data_A1IM8 # _chem_comp.id A1IM8 _chem_comp.name "(2~{R})-2-azanyl-~{N}-methyl-3-pyridin-4-yl-propanamide" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H13 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-31 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IM8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EOR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IM8 C4 C1 C 0 1 Y N N N N N -22.579 -15.341 57.748 1.939 -1.338 0.090 C4 A1IM8 1 A1IM8 C5 C2 C 0 1 Y N N N N N -21.922 -14.208 57.314 3.283 -1.328 0.410 C5 A1IM8 2 A1IM8 C6 C3 C 0 1 Y N N N N N -23.751 -13.473 56.179 3.485 0.878 -0.225 C6 A1IM8 3 A1IM8 N N N 0 1 N N N Y Y N -24.882 -16.649 60.309 -0.589 1.658 0.795 N4 A1IM8 4 A1IM8 CA CA C 0 1 N N R N Y N -24.271 -17.324 59.172 -0.928 0.273 0.439 CA2 A1IM8 5 A1IM8 C C C 0 1 N N N N Y Y -24.585 -18.814 59.200 -2.396 0.184 0.111 C3 A1IM8 6 A1IM8 O O O 0 1 N N N N Y Y -23.666 -19.620 59.253 -3.013 1.184 -0.188 O3 A1IM8 7 A1IM8 CB2 C6 C 0 1 N N N N N N -24.707 -16.731 57.829 -0.106 -0.156 -0.778 CB2 A1IM8 8 A1IM8 CG2 C7 C 0 1 Y N N N N N -23.904 -15.541 57.372 1.355 -0.185 -0.413 CG2 A1IM8 9 A1IM8 CD2 C8 C 0 1 Y N N N N N -24.479 -14.577 56.549 2.149 0.941 -0.571 CD2 A1IM8 10 A1IM8 NZ N2 N 0 1 Y N N N N N -22.488 -13.275 56.546 4.008 -0.238 0.246 NZ A1IM8 11 A1IM8 N5 N3 N 0 1 N N N N N N -25.854 -19.177 59.069 -3.024 -1.008 0.150 N5 A1IM8 12 A1IM8 C13 C9 C 0 1 N N N N N N -26.363 -20.412 59.623 -4.451 -1.095 -0.169 C13 A1IM8 13 A1IM8 H1 H1 H 0 1 N N N N N N -22.072 -16.063 58.371 1.351 -2.233 0.227 H1 A1IM8 14 A1IM8 H7 H7 H 0 1 N N N N N N -20.893 -14.069 57.612 3.746 -2.223 0.799 H2 A1IM8 15 A1IM8 H3 H3 H 0 1 N N N N N N -24.228 -12.728 55.559 4.110 1.750 -0.346 H3 A1IM8 16 A1IM8 H H H 0 1 N N N Y Y N -24.566 -17.073 61.158 -0.789 2.286 0.032 H4 A1IM8 17 A1IM8 H2 H2 H 0 1 N Y N Y Y N -24.623 -15.683 60.302 -1.071 1.943 1.634 H5 A1IM8 18 A1IM8 HA HA H 0 1 N N N N Y N -23.179 -17.212 59.245 -0.703 -0.384 1.279 H7 A1IM8 19 A1IM8 H8 H8 H 0 1 N N N N N N -25.759 -16.420 57.918 -0.421 -1.150 -1.097 H8 A1IM8 20 A1IM8 H9 H9 H 0 1 N N N N N N -24.620 -17.517 57.064 -0.264 0.553 -1.591 H9 A1IM8 21 A1IM8 H10 H10 H 0 1 N N N N N N -25.495 -14.697 56.202 1.727 1.858 -0.956 H10 A1IM8 22 A1IM8 H11 H11 H 0 1 N N N N N N -26.480 -18.577 58.571 -2.531 -1.809 0.389 H11 A1IM8 23 A1IM8 H12 H12 H 0 1 N N N N N N -27.435 -20.504 59.393 -5.017 -0.477 0.527 H12 A1IM8 24 A1IM8 H13 H13 H 0 1 N N N N N N -25.820 -21.262 59.184 -4.618 -0.743 -1.187 H13 A1IM8 25 A1IM8 H14 H14 H 0 1 N N N N N N -26.221 -20.410 60.714 -4.780 -2.131 -0.085 H14 A1IM8 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IM8 C6 NZ DOUB Y N 1 A1IM8 C6 CD2 SING Y N 2 A1IM8 NZ C5 SING Y N 3 A1IM8 CD2 CG2 DOUB Y N 4 A1IM8 C5 C4 DOUB Y N 5 A1IM8 CG2 C4 SING Y N 6 A1IM8 CG2 CB2 SING N N 7 A1IM8 CB2 CA SING N N 8 A1IM8 N5 C SING N N 9 A1IM8 N5 C13 SING N N 10 A1IM8 CA C SING N N 11 A1IM8 CA N SING N N 12 A1IM8 C O DOUB N N 13 A1IM8 C4 H1 SING N N 14 A1IM8 C5 H7 SING N N 15 A1IM8 C6 H3 SING N N 16 A1IM8 N H SING N N 17 A1IM8 N H2 SING N N 18 A1IM8 CA HA SING N N 19 A1IM8 CB2 H8 SING N N 20 A1IM8 CB2 H9 SING N N 21 A1IM8 CD2 H10 SING N N 22 A1IM8 N5 H11 SING N N 23 A1IM8 C13 H12 SING N N 24 A1IM8 C13 H13 SING N N 25 A1IM8 C13 H14 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IM8 InChI InChI 1.06 "InChI=1S/C9H13N3O/c1-11-9(13)8(10)6-7-2-4-12-5-3-7/h2-5,8H,6,10H2,1H3,(H,11,13)/t8-/m1/s1" A1IM8 InChIKey InChI 1.06 LJVDSZALHNBLNR-MRVPVSSYSA-N A1IM8 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](N)Cc1ccncc1" A1IM8 SMILES CACTVS 3.385 "CNC(=O)[CH](N)Cc1ccncc1" A1IM8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H](Cc1ccncc1)N" A1IM8 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(Cc1ccncc1)N" # _pdbx_chem_comp_identifier.comp_id A1IM8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-~{N}-methyl-3-pyridin-4-yl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IM8 "Create component" 2024-08-31 PDBE A1IM8 "Modify linking type" 2024-09-02 PDBE A1IM8 "Initial release" 2024-09-11 RCSB A1IM8 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IM8 _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #