data_A1IMU # _chem_comp.id A1IMU _chem_comp.name "(2R,3S)-3-[[(2S)-3-cyclopropyl-2-[2-oxidanylidene-3-(phenylcarbamoylamino)pyridin-1-yl]propanoyl]amino]-N-methyl-2-oxidanyl-4-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H34 N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 538.595 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IMU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AJ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IMU N1 N1 N 0 1 N N N N N N -15.302 7.059 -0.598 5.949 -0.085 -0.302 N1 A1IMU 1 A1IMU N3 N2 N 0 1 N N N N N N -15.370 1.159 -0.874 0.851 2.197 -0.120 N3 A1IMU 2 A1IMU C4 C1 C 0 1 Y N N N N N -15.260 9.342 -1.453 7.433 -1.970 -0.587 C4 A1IMU 3 A1IMU C5 C2 C 0 1 Y N N N N N -14.804 8.385 -0.555 6.187 -1.463 -0.242 C5 A1IMU 4 A1IMU C6 C3 C 0 1 Y N N N N N -13.892 8.761 0.423 5.177 -2.326 0.163 C6 A1IMU 5 A1IMU C7 C4 C 0 1 N N N N N N -14.630 5.948 -1.057 4.714 0.374 -0.586 C7 A1IMU 6 A1IMU C8 C5 C 0 1 N N N N N N -15.181 3.526 -1.059 3.156 2.167 -0.747 C8 A1IMU 7 A1IMU C10 C6 C 0 1 N N N N N N -15.578 1.065 -2.221 0.590 3.072 -1.127 C10 A1IMU 8 A1IMU C13 C7 C 0 1 N N S N N N -15.337 -0.059 -0.043 -0.240 1.742 0.745 C13 A1IMU 9 A1IMU C15 C8 C 0 1 N N S N N N -12.370 -1.646 1.725 -3.404 -0.137 -0.311 C15 A1IMU 10 A1IMU C17 C9 C 0 1 N N N N N N -17.669 -1.022 -0.182 0.158 3.579 2.391 C17 A1IMU 11 A1IMU C20 C10 C 0 1 N N R N N N -12.766 -3.120 1.890 -4.425 0.888 -0.809 C20 A1IMU 12 A1IMU C21 C11 C 0 1 N N N N N N -11.578 -4.072 1.879 -5.451 0.197 -1.670 C21 A1IMU 13 A1IMU C22 C12 C 0 1 N N N N N N -11.667 -1.058 2.944 -4.113 -1.193 0.539 C22 A1IMU 14 A1IMU C24 C13 C 0 1 N N N N N N -10.484 0.874 1.675 -2.547 -3.029 -0.213 C24 A1IMU 15 A1IMU C26 C14 C 0 1 N N N N N N -10.978 1.131 4.017 -3.777 -3.296 1.847 C26 A1IMU 16 A1IMU C1 C15 C 0 1 Y N N N N N -13.423 10.065 0.476 5.415 -3.685 0.222 C1 A1IMU 17 A1IMU C2 C16 C 0 1 Y N N N N N -13.854 11.003 -0.435 6.657 -4.187 -0.123 C2 A1IMU 18 A1IMU C3 C17 C 0 1 Y N N N N N -14.762 10.639 -1.405 7.663 -3.331 -0.532 C3 A1IMU 19 A1IMU N2 N3 N 0 1 N N N N N N -15.011 4.784 -0.444 4.460 1.696 -0.540 N2 A1IMU 20 A1IMU C9 C18 C 0 1 N N N N N N -15.156 2.393 -0.240 2.100 1.738 0.087 C9 A1IMU 21 A1IMU C11 C19 C 0 1 N N N N N N -15.623 2.162 -2.999 1.578 3.508 -1.941 C11 A1IMU 22 A1IMU C12 C20 C 0 1 N N N N N N -15.431 3.418 -2.432 2.892 3.057 -1.752 C12 A1IMU 23 A1IMU O1 O1 O 0 1 N N N N N N -13.793 5.988 -1.949 3.829 -0.405 -0.883 O1 A1IMU 24 A1IMU O2 O2 O 0 1 N N N N N N -14.952 2.399 0.967 2.320 0.953 0.995 O2 A1IMU 25 A1IMU C14 C21 C 0 1 N N N N N N -13.910 -0.537 0.147 -1.285 1.045 -0.088 C14 A1IMU 26 A1IMU N4 N4 N 0 1 N N N N N N -13.548 -0.852 1.395 -2.388 0.540 0.499 N4 A1IMU 27 A1IMU C16 C22 C 0 1 N N N N N N -16.223 -1.193 -0.568 -0.868 2.946 1.449 C16 A1IMU 28 A1IMU C18 C23 C 0 1 N N N N N N -18.710 -0.745 -1.219 -0.241 4.872 3.104 C18 A1IMU 29 A1IMU C19 C24 C 0 1 N N N N N N -18.677 -2.070 -0.537 -0.153 3.562 3.889 C19 A1IMU 30 A1IMU O3 O3 O 0 1 N N N N N N -13.166 -0.638 -0.823 -1.133 0.940 -1.287 O3 A1IMU 31 A1IMU C23 C25 C 0 1 N N S N N N -11.465 0.441 2.759 -3.100 -2.242 0.999 C23 A1IMU 32 A1IMU C25 C26 C 0 1 N N N N N N -9.374 1.644 2.395 -2.400 -4.450 0.374 C25 A1IMU 33 A1IMU N5 N5 N 0 1 N N N N N N -9.828 1.740 3.777 -3.371 -4.522 1.473 N5 A1IMU 34 A1IMU O4 O4 O 0 1 N N N N N N -11.571 1.116 5.093 -4.569 -3.068 2.736 O4 A1IMU 35 A1IMU N6 N6 N 0 1 N N N N N N -11.520 -4.933 0.877 -6.383 -0.595 -1.103 N6 A1IMU 36 A1IMU C27 C27 C 0 1 N N N N N N -10.434 -5.880 0.703 -7.316 -1.348 -1.946 C27 A1IMU 37 A1IMU O5 O5 O 0 1 N N N N N N -13.686 -3.461 0.860 -3.758 1.891 -1.577 O5 A1IMU 38 A1IMU O6 O6 O 0 1 N N N N N N -10.761 -4.023 2.798 -5.439 0.354 -2.872 O6 A1IMU 39 A1IMU H6 H1 H 0 1 N N N N N N -16.233 6.916 -0.262 6.672 0.539 -0.135 H6 A1IMU 40 A1IMU H4 H2 H 0 1 N N N N N N -16.003 9.078 -2.190 8.220 -1.301 -0.903 H4 A1IMU 41 A1IMU H5 H3 H 0 1 N N N N N N -13.547 8.035 1.145 4.207 -1.935 0.433 H5 A1IMU 42 A1IMU H8 H4 H 0 1 N N N N N N -15.709 0.092 -2.670 -0.420 3.424 -1.279 H8 A1IMU 43 A1IMU H11 H5 H 0 1 N N N N N N -15.721 0.210 0.952 0.152 1.049 1.490 H11 A1IMU 44 A1IMU H13 H6 H 0 1 N N N N N N -11.668 -1.588 0.880 -2.926 -0.618 -1.165 H13 A1IMU 45 A1IMU H16 H7 H 0 1 N N N N N N -17.833 -0.527 0.787 1.201 3.470 2.092 H16 A1IMU 46 A1IMU H21 H8 H 0 1 N N N N N N -13.266 -3.222 2.864 -4.920 1.352 0.044 H21 A1IMU 47 A1IMU H22 H9 H 0 1 N N N N N N -12.282 -1.235 3.839 -4.563 -0.716 1.409 H22 A1IMU 48 A1IMU H23 H10 H 0 1 N N N N N N -10.688 -1.544 3.069 -4.891 -1.674 -0.055 H23 A1IMU 49 A1IMU H26 H11 H 0 1 N N N N N N -10.068 -0.006 1.162 -3.256 -3.020 -1.040 H26 A1IMU 50 A1IMU H25 H12 H 0 1 N N N N N N -10.986 1.523 0.942 -1.580 -2.634 -0.526 H25 A1IMU 51 A1IMU H1 H13 H 0 1 N N N N N N -12.713 10.347 1.239 4.632 -4.357 0.541 H1 A1IMU 52 A1IMU H2 H14 H 0 1 N N N N N N -13.483 12.016 -0.390 6.841 -5.250 -0.076 H2 A1IMU 53 A1IMU H3 H15 H 0 1 N N N N N N -15.089 11.366 -2.133 8.631 -3.725 -0.801 H3 A1IMU 54 A1IMU H7 H16 H 0 1 N N N N N N -15.186 4.831 0.539 5.179 2.323 -0.363 H7 A1IMU 55 A1IMU H9 H17 H 0 1 N N N N N N -15.807 2.068 -4.059 1.355 4.203 -2.736 H9 A1IMU 56 A1IMU H10 H18 H 0 1 N N N N N N -15.475 4.304 -3.048 3.685 3.398 -2.401 H10 A1IMU 57 A1IMU H12 H19 H 0 1 N N N N N N -14.119 -0.523 2.147 -2.509 0.625 1.457 H12 A1IMU 58 A1IMU H14 H20 H 0 1 N N N N N N -16.151 -1.217 -1.665 -1.180 3.679 0.706 H14 A1IMU 59 A1IMU H15 H21 H 0 1 N N N N N N -15.858 -2.145 -0.156 -1.735 2.619 2.023 H15 A1IMU 60 A1IMU H17 H22 H 0 1 N N N N N N -19.524 -0.037 -1.005 0.539 5.614 3.274 H17 A1IMU 61 A1IMU H18 H23 H 0 1 N N N N N N -18.423 -0.665 -2.278 -1.234 5.272 2.902 H18 A1IMU 62 A1IMU H19 H24 H 0 1 N N N N N N -19.466 -2.339 0.180 -1.089 3.100 4.203 H19 A1IMU 63 A1IMU H20 H25 H 0 1 N N N N N N -18.365 -2.967 -1.093 0.685 3.442 4.576 H20 A1IMU 64 A1IMU H24 H26 H 0 1 N N N N N N -12.444 0.874 2.505 -2.287 -1.770 1.550 H24 A1IMU 65 A1IMU H28 H27 H 0 1 N N N N N N -8.421 1.097 2.337 -2.633 -5.197 -0.384 H28 A1IMU 66 A1IMU H27 H28 H 0 1 N N N N N N -9.249 2.645 1.957 -1.390 -4.599 0.754 H27 A1IMU 67 A1IMU H29 H29 H 0 1 N N N N N N -9.314 2.225 4.484 -3.681 -5.348 1.876 H29 A1IMU 68 A1IMU H30 H30 H 0 1 N N N N N N -12.261 -4.932 0.206 -6.436 -0.667 -0.137 H30 A1IMU 69 A1IMU H31 H31 H 0 1 N N N N N N -10.614 -6.483 -0.199 -7.895 -0.654 -2.555 H31 A1IMU 70 A1IMU H32 H32 H 0 1 N N N N N N -9.485 -5.334 0.596 -6.756 -2.022 -2.594 H32 A1IMU 71 A1IMU H33 H33 H 0 1 N N N N N N -10.380 -6.541 1.581 -7.990 -1.927 -1.314 H33 A1IMU 72 A1IMU H34 H34 H 0 1 N N N N N N -13.940 -4.372 0.950 -3.082 2.378 -1.085 H34 A1IMU 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IMU C1 C2 DOUB Y N 1 A1IMU C2 C3 SING Y N 2 A1IMU C3 C4 DOUB Y N 3 A1IMU C4 C5 SING Y N 4 A1IMU C5 C6 DOUB Y N 5 A1IMU C1 C6 SING Y N 6 A1IMU C5 N1 SING N N 7 A1IMU N1 C7 SING N N 8 A1IMU C7 N2 SING N N 9 A1IMU N2 C8 SING N N 10 A1IMU C8 C9 SING N N 11 A1IMU C9 N3 SING N N 12 A1IMU N3 C10 SING N N 13 A1IMU C10 C11 DOUB N N 14 A1IMU C11 C12 SING N N 15 A1IMU C8 C12 DOUB N N 16 A1IMU C7 O1 DOUB N N 17 A1IMU C9 O2 DOUB N N 18 A1IMU N3 C13 SING N N 19 A1IMU C13 C14 SING N N 20 A1IMU C14 N4 SING N N 21 A1IMU N4 C15 SING N N 22 A1IMU C13 C16 SING N N 23 A1IMU C16 C17 SING N N 24 A1IMU C17 C18 SING N N 25 A1IMU C18 C19 SING N N 26 A1IMU C17 C19 SING N N 27 A1IMU C14 O3 DOUB N N 28 A1IMU C15 C20 SING N N 29 A1IMU C20 C21 SING N N 30 A1IMU C15 C22 SING N N 31 A1IMU C22 C23 SING N N 32 A1IMU C23 C24 SING N N 33 A1IMU C24 C25 SING N N 34 A1IMU C25 N5 SING N N 35 A1IMU N5 C26 SING N N 36 A1IMU C23 C26 SING N N 37 A1IMU C26 O4 DOUB N N 38 A1IMU C21 N6 SING N N 39 A1IMU N6 C27 SING N N 40 A1IMU C20 O5 SING N N 41 A1IMU C21 O6 DOUB N N 42 A1IMU N1 H6 SING N N 43 A1IMU C4 H4 SING N N 44 A1IMU C6 H5 SING N N 45 A1IMU C10 H8 SING N N 46 A1IMU C13 H11 SING N N 47 A1IMU C15 H13 SING N N 48 A1IMU C17 H16 SING N N 49 A1IMU C20 H21 SING N N 50 A1IMU C22 H22 SING N N 51 A1IMU C22 H23 SING N N 52 A1IMU C24 H26 SING N N 53 A1IMU C24 H25 SING N N 54 A1IMU C1 H1 SING N N 55 A1IMU C2 H2 SING N N 56 A1IMU C3 H3 SING N N 57 A1IMU N2 H7 SING N N 58 A1IMU C11 H9 SING N N 59 A1IMU C12 H10 SING N N 60 A1IMU N4 H12 SING N N 61 A1IMU C16 H14 SING N N 62 A1IMU C16 H15 SING N N 63 A1IMU C18 H17 SING N N 64 A1IMU C18 H18 SING N N 65 A1IMU C19 H19 SING N N 66 A1IMU C19 H20 SING N N 67 A1IMU C23 H24 SING N N 68 A1IMU C25 H28 SING N N 69 A1IMU C25 H27 SING N N 70 A1IMU N5 H29 SING N N 71 A1IMU N6 H30 SING N N 72 A1IMU C27 H31 SING N N 73 A1IMU C27 H32 SING N N 74 A1IMU C27 H33 SING N N 75 A1IMU O5 H34 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IMU InChI InChI 1.06 "InChI=1S/C27H34N6O6/c1-28-25(37)22(34)20(15-17-11-12-29-23(17)35)31-24(36)21(14-16-9-10-16)33-13-5-8-19(26(33)38)32-27(39)30-18-6-3-2-4-7-18/h2-8,13,16-17,20-22,34H,9-12,14-15H2,1H3,(H,28,37)(H,29,35)(H,31,36)(H2,30,32,39)/t17-,20+,21?,22+/m1/s1" A1IMU InChIKey InChI 1.06 KZJFPIFYXVQIAO-UGYVGDFNSA-N A1IMU SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(NC(=O)Nc4ccccc4)C3=O" A1IMU SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=CC=C(NC(=O)Nc4ccccc4)C3=O" A1IMU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(C3=O)NC(=O)Nc4ccccc4)O" A1IMU SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(C(CC1CCNC1=O)NC(=O)C(CC2CC2)N3C=CC=C(C3=O)NC(=O)Nc4ccccc4)O" # _pdbx_chem_comp_identifier.comp_id A1IMU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(phenylcarbamoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IMU "Create component" 2024-08-28 PDBE A1IMU "Initial release" 2024-09-11 RCSB A1IMU "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IMU _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C20 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #