data_A1IM3 # _chem_comp.id A1IM3 _chem_comp.name "(3~{R})-3-azanyl-4-(1~{H}-indol-3-yl)butanal" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 218.252 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IM3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EOX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IM3 N N1 N 0 1 N N N Y Y N -22.753 -15.892 63.785 1.747 -1.390 0.786 N A1IM3 1 A1IM3 CB C1 C 0 1 N N R N Y N -23.746 -14.855 63.517 1.571 -0.294 -0.176 CB A1IM3 2 A1IM3 CG C2 C 0 1 N N N N N N -24.540 -14.497 64.797 0.556 -0.709 -1.243 CG A1IM3 3 A1IM3 CD C3 C 0 1 Y N N N N N -23.713 -14.416 66.047 -0.795 -0.900 -0.603 CD A1IM3 4 A1IM3 CE2 C4 C 0 1 Y N N N N N -22.628 -13.515 66.329 -1.790 0.143 -0.341 CE2 A1IM3 5 A1IM3 CZ3 C5 C 0 1 Y N N N N N -22.025 -12.466 65.631 -1.833 1.521 -0.563 CZ3 A1IM3 6 A1IM3 CH3 C6 C 0 1 Y N N N N N -20.996 -11.769 66.222 -2.939 2.233 -0.192 CH3 A1IM3 7 A1IM3 CT2 C7 C 0 1 Y N N N N N -20.529 -12.110 67.488 -4.020 1.598 0.403 CT2 A1IM3 8 A1IM3 CH2 C8 C 0 1 Y N N N N N -21.088 -13.143 68.205 -3.998 0.240 0.632 CH2 A1IM3 9 A1IM3 CZ2 C9 C 0 1 Y N N N N N -22.135 -13.840 67.611 -2.883 -0.506 0.263 CZ2 A1IM3 10 A1IM3 NZ1 N2 N 0 1 Y N N N N N -22.863 -14.892 68.077 -2.563 -1.842 0.354 NZ1 A1IM3 11 A1IM3 CE1 C10 C 0 1 Y N N N N N -23.799 -15.230 67.137 -1.318 -2.059 -0.171 CE1 A1IM3 12 A1IM3 CA C11 C 0 1 N N N N Y N -24.681 -15.282 62.370 2.912 0.020 -0.842 CA A1IM3 13 A1IM3 C C12 C 0 1 N N N N Y Y -24.265 -16.563 61.686 3.875 0.547 0.190 C A1IM3 14 A1IM3 O O1 O 0 1 N N N N Y Y -24.185 -17.605 62.312 3.525 0.659 1.341 O A1IM3 15 A1IM3 H1 H1 H 0 1 N N N Y Y N -22.156 -15.598 64.531 2.083 -2.224 0.327 H1 A1IM3 16 A1IM3 H2 H2 H 0 1 N Y N Y Y N -23.217 -16.739 64.044 2.364 -1.118 1.536 H2 A1IM3 17 A1IM3 H4 H4 H 0 1 N N N N Y N -23.220 -13.945 63.192 1.208 0.592 0.346 H4 A1IM3 18 A1IM3 H5 H5 H 0 1 N N N N N N -25.020 -13.520 64.640 0.491 0.067 -2.004 H5 A1IM3 19 A1IM3 H6 H6 H 0 1 N N N N N N -25.313 -15.265 64.947 0.875 -1.644 -1.703 H6 A1IM3 20 A1IM3 H7 H7 H 0 1 N N N N N N -22.362 -12.205 64.639 -0.996 2.022 -1.026 H7 A1IM3 21 A1IM3 H8 H8 H 0 1 N N N N N N -20.543 -10.943 65.694 -2.971 3.299 -0.364 H8 A1IM3 22 A1IM3 H9 H9 H 0 1 N N N N N N -19.710 -11.552 67.917 -4.887 2.175 0.691 H9 A1IM3 23 A1IM3 H10 H10 H 0 1 N N N N N N -20.728 -13.402 69.190 -4.844 -0.245 1.097 H10 A1IM3 24 A1IM3 H11 H11 H 0 1 N N N N N N -22.735 -15.343 68.960 -3.136 -2.527 0.731 H11 A1IM3 25 A1IM3 H12 H12 H 0 1 N N N N N N -24.511 -16.035 67.245 -0.828 -3.019 -0.228 H12 A1IM3 26 A1IM3 H13 H13 H 0 1 N N N N Y N -24.698 -14.478 61.619 3.317 -0.888 -1.288 H13 A1IM3 27 A1IM3 H14 H14 H 0 1 N N N N Y N -25.692 -15.421 62.781 2.764 0.772 -1.618 H14 A1IM3 28 A1IM3 OXT OXT O 0 1 N Y N N Y Y -23.892 -16.477 60.412 5.122 0.891 -0.168 O1 A1IM3 29 A1IM3 HXT HXT H 0 1 N Y N N Y Y -23.577 -17.323 60.116 5.703 1.223 0.529 H3 A1IM3 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IM3 C O DOUB N N 1 A1IM3 C CA SING N N 2 A1IM3 CA CB SING N N 3 A1IM3 CB N SING N N 4 A1IM3 CB CG SING N N 5 A1IM3 CG CD SING N N 6 A1IM3 CZ3 CH3 DOUB Y N 7 A1IM3 CZ3 CE2 SING Y N 8 A1IM3 CD CE2 SING Y N 9 A1IM3 CD CE1 DOUB Y N 10 A1IM3 CH3 CT2 SING Y N 11 A1IM3 CE2 CZ2 DOUB Y N 12 A1IM3 CE1 NZ1 SING Y N 13 A1IM3 CT2 CH2 DOUB Y N 14 A1IM3 CZ2 NZ1 SING Y N 15 A1IM3 CZ2 CH2 SING Y N 16 A1IM3 N H1 SING N N 17 A1IM3 N H2 SING N N 18 A1IM3 CB H4 SING N N 19 A1IM3 CG H5 SING N N 20 A1IM3 CG H6 SING N N 21 A1IM3 CZ3 H7 SING N N 22 A1IM3 CH3 H8 SING N N 23 A1IM3 CT2 H9 SING N N 24 A1IM3 CH2 H10 SING N N 25 A1IM3 NZ1 H11 SING N N 26 A1IM3 CE1 H12 SING N N 27 A1IM3 CA H13 SING N N 28 A1IM3 CA H14 SING N N 29 A1IM3 C OXT SING N N 30 A1IM3 OXT HXT SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IM3 InChI InChI 1.06 "InChI=1S/C12H14N2O2/c13-9(6-12(15)16)5-8-7-14-11-4-2-1-3-10(8)11/h1-4,7,9,14H,5-6,13H2,(H,15,16)/t9-/m1/s1" A1IM3 InChIKey InChI 1.06 DUVVFMLAHWNDJD-SECBINFHSA-N A1IM3 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CC(O)=O)Cc1c[nH]c2ccccc12" A1IM3 SMILES CACTVS 3.385 "N[CH](CC(O)=O)Cc1c[nH]c2ccccc12" A1IM3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)C[C@H](CC(=O)O)N" A1IM3 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CC(CC(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1IM3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-3-azanyl-4-(1~{H}-indol-3-yl)butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IM3 "Create component" 2024-08-30 PDBE A1IM3 "Initial release" 2024-09-11 RCSB A1IM3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IM3 _pdbx_chem_comp_pcm.modified_residue_id DTR _pdbx_chem_comp_pcm.type "Beta-amino acid" _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #