data_A1INK # _chem_comp.id A1INK _chem_comp.name "2-cyclohexyl-1,19-dimethoxy-11,18-dioxa-1lambda5,19lambda5-diphospha-2-stannatetracyclo[18.2.1.01,6.06,10]tricosane-3,12-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H42 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-11 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.678 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1INK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GPK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1INK C4 C1 C 0 1 Y N N N N N -5.955 -17.473 -19.798 2.027 1.037 0.407 C4 A1INK 1 A1INK C14 C2 C 0 1 N N N N N N -10.827 -17.158 -18.562 -6.044 -1.501 0.382 C14 A1INK 2 A1INK C5 C3 C 0 1 Y N N N N N -6.425 -18.638 -19.250 0.775 1.525 0.089 C5 A1INK 3 A1INK C6 C4 C 0 1 Y N N N N N -6.615 -18.735 -17.884 0.574 2.891 -0.051 C6 A1INK 4 A1INK C11 C5 C 0 1 N N N N N N -9.429 -21.925 -17.682 -4.222 3.109 -0.320 C11 A1INK 5 A1INK C7 C6 C 0 1 Y N N N N N -6.372 -17.635 -17.070 1.635 3.768 0.133 C7 A1INK 6 A1INK C8 C7 C 0 1 N N N N N N -7.627 -17.453 -15.110 1.065 5.828 1.177 C8 A1INK 7 A1INK C9 C8 C 0 1 N N N N N N -7.085 -21.139 -17.853 -1.796 2.625 0.041 C9 A1INK 8 A1INK C10 C9 C 0 1 N N N N N N -8.040 -22.017 -17.092 -2.901 2.765 -1.008 C10 A1INK 9 A1INK C12 C10 C 0 1 Y N N N N N -10.027 -19.645 -18.593 -4.807 0.727 0.205 C12 A1INK 10 A1INK C13 C11 C 0 1 Y N N N N N -10.516 -18.503 -17.996 -5.886 -0.058 -0.025 C13 A1INK 11 A1INK N1 N1 N 0 1 Y N N N N N -9.963 -20.566 -17.614 -5.100 1.935 -0.330 N1 A1INK 12 A1INK N2 N2 N 0 1 Y N N N N N -10.625 -18.753 -16.664 -6.773 0.698 -0.680 N2 A1INK 13 A1INK C3 C12 C 0 1 Y N N N N N -5.752 -16.355 -18.998 3.085 1.911 0.586 C3 A1INK 14 A1INK N3 N3 N 0 1 Y N N N N N -10.264 -20.000 -16.415 -6.277 1.874 -0.847 N3 A1INK 15 A1INK C1 C13 C 0 1 N N N N N N -5.136 -14.258 -17.245 5.203 3.555 0.958 C1 A1INK 16 A1INK O1 O1 O 0 1 N N N N N N -5.620 -15.460 -16.716 3.937 4.133 0.631 O1 A1INK 17 A1INK C2 C14 C 0 1 Y N N N N N -5.908 -16.442 -17.621 2.896 3.277 0.452 C2 A1INK 18 A1INK O2 O2 O 0 1 N N N N N N -6.384 -17.853 -15.684 1.440 5.108 0.001 O2 A1INK 19 A1INK O3 O3 O 0 1 N N N N N N -6.966 -19.872 -17.178 -0.654 3.378 -0.371 O3 A1INK 20 A1INK C15 C15 C 0 1 N N N N N N -9.839 -16.117 -18.060 -4.910 -2.328 -0.223 C15 A1INK 21 A1INK C16 C16 C 0 1 N N N N N N -9.724 -14.902 -18.952 -3.724 -2.374 0.744 C16 A1INK 22 A1INK O4 O4 O 0 1 N N N N N N -9.036 -15.316 -20.184 -2.486 -2.334 -0.013 O4 A1INK 23 A1INK C17 C17 C 0 1 N N N N N N -9.251 -14.559 -21.270 -1.499 -3.159 0.370 C17 A1INK 24 A1INK O5 O5 O 0 1 N N N N N N -9.917 -13.575 -21.307 -1.639 -3.870 1.337 O5 A1INK 25 A1INK C18 C18 C 0 1 N N S N N N -8.646 -15.191 -22.520 -0.218 -3.187 -0.424 C18 A1INK 26 A1INK C19 C19 C 0 1 N N N N N N -9.803 -15.563 -23.459 0.237 -4.625 -0.651 C19 A1INK 27 A1INK C20 C20 C 0 1 N N N N N N -10.589 -16.737 -23.012 0.734 -5.243 0.656 C20 A1INK 28 A1INK C21 C21 C 0 1 N N N N N N -9.692 -17.922 -22.834 1.931 -4.437 1.166 C21 A1INK 29 A1INK C22 C22 C 0 1 N N N N N N -8.558 -17.628 -21.882 1.476 -3.005 1.459 C22 A1INK 30 A1INK N4 N4 N 0 1 N N N N N N -7.830 -16.378 -22.204 0.825 -2.439 0.278 N4 A1INK 31 A1INK C23 C23 C 0 1 N N N N N N -6.532 -16.198 -21.868 1.182 -1.213 -0.163 C23 A1INK 32 A1INK O6 O6 O 0 1 N N N N N N -5.987 -15.085 -21.907 0.645 -0.736 -1.140 O6 A1INK 33 A1INK C24 C24 C 0 1 N N S N N N -5.762 -17.394 -21.315 2.251 -0.443 0.567 C24 A1INK 34 A1INK C25 C25 C 0 1 N N N N N N -4.266 -17.302 -21.660 3.622 -0.813 -0.004 C25 A1INK 35 A1INK C26 C26 C 0 1 N N N N N N -3.387 -18.340 -20.991 3.871 -2.309 0.198 C26 A1INK 36 A1INK C27 C27 C 0 1 N N N N N N -1.918 -18.281 -21.402 5.241 -2.679 -0.373 C27 A1INK 37 A1INK C28 C28 C 0 1 N N N N N N -1.775 -18.459 -22.890 5.277 -2.352 -1.867 C28 A1INK 38 A1INK C29 C29 C 0 1 N N N N N N -2.606 -17.364 -23.500 5.027 -0.856 -2.069 C29 A1INK 39 A1INK C30 C30 C 0 1 N N N N N N -4.035 -17.448 -23.172 3.657 -0.486 -1.498 C30 A1INK 40 A1INK H17 H1 H 0 1 N N N N N N -11.843 -16.866 -18.259 -6.010 -1.578 1.468 H17 A1INK 41 A1INK H16 H2 H 0 1 N N N N N N -10.772 -17.207 -19.659 -7.001 -1.878 0.020 H16 A1INK 42 A1INK H5 H3 H 0 1 N N N N N N -6.647 -19.482 -19.886 -0.049 0.841 -0.053 H5 A1INK 43 A1INK H14 H4 H 0 1 N N N N N N -10.097 -22.598 -17.124 -4.028 3.408 0.710 H14 A1INK 44 A1INK H13 H5 H 0 1 N N N N N N -9.389 -22.239 -18.736 -4.705 3.929 -0.851 H13 A1INK 45 A1INK H7 H6 H 0 1 N N N N N N -7.606 -17.636 -14.025 0.942 6.884 0.933 H7 A1INK 46 A1INK H8 H7 H 0 1 N N N N N N -7.790 -16.382 -15.298 0.125 5.432 1.561 H8 A1INK 47 A1INK H6 H8 H 0 1 N N N N N N -8.444 -18.033 -15.564 1.842 5.719 1.933 H6 A1INK 48 A1INK H9 H9 H 0 1 N N N N N N -7.466 -20.978 -18.872 -2.153 3.002 0.999 H9 A1INK 49 A1INK H10 H10 H 0 1 N N N N N N -6.099 -21.624 -17.902 -1.521 1.574 0.142 H10 A1INK 50 A1INK H11 H11 H 0 1 N N N N N N -7.693 -23.060 -17.144 -3.007 1.826 -1.551 H11 A1INK 51 A1INK H12 H12 H 0 1 N N N N N N -8.071 -21.693 -16.041 -2.638 3.560 -1.707 H12 A1INK 52 A1INK H15 H13 H 0 1 N N N N N N -9.753 -19.774 -19.630 -3.897 0.446 0.714 H15 A1INK 53 A1INK H4 H14 H 0 1 N N N N N N -5.472 -15.415 -19.449 4.064 1.527 0.832 H4 A1INK 54 A1INK H2 H15 H 0 1 N N N N N N -4.941 -13.549 -16.427 5.512 2.882 0.159 H2 A1INK 55 A1INK H3 H16 H 0 1 N N N N N N -4.202 -14.449 -17.795 5.944 4.346 1.074 H3 A1INK 56 A1INK H1 H17 H 0 1 N N N N N N -5.884 -13.831 -17.930 5.118 2.998 1.890 H1 A1INK 57 A1INK H19 H18 H 0 1 N N N N N N -8.848 -16.588 -17.986 -5.262 -3.342 -0.412 H19 A1INK 58 A1INK H18 H19 H 0 1 N N N N N N -10.163 -15.785 -17.062 -4.592 -1.874 -1.162 H18 A1INK 59 A1INK H21 H20 H 0 1 N N N N N N -9.143 -14.118 -18.444 -3.768 -1.515 1.415 H21 A1INK 60 A1INK H20 H21 H 0 1 N N N N N N -10.726 -14.518 -19.193 -3.765 -3.293 1.327 H20 A1INK 61 A1INK H22 H22 H 0 1 N N N N N N -8.017 -14.442 -23.022 -0.397 -2.711 -1.394 H22 A1INK 62 A1INK H24 H23 H 0 1 N N N N N N -9.385 -15.785 -24.452 -0.600 -5.211 -1.030 H24 A1INK 63 A1INK H23 H24 H 0 1 N N N N N N -10.481 -14.700 -23.531 1.043 -4.636 -1.384 H23 A1INK 64 A1INK H25 H25 H 0 1 N N N N N N -11.078 -16.504 -22.054 -0.064 -5.219 1.397 H25 A1INK 65 A1INK H26 H26 H 0 1 N N N N N N -11.354 -16.971 -23.767 1.038 -6.274 0.479 H26 A1INK 66 A1INK H27 H27 H 0 1 N N N N N N -10.283 -18.760 -22.436 2.315 -4.891 2.080 H27 A1INK 67 A1INK H28 H28 H 0 1 N N N N N N -9.273 -18.201 -23.812 2.713 -4.423 0.407 H28 A1INK 68 A1INK H29 H29 H 0 1 N N N N N N -8.970 -17.540 -20.866 0.773 -3.012 2.292 H29 A1INK 69 A1INK H30 H30 H 0 1 N N N N N N -7.846 -18.466 -21.918 2.341 -2.396 1.720 H30 A1INK 70 A1INK H31 H31 H 0 1 N N N N N N -6.167 -18.311 -21.767 2.222 -0.700 1.626 H31 A1INK 71 A1INK H32 H32 H 0 1 N N N N N N -3.910 -16.306 -21.358 4.395 -0.243 0.511 H32 A1INK 72 A1INK H33 H33 H 0 1 N N N N N N -3.446 -18.191 -19.903 3.845 -2.541 1.262 H33 A1INK 73 A1INK H34 H34 H 0 1 N N N N N N -3.776 -19.337 -21.246 3.097 -2.878 -0.317 H34 A1INK 74 A1INK H36 H35 H 0 1 N N N N N N -1.367 -19.082 -20.888 6.015 -2.109 0.142 H36 A1INK 75 A1INK H35 H36 H 0 1 N N N N N N -1.501 -17.305 -21.113 5.419 -3.745 -0.230 H35 A1INK 76 A1INK H38 H37 H 0 1 N N N N N N -2.151 -19.446 -23.198 6.253 -2.616 -2.274 H38 A1INK 77 A1INK H37 H38 H 0 1 N N N N N N -0.722 -18.357 -23.191 4.503 -2.922 -2.382 H37 A1INK 78 A1INK H40 H39 H 0 1 N N N N N N -2.498 -17.416 -24.593 5.801 -0.287 -1.554 H40 A1INK 79 A1INK H39 H40 H 0 1 N N N N N N -2.224 -16.398 -23.139 5.053 -0.624 -3.133 H39 A1INK 80 A1INK H41 H41 H 0 1 N N N N N N -4.572 -16.644 -23.697 2.883 -1.056 -2.013 H41 A1INK 81 A1INK H42 H42 H 0 1 N N N N N N -4.422 -18.423 -23.502 3.479 0.580 -1.641 H42 A1INK 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1INK C29 C30 SING N N 1 A1INK C29 C28 SING N N 2 A1INK C19 C20 SING N N 3 A1INK C19 C18 SING N N 4 A1INK C30 C25 SING N N 5 A1INK C20 C21 SING N N 6 A1INK C28 C27 SING N N 7 A1INK C21 C22 SING N N 8 A1INK C18 N4 SING N N 9 A1INK C18 C17 SING N N 10 A1INK N4 C22 SING N N 11 A1INK N4 C23 SING N N 12 A1INK O6 C23 DOUB N N 13 A1INK C23 C24 SING N N 14 A1INK C25 C24 SING N N 15 A1INK C25 C26 SING N N 16 A1INK C27 C26 SING N N 17 A1INK C24 C4 SING N N 18 A1INK O5 C17 DOUB N N 19 A1INK C17 O4 SING N N 20 A1INK O4 C16 SING N N 21 A1INK C4 C5 DOUB Y N 22 A1INK C4 C3 SING Y N 23 A1INK C5 C6 SING Y N 24 A1INK C3 C2 DOUB Y N 25 A1INK C16 C15 SING N N 26 A1INK C12 C13 DOUB Y N 27 A1INK C12 N1 SING Y N 28 A1INK C14 C15 SING N N 29 A1INK C14 C13 SING N N 30 A1INK C13 N2 SING Y N 31 A1INK C6 O3 SING N N 32 A1INK C6 C7 DOUB Y N 33 A1INK C9 O3 SING N N 34 A1INK C9 C10 SING N N 35 A1INK C11 N1 SING N N 36 A1INK C11 C10 SING N N 37 A1INK C2 C7 SING Y N 38 A1INK C2 O1 SING N N 39 A1INK N1 N3 SING Y N 40 A1INK C1 O1 SING N N 41 A1INK C7 O2 SING N N 42 A1INK N2 N3 DOUB Y N 43 A1INK O2 C8 SING N N 44 A1INK C14 H17 SING N N 45 A1INK C14 H16 SING N N 46 A1INK C5 H5 SING N N 47 A1INK C11 H14 SING N N 48 A1INK C11 H13 SING N N 49 A1INK C8 H7 SING N N 50 A1INK C8 H8 SING N N 51 A1INK C8 H6 SING N N 52 A1INK C9 H9 SING N N 53 A1INK C9 H10 SING N N 54 A1INK C10 H11 SING N N 55 A1INK C10 H12 SING N N 56 A1INK C12 H15 SING N N 57 A1INK C3 H4 SING N N 58 A1INK C1 H2 SING N N 59 A1INK C1 H3 SING N N 60 A1INK C1 H1 SING N N 61 A1INK C15 H19 SING N N 62 A1INK C15 H18 SING N N 63 A1INK C16 H21 SING N N 64 A1INK C16 H20 SING N N 65 A1INK C18 H22 SING N N 66 A1INK C19 H24 SING N N 67 A1INK C19 H23 SING N N 68 A1INK C20 H25 SING N N 69 A1INK C20 H26 SING N N 70 A1INK C21 H27 SING N N 71 A1INK C21 H28 SING N N 72 A1INK C22 H29 SING N N 73 A1INK C22 H30 SING N N 74 A1INK C24 H31 SING N N 75 A1INK C25 H32 SING N N 76 A1INK C26 H33 SING N N 77 A1INK C26 H34 SING N N 78 A1INK C27 H36 SING N N 79 A1INK C27 H35 SING N N 80 A1INK C28 H38 SING N N 81 A1INK C28 H37 SING N N 82 A1INK C29 H40 SING N N 83 A1INK C29 H39 SING N N 84 A1INK C30 H41 SING N N 85 A1INK C30 H42 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1INK InChI InChI 1.06 "InChI=1S/C30H42N4O6/c1-37-25-18-22-19-26(28(25)38-2)39-17-9-14-33-20-23(31-32-33)12-8-16-40-30(36)24-13-6-7-15-34(24)29(35)27(22)21-10-4-3-5-11-21/h18-21,24,27H,3-17H2,1-2H3/t24-,27-/m0/s1" A1INK InChIKey InChI 1.06 KBEFRQWYVBCTFI-IGKIAQTJSA-N A1INK SMILES_CANONICAL CACTVS 3.385 "COc1cc2cc(OCCCn3cc(CCCOC(=O)[C@@H]4CCCCN4C(=O)[C@H]2C5CCCCC5)nn3)c1OC" A1INK SMILES CACTVS 3.385 "COc1cc2cc(OCCCn3cc(CCCOC(=O)[CH]4CCCCN4C(=O)[CH]2C5CCCCC5)nn3)c1OC" A1INK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2cc(c1OC)OCCCn3cc(nn3)CCCOC(=O)[C@@H]4CCCCN4C(=O)[C@H]2C5CCCCC5" A1INK SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2cc(c1OC)OCCCn3cc(nn3)CCCOC(=O)C4CCCCN4C(=O)C2C5CCCCC5" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1INK "Create component" 2024-09-11 PDBE A1INK "Initial release" 2025-01-15 RCSB #