 56 A1ILN H182 H18 H 0 0 N N N N N N -6.614 -51.253 17.285 -7.780 4.708 1.314 H182 A1ILN 57 A1ILN H181 H19 H 0 0 N N N N N N -6.626 -50.935 19.053 -7.807 2.934 1.165 H181 A1ILN 58 A1ILN H232 H20 H 0 0 N N N N N N 0.325 -48.649 19.847 -2.103 0.502 -1.892 H232 A1ILN 59 A1ILN H231 H21 H 0 0 N N N N N N -0.152 -49.976 20.959 -3.462 -0.374 -2.607 H231 A1ILN 60 A1ILN H251 H22 H 0 0 N N N N N N 2.022 -55.615 22.742 0.355 1.549 -0.572 H251 A1ILN 61 A1ILN H311 H23 H 0 0 N N N N N N -2.574 -52.856 22.841 4.982 1.884 1.176 H311 A1ILN 62 A1ILN H321 H24 H 0 0 N N N N N N -4.762 -52.084 22.027 6.722 2.909 2.544 H321 A1ILN 63 A1ILN H331 H25 H 0 0 N N N N N N -6.177 -50.573 23.440 9.023 2.049 2.508 H331 A1ILN 64 A1ILN H341 H26 H 0 0 N N N N N N -5.384 -49.864 25.662 9.626 0.150 1.103 H341 A1ILN 65 A1ILN H361 H27 H 0 0 N N N N N N -3.645 -49.900 27.451 8.932 -1.586 -0.547 H361 A1ILN 66 A1ILN H381 H28 H 0 0 N N N N N N -0.091 -52.077 27.020 5.007 -1.810 -1.877 H381 A1ILN 67 A1ILN H391 H29 H 0 0 N N N N N N -0.437 -52.040 22.717 3.104 -1.732 -0.247 H391 A1ILN 68 A1ILN H051 H30 H 0 0 N N N N N N 2.160 -53.512 18.431 -0.892 -3.297 0.490 H051 A1ILN 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ILN C02 O01 DOUB N N 1 A1ILN C04 N03 DOUB N N 2 A1ILN N05 C04 SING N N 3 A1ILN C06 N05 SING N N 4 A1ILN C08 C07 DOUB Y N 5 A1ILN C09 C08 SING Y N 6 A1ILN C10 C09 DOUB Y N 7 A1ILN C07 C06 SING Y N 8 A1ILN C11 C06 DOUB Y N 9 A1ILN N12 C11 SING N N 10 A1ILN C13 N12 SING N N 11 A1ILN C14 C13 SING N N 12 A1ILN N15 C14 SING N N 13 A1ILN C18 C17 SING N N 14 A1ILN C17 C16 SING N N 15 A1ILN O19 C16 DOUB N N 16 A1ILN C16 N15 SING N N 17 A1ILN C20 N15 SING N N 18 A1ILN C21 C20 SING N N 19 A1ILN C22 C21 SING N N 20 A1ILN C23 C22 SING N N 21 A1ILN N03 C02 SING N N 22 A1ILN C24 C02 SING N N 23 A1ILN C25 C24 DOUB Y N 24 A1ILN C26 C25 SING Y N 25 A1ILN N27 C26 DOUB Y N 26 A1ILN C28 N27 SING Y N 27 A1ILN C30 C29 DOUB Y N 28 A1ILN C32 C31 DOUB Y N 29 A1ILN C33 C32 SING Y N 30 A1ILN C34 C33 DOUB Y N 31 A1ILN C31 C30 SING Y N 32 A1ILN C35 C30 SING Y N 33 A1ILN C36 C35 DOUB Y N 34 A1ILN N37 C36 SING Y N 35 A1ILN C38 N37 DOUB Y N 36 A1ILN C29 C28 SING N N 37 A1ILN C39 C28 DOUB Y N 38 A1ILN C04 N12 SING N N 39 A1ILN C10 C11 SING Y N 40 A1ILN C13 C23 SING N N 41 A1ILN C24 C39 SING Y N 42 A1ILN C29 C38 SING Y N 43 A1ILN C34 C35 SING Y N 44 A1ILN C10 H101 SING N N 45 A1ILN C13 H131 SING N N 46 A1ILN C17 H172 SING N N 47 A1ILN C17 H171 SING N N 48 A1ILN C20 H202 SING N N 49 A1ILN C20 H201 SING N N 50 A1ILN C21 H212 SING N N 51 A1ILN C21 H211 SING N N 52 A1ILN C22 H222 SING N N 53 A1ILN C22 H221 SING N N 54 A1ILN C26 H261 SING N N 55 A1ILN C07 H071 SING N N 56 A1ILN C08 H081 SING N N 57 A1ILN C09 H091 SING N N 58 A1ILN C14 H142 SING N N 59 A1ILN C14 H141 SING N N 60 A1ILN C18 H183 SING N N 61 A1ILN C18 H182 SING N N 62 A1ILN C18 H181 SING N N 63 A1ILN C23 H232 SING N N 64 A1ILN C23 H231 SING N N 65 A1ILN C25 H251 SING N N 66 A1ILN C31 H311 SING N N 67 A1ILN C32 H321 SING N N 68 A1ILN C33 H331 SING N N 69 A1ILN C34 H341 SING N N 70 A1ILN C36 H361 SING N N 71 A1ILN C38 H381 SING N N 72 A1ILN C39 H391 SING N N 73 A1ILN N05 H051 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ILN InChI InChI 1.06 "InChI=1S/C31H30N6O2/c1-2-29(38)36-16-8-7-10-23(20-36)37-28-13-6-5-12-26(28)34-31(37)35-30(39)21-14-15-33-27(17-21)25-19-32-18-22-9-3-4-11-24(22)25/h3-6,9,11-15,17-19,23H,2,7-8,10,16,20H2,1H3,(H,34,35,39)" A1ILN InChIKey InChI 1.06 CMVAZUNFJIFADZ-UHFFFAOYSA-N A1ILN SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCCC[C@H](C1)N2C(Nc3ccccc23)=NC(=O)c4ccnc(c4)c5cncc6ccccc56" A1ILN SMILES CACTVS 3.385 "CCC(=O)N1CCCC[CH](C1)N2C(Nc3ccccc23)=NC(=O)c4ccnc(c4)c5cncc6ccccc56" A1ILN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC[C@H](C1)N\2c3ccccc3N/C2=N\C(=O)c4ccnc(c4)c5cncc6c5cccc6" A1ILN SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCCC(C1)N2c3ccccc3NC2=NC(=O)c4ccnc(c4)c5cncc6c5cccc6" # _pdbx_chem_comp_identifier.comp_id A1ILN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{N}~{E})-2-isoquinolin-4-yl-~{N}-[3-[(3~{R})-1-propanoylazepan-3-yl]-1~{H}-benzimidazol-2-ylidene]pyridine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ILN "Create component" 2024-08-19 PDBE A1ILN "Modify PCM" 2024-09-27 PDBE A1ILN "Initial release" 2026-03-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ILN _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #