data_A1IMY # _chem_comp.id A1IMY _chem_comp.name "(1S,3S,4S)-N-[(2S)-1-azanylidene-3-[(3S)-5,5-dimethyl-2-oxidanylidene-pyrrolidin-3-yl]propan-2-yl]-2-[(2R)-3-cyclobutyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]propanoyl]-5,5-bis(fluoranyl)-2-azabicyclo[2.2.2]octane-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H36 F5 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-28 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 577.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IMY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GLV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IMY C2 C1 C 0 1 N N N N N N 18.101 9.439 20.232 -2.520 3.952 -0.344 C2 A1IMY 1 A1IMY C5 C2 C 0 1 N N N N N N 19.398 8.748 19.914 -2.542 2.485 -0.001 C5 A1IMY 2 A1IMY C8 C3 C 0 1 N N R N N N 20.546 6.629 19.499 -2.850 0.148 -0.619 C8 A1IMY 3 A1IMY C11 C4 C 0 1 N N N N N N 20.239 6.987 16.990 -5.287 0.238 -0.077 C11 A1IMY 4 A1IMY C12 C5 C 0 1 N N N N N N 20.082 6.320 15.606 -6.431 -0.125 0.885 C12 A1IMY 5 A1IMY C15 C6 C 0 1 N N N N N N 20.724 5.552 20.542 -1.493 -0.270 -0.114 C15 A1IMY 6 A1IMY C18 C7 C 0 1 N N S N N N 22.047 3.848 21.746 0.184 -2.030 0.327 C18 A1IMY 7 A1IMY C23 C8 C 0 1 N N N N N N 24.196 5.551 20.958 -1.548 -3.463 -1.563 C23 A1IMY 8 A1IMY C24 C9 C 0 1 N N S N N N 23.136 5.163 19.923 -2.131 -2.639 -0.405 C24 A1IMY 9 A1IMY C27 C10 C 0 1 N N N N N N 23.534 2.693 20.132 -0.896 -4.100 1.211 C27 A1IMY 10 A1IMY C30 C11 C 0 1 N N N N N N 21.710 4.380 23.122 1.213 -1.476 -0.626 C30 A1IMY 11 A1IMY C33 C12 C 0 1 N N S N N N 20.621 4.029 25.269 3.501 -0.827 -1.155 C33 A1IMY 12 A1IMY C35 C13 C 0 1 N N N N N N 20.782 2.943 26.283 3.890 -1.785 -2.252 C35 A1IMY 13 A1IMY C37 C14 C 0 1 N N N N N N 19.168 4.393 24.951 4.741 -0.452 -0.341 C37 A1IMY 14 A1IMY C38 C15 C 0 1 N N S N N N 18.382 5.057 26.091 4.364 0.593 0.711 C38 A1IMY 15 A1IMY C39 C16 C 0 1 N N N N N N 18.864 6.477 26.432 5.560 0.872 1.650 C39 A1IMY 16 A1IMY C40 C17 C 0 1 N N N N N N 17.832 7.419 25.771 6.216 2.094 0.970 C40 A1IMY 17 A1IMY F1 F1 F 0 1 N N N N N N 18.362 10.739 20.630 -2.200 4.693 0.798 F1 A1IMY 18 A1IMY F3 F2 F 0 1 N N N N N N 17.278 9.433 19.111 -1.561 4.185 -1.336 F3 A1IMY 19 A1IMY F4 F3 F 0 1 N N N N N N 17.374 8.788 21.194 -3.780 4.340 -0.813 F4 A1IMY 20 A1IMY O6 O1 O 0 1 N N N N N N 20.405 9.387 19.692 -2.300 2.123 1.131 O6 A1IMY 21 A1IMY N7 N1 N 0 1 N N N N N N 19.379 7.418 19.847 -2.829 1.574 -0.953 N7 A1IMY 22 A1IMY C10 C18 C 0 1 N N N N N N 20.260 5.968 18.148 -3.899 -0.107 0.465 C10 A1IMY 23 A1IMY C13 C19 C 0 1 N N N N N N 18.877 7.183 15.291 -7.094 1.200 0.471 C13 A1IMY 24 A1IMY C14 C20 C 0 1 N N N N N N 18.921 7.738 16.732 -5.681 1.710 0.131 C14 A1IMY 25 A1IMY O16 O2 O 0 1 N N N N N N 19.775 5.242 21.236 -0.697 0.570 0.250 O16 A1IMY 26 A1IMY N17 N2 N 0 1 N N N N N N 21.900 4.921 20.723 -1.164 -1.576 -0.067 N17 A1IMY 27 A1IMY C20 C21 C 0 1 N N S N N N 23.437 3.224 21.563 0.174 -3.564 0.255 C20 A1IMY 28 A1IMY C22 C22 C 0 1 N N N N N N 24.511 4.294 21.803 -0.168 -3.994 -1.173 C22 A1IMY 29 A1IMY C26 C23 C 0 1 N N N N N N 23.497 3.870 19.154 -2.271 -3.554 0.817 C26 A1IMY 30 A1IMY F28 F4 F 0 1 N N N N N N 22.470 1.841 19.867 -0.594 -3.699 2.517 F28 A1IMY 31 A1IMY F29 F5 F 0 1 N N N N N N 24.681 1.918 19.980 -0.914 -5.498 1.150 F29 A1IMY 32 A1IMY O31 O3 O 0 1 N N N N N N 21.867 5.543 23.391 0.869 -1.042 -1.705 O31 A1IMY 33 A1IMY N32 N3 N 0 1 N N N N N N 21.108 3.562 23.980 2.515 -1.464 -0.278 N32 A1IMY 34 A1IMY N36 N4 N 0 1 N N N N N N 21.246 3.386 27.380 3.366 -2.951 -2.299 N36 A1IMY 35 A1IMY C41 C24 C 0 1 N N N N N N 17.456 8.624 26.643 6.782 3.046 2.025 C41 A1IMY 36 A1IMY C42 C25 C 0 1 N N N N N N 18.419 7.902 24.424 7.324 1.640 0.019 C42 A1IMY 37 A1IMY N43 N5 N 0 1 N N N N N N 16.643 6.551 25.555 5.138 2.750 0.221 N43 A1IMY 38 A1IMY C44 C26 C 0 1 N N N N N N 16.938 5.241 25.701 4.087 1.928 0.056 C44 A1IMY 39 A1IMY O45 O4 O 0 1 N N N N N N 16.170 4.311 25.520 3.067 2.214 -0.534 O45 A1IMY 40 A1IMY H1 H1 H 0 1 N N N N N N 21.448 7.255 19.433 -3.100 -0.430 -1.509 H1 A1IMY 41 A1IMY H2 H2 H 0 1 N N N N N N 21.103 7.667 17.024 -5.444 -0.116 -1.095 H2 A1IMY 42 A1IMY H3 H3 H 0 1 N N N N N N 19.858 5.244 15.654 -6.994 -1.008 0.581 H3 A1IMY 43 A1IMY H4 H4 H 0 1 N N N N N N 20.936 6.487 14.933 -6.129 -0.155 1.931 H4 A1IMY 44 A1IMY H5 H5 H 0 1 N N N N N N 21.311 3.065 21.511 0.405 -1.705 1.343 H5 A1IMY 45 A1IMY H6 H6 H 0 1 N N N N N N 25.107 5.898 20.449 -2.210 -4.301 -1.782 H6 A1IMY 46 A1IMY H7 H7 H 0 1 N N N N N N 23.811 6.352 21.607 -1.458 -2.831 -2.446 H7 A1IMY 47 A1IMY H8 H8 H 0 1 N N N N N N 22.982 5.989 19.213 -3.092 -2.208 -0.684 H8 A1IMY 48 A1IMY H9 H9 H 0 1 N N N N N N 21.166 4.929 25.588 3.069 0.072 -1.594 H9 A1IMY 49 A1IMY H10 H10 H 0 1 N N N N N N 20.534 1.907 26.105 4.612 -1.486 -2.998 H10 A1IMY 50 A1IMY H12 H12 H 0 1 N N N N N N 19.173 5.085 24.096 5.133 -1.341 0.154 H12 A1IMY 51 A1IMY H13 H13 H 0 1 N N N N N N 18.642 3.468 24.672 5.501 -0.041 -1.005 H13 A1IMY 52 A1IMY H14 H14 H 0 1 N N N N N N 18.445 4.427 26.990 3.498 0.261 1.284 H14 A1IMY 53 A1IMY H15 H15 H 0 1 N N N N N N 19.868 6.654 26.020 5.218 1.121 2.654 H15 A1IMY 54 A1IMY H16 H16 H 0 1 N N N N N N 18.883 6.628 27.521 6.245 0.023 1.672 H16 A1IMY 55 A1IMY H17 H17 H 0 1 N N N N N N 18.522 6.942 20.045 -3.022 1.864 -1.858 H17 A1IMY 56 A1IMY H18 H18 H 0 1 N N N N N N 19.281 5.470 18.198 -3.873 -1.157 0.756 H18 A1IMY 57 A1IMY H19 H19 H 0 1 N N N N N N 21.042 5.221 17.947 -3.682 0.516 1.333 H19 A1IMY 58 A1IMY H20 H20 H 0 1 N N N N N N 19.054 7.938 14.511 -7.745 1.110 -0.398 H20 A1IMY 59 A1IMY H21 H21 H 0 1 N N N N N N 17.965 6.616 15.053 -7.563 1.731 1.299 H21 A1IMY 60 A1IMY H22 H22 H 0 1 N N N N N N 19.011 8.833 16.788 -5.174 2.183 0.972 H22 A1IMY 61 A1IMY H23 H23 H 0 1 N N N N N N 18.085 7.406 17.365 -5.640 2.307 -0.780 H23 A1IMY 62 A1IMY H24 H24 H 0 1 N N N N N N 23.570 2.398 22.277 1.151 -3.952 0.543 H24 A1IMY 63 A1IMY H25 H25 H 0 1 N N N N N N 25.494 3.896 21.513 -0.169 -5.082 -1.232 H25 A1IMY 64 A1IMY H26 H26 H 0 1 N N N N N N 24.525 4.565 22.869 0.579 -3.596 -1.860 H26 A1IMY 65 A1IMY H27 H27 H 0 1 N N N N N N 22.740 3.680 18.379 -2.687 -2.987 1.650 H27 A1IMY 66 A1IMY H28 H28 H 0 1 N N N N N N 24.484 3.987 18.682 -2.936 -4.384 0.576 H28 A1IMY 67 A1IMY H29 H29 H 0 1 N N N N N N 20.987 2.601 23.733 2.799 -1.876 0.552 H29 A1IMY 68 A1IMY H30 H30 H 0 1 N N N N N N 21.355 2.661 28.061 3.617 -3.567 -3.005 H30 A1IMY 69 A1IMY H33 H33 H 0 1 N N N N N N 17.040 8.271 27.598 7.532 2.525 2.620 H33 A1IMY 70 A1IMY H34 H34 H 0 1 N N N N N N 18.353 9.231 26.836 7.241 3.903 1.533 H34 A1IMY 71 A1IMY H35 H35 H 0 1 N N N N N N 16.706 9.235 26.120 5.977 3.389 2.675 H35 A1IMY 72 A1IMY H36 H36 H 0 1 N N N N N N 19.295 8.540 24.613 6.902 0.990 -0.748 H36 A1IMY 73 A1IMY H37 H37 H 0 1 N N N N N N 18.722 7.032 23.823 7.778 2.511 -0.454 H37 A1IMY 74 A1IMY H38 H38 H 0 1 N N N N N N 17.657 8.477 23.877 8.083 1.094 0.579 H38 A1IMY 75 A1IMY H39 H39 H 0 1 N N N N N N 15.732 6.897 25.328 5.178 3.660 -0.113 H39 A1IMY 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IMY C13 C12 SING N N 1 A1IMY C13 C14 SING N N 2 A1IMY C12 C11 SING N N 3 A1IMY C14 C11 SING N N 4 A1IMY C11 C10 SING N N 5 A1IMY C10 C8 SING N N 6 A1IMY F3 C2 SING N N 7 A1IMY C26 C24 SING N N 8 A1IMY C26 C27 SING N N 9 A1IMY C8 N7 SING N N 10 A1IMY C8 C15 SING N N 11 A1IMY O6 C5 DOUB N N 12 A1IMY N7 C5 SING N N 13 A1IMY F28 C27 SING N N 14 A1IMY C5 C2 SING N N 15 A1IMY C24 N17 SING N N 16 A1IMY C24 C23 SING N N 17 A1IMY F29 C27 SING N N 18 A1IMY C27 C20 SING N N 19 A1IMY C2 F1 SING N N 20 A1IMY C2 F4 SING N N 21 A1IMY C15 N17 SING N N 22 A1IMY C15 O16 DOUB N N 23 A1IMY N17 C18 SING N N 24 A1IMY C23 C22 SING N N 25 A1IMY C20 C18 SING N N 26 A1IMY C20 C22 SING N N 27 A1IMY C18 C30 SING N N 28 A1IMY C30 O31 DOUB N N 29 A1IMY C30 N32 SING N N 30 A1IMY N32 C33 SING N N 31 A1IMY C42 C40 SING N N 32 A1IMY C37 C33 SING N N 33 A1IMY C37 C38 SING N N 34 A1IMY C33 C35 SING N N 35 A1IMY O45 C44 DOUB N N 36 A1IMY N43 C44 SING N N 37 A1IMY N43 C40 SING N N 38 A1IMY C44 C38 SING N N 39 A1IMY C40 C39 SING N N 40 A1IMY C40 C41 SING N N 41 A1IMY C38 C39 SING N N 42 A1IMY C35 N36 DOUB N N 43 A1IMY C8 H1 SING N N 44 A1IMY C11 H2 SING N N 45 A1IMY C12 H3 SING N N 46 A1IMY C12 H4 SING N N 47 A1IMY C18 H5 SING N N 48 A1IMY C23 H6 SING N N 49 A1IMY C23 H7 SING N N 50 A1IMY C24 H8 SING N N 51 A1IMY C33 H9 SING N N 52 A1IMY C35 H10 SING N N 53 A1IMY C37 H12 SING N N 54 A1IMY C37 H13 SING N N 55 A1IMY C38 H14 SING N N 56 A1IMY C39 H15 SING N N 57 A1IMY C39 H16 SING N N 58 A1IMY N7 H17 SING N N 59 A1IMY C10 H18 SING N N 60 A1IMY C10 H19 SING N N 61 A1IMY C13 H20 SING N N 62 A1IMY C13 H21 SING N N 63 A1IMY C14 H22 SING N N 64 A1IMY C14 H23 SING N N 65 A1IMY C20 H24 SING N N 66 A1IMY C22 H25 SING N N 67 A1IMY C22 H26 SING N N 68 A1IMY C26 H27 SING N N 69 A1IMY C26 H28 SING N N 70 A1IMY N32 H29 SING N N 71 A1IMY N36 H30 SING N N 72 A1IMY C41 H33 SING N N 73 A1IMY C41 H34 SING N N 74 A1IMY C41 H35 SING N N 75 A1IMY C42 H36 SING N N 76 A1IMY C42 H37 SING N N 77 A1IMY C42 H38 SING N N 78 A1IMY N43 H39 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IMY InChI InChI 1.06 "InChI=1S/C26H36F5N5O4/c1-24(2)10-14(20(37)35-24)9-15(12-32)33-21(38)19-17-7-6-16(11-25(17,27)28)36(19)22(39)18(8-13-4-3-5-13)34-23(40)26(29,30)31/h12-19,32H,3-11H2,1-2H3,(H,33,38)(H,34,40)(H,35,37)/t14-,15-,16-,17-,18+,19-/m0/s1" A1IMY InChIKey InChI 1.06 KLQWCIBSZOJHLB-VIUKOLAESA-N A1IMY SMILES_CANONICAL CACTVS 3.385 "CC1(C)C[C@H](C[C@H](NC(=O)[C@@H]2[C@@H]3CC[C@@H](CC3(F)F)N2C(=O)[C@@H](CC4CCC4)NC(=O)C(F)(F)F)C=N)C(=O)N1" A1IMY SMILES CACTVS 3.385 "CC1(C)C[CH](C[CH](NC(=O)[CH]2[CH]3CC[CH](CC3(F)F)N2C(=O)[CH](CC4CCC4)NC(=O)C(F)(F)F)C=N)C(=O)N1" A1IMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C[C@@H](C(=O)N1)C[C@@H](C=N)NC(=O)[C@@H]2[C@@H]3CC[C@H](N2C(=O)[C@@H](CC4CCC4)NC(=O)C(F)(F)F)CC3(F)F)C" A1IMY SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CC(C(=O)N1)CC(C=N)NC(=O)C2C3CCC(N2C(=O)C(CC4CCC4)NC(=O)C(F)(F)F)CC3(F)F)C" # _pdbx_chem_comp_identifier.comp_id A1IMY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},3~{S},4~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-5,5-dimethyl-2-oxidanylidene-pyrrolidin-3-yl]propan-2-yl]-2-[(2~{R})-3-cyclobutyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]propanoyl]-5,5-bis(fluoranyl)-2-azabicyclo[2.2.2]octane-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IMY "Create component" 2024-08-28 PDBE A1IMY "Modify PCM" 2024-09-27 PDBE A1IMY "Initial release" 2024-12-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IMY _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C35 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #