data_A1INX # _chem_comp.id A1INX _chem_comp.name "3-cyclohexyl-17-hydroxy-16,17-dimethoxy-12-methyl-15,18-dioxa-5-aza-1lambda5,17lambda5-diphosphapentacyclo[17.3.1.01,10.05,10.011,19]tricosa-10,19(23)-diene-4,11-quinone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H46 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-11 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.731 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1INX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GPX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1INX C4 C1 C 0 1 Y N N N N N 5.964 17.737 -19.867 2.243 1.103 0.398 C4 A1INX 1 A1INX C14 C2 C 0 1 Y N N N N N 10.613 18.677 -18.330 -5.649 -0.291 0.196 C14 A1INX 2 A1INX C5 C3 C 0 1 Y N N N N N 6.444 18.910 -19.279 0.979 1.500 0.006 C5 A1INX 3 A1INX C6 C4 C 0 1 Y N N N N N 6.652 18.971 -17.918 0.693 2.846 -0.160 C6 A1INX 4 A1INX C11 C5 C 0 1 N N R N N N 9.626 22.112 -17.915 -4.130 2.943 -0.150 C11 A1INX 5 A1INX C7 C6 C 0 1 Y N N N N N 6.320 17.886 -17.107 1.679 3.798 0.072 C7 A1INX 6 A1INX C8 C7 C 0 1 N N N N N N 7.839 17.874 -15.314 0.914 5.823 1.058 C8 A1INX 7 A1INX C9 C8 C 0 1 N N N N N N 7.091 21.387 -17.780 -1.665 2.588 0.061 C9 A1INX 8 A1INX C10 C9 C 0 1 N N N N N N 8.219 22.240 -17.246 -2.849 2.590 -0.908 C10 A1INX 9 A1INX C12 C10 C 0 1 N N N N N N 10.619 23.064 -17.209 -4.881 4.043 -0.903 C12 A1INX 10 A1INX C13 C11 C 0 1 Y N N N N N 10.149 19.836 -18.895 -4.545 0.492 0.188 C13 A1INX 11 A1INX N1 N1 N 0 1 Y N N N N N 10.131 20.729 -17.914 -4.979 1.752 -0.047 N1 A1INX 12 A1INX N2 N2 N 0 1 Y N N N N N 10.840 18.898 -17.020 -6.690 0.519 -0.029 N2 A1INX 13 A1INX C3 C12 C 0 1 Y N N N N N 5.627 16.645 -19.077 3.228 2.047 0.626 C3 A1INX 14 A1INX N3 N3 N 0 1 Y N N N N N 10.545 20.146 -16.768 -6.259 1.724 -0.167 N3 A1INX 15 A1INX C1 C13 C 0 1 N N N N N N 5.258 14.455 -17.339 5.201 3.836 1.090 C1 A1INX 16 A1INX O1 O1 O 0 1 N N N N N N 5.567 15.706 -16.809 3.919 4.322 0.690 O1 A1INX 17 A1INX C2 C14 C 0 1 Y N N N N N 5.863 16.706 -17.690 2.950 3.395 0.465 C2 A1INX 18 A1INX O2 O2 O 0 1 N N N N N N 6.481 17.997 -15.725 1.402 5.121 -0.087 O2 A1INX 19 A1INX O3 O3 O 0 1 N N N N N N 7.193 20.050 -17.247 -0.549 3.239 -0.547 O3 A1INX 20 A1INX C15 C15 C 0 1 N N N N N N 10.860 17.339 -18.913 -5.697 -1.781 0.421 C15 A1INX 21 A1INX C16 C16 C 0 1 N N S N N N 9.933 16.275 -18.327 -4.526 -2.446 -0.305 C16 A1INX 22 A1INX C17 C17 C 0 1 N N N N N N 10.551 15.707 -17.022 -4.957 -3.823 -0.812 C17 A1INX 23 A1INX C18 C18 C 0 1 N N N N N N 9.739 15.185 -19.370 -3.349 -2.603 0.661 C18 A1INX 24 A1INX O4 O4 O 0 1 N N N N N N 9.074 15.696 -20.536 -2.105 -2.493 -0.079 O4 A1INX 25 A1INX C19 C19 C 0 1 N N N N N N 9.221 14.994 -21.653 -1.074 -3.266 0.299 C19 A1INX 26 A1INX O5 O5 O 0 1 N N N N N N 9.817 13.973 -21.716 -1.183 -4.002 1.251 O5 A1INX 27 A1INX C20 C20 C 0 1 N N S N N N 8.572 15.669 -22.853 0.229 -3.220 -0.459 C20 A1INX 28 A1INX C21 C21 C 0 1 N N N N N N 9.658 16.053 -23.833 0.772 -4.636 -0.639 C21 A1INX 29 A1INX C22 C22 C 0 1 N N N N N N 10.524 17.153 -23.372 1.205 -5.205 0.713 C22 A1INX 30 A1INX C23 C23 C 0 1 N N N N N N 9.675 18.395 -23.063 2.322 -4.335 1.294 C23 A1INX 31 A1INX C24 C24 C 0 1 N N N N N N 8.531 18.037 -22.120 1.790 -2.918 1.520 C24 A1INX 32 A1INX N4 N4 N 0 1 N N N N N N 7.789 16.840 -22.431 1.201 -2.410 0.279 N4 A1INX 33 A1INX C25 C25 C 0 1 N N N N N N 6.533 16.598 -21.977 1.549 -1.191 -0.182 C25 A1INX 34 A1INX O6 O6 O 0 1 N N N N N N 6.061 15.455 -21.939 1.053 -0.763 -1.202 O6 A1INX 35 A1INX C26 C26 C 0 1 N N S N N N 5.728 17.716 -21.378 2.555 -0.361 0.573 C26 A1INX 36 A1INX C27 C27 C 0 1 N N N N N N 4.219 17.640 -21.658 3.958 -0.650 0.036 C27 A1INX 37 A1INX C28 C28 C 0 1 N N N N N N 3.904 17.703 -23.152 4.009 -0.325 -1.458 C28 A1INX 38 A1INX C29 C29 C 0 1 N N N N N N 2.440 17.717 -23.491 5.413 -0.613 -1.995 C29 A1INX 39 A1INX C30 C30 C 0 1 N N N N N N 1.609 18.721 -22.730 5.746 -2.092 -1.783 C30 A1INX 40 A1INX C31 C31 C 0 1 N N N N N N 1.972 18.636 -21.271 5.694 -2.417 -0.289 C31 A1INX 41 A1INX C32 C32 C 0 1 N N N N N N 3.448 18.754 -20.991 4.291 -2.128 0.248 C32 A1INX 42 A1INX H5 H1 H 0 1 N N N N N N 6.653 19.773 -19.894 0.213 0.760 -0.172 H5 A1INX 43 A1INX H13 H2 H 0 1 N N N N N N 9.527 22.448 -18.958 -3.875 3.295 0.850 H13 A1INX 44 A1INX H7 H3 H 0 1 N N N N N N 7.902 17.970 -14.220 1.653 5.773 1.858 H7 A1INX 45 A1INX H8 H4 H 0 1 N N N N N N 8.227 16.891 -15.619 0.734 6.865 0.796 H8 A1INX 46 A1INX H6 H5 H 0 1 N N N N N N 8.438 18.667 -15.786 -0.017 5.367 1.395 H6 A1INX 47 A1INX H9 H6 H 0 1 N N N N N N 7.151 21.348 -18.878 -1.941 3.117 0.973 H9 A1INX 48 A1INX H10 H7 H 0 1 N N N N N N 6.128 21.827 -17.481 -1.397 1.560 0.305 H10 A1INX 49 A1INX H12 H8 H 0 1 N N N N N N 8.341 21.990 -16.182 -2.953 1.602 -1.356 H12 A1INX 50 A1INX H11 H9 H 0 1 N N N N N N 7.907 23.290 -17.343 -2.675 3.327 -1.692 H11 A1INX 51 A1INX H15 H10 H 0 1 N N N N N N 10.219 24.089 -17.223 -5.795 4.293 -0.363 H15 A1INX 52 A1INX H16 H11 H 0 1 N N N N N N 10.760 22.740 -16.167 -4.250 4.928 -0.979 H16 A1INX 53 A1INX H14 H12 H 0 1 N N N N N N 11.585 23.041 -17.734 -5.135 3.690 -1.903 H14 A1INX 54 A1INX H17 H13 H 0 1 N N N N N N 9.859 19.990 -19.924 -3.524 0.175 0.338 H17 A1INX 55 A1INX H4 H14 H 0 1 N N N N N N 5.190 15.762 -19.520 4.216 1.733 0.930 H4 A1INX 56 A1INX H2 H15 H 0 1 N N N N N N 5.043 13.752 -16.520 5.879 4.677 1.237 H2 A1INX 57 A1INX H3 H16 H 0 1 N N N N N N 4.376 14.541 -17.990 5.104 3.281 2.024 H3 A1INX 58 A1INX H1 H17 H 0 1 N N N N N N 6.112 14.084 -17.925 5.598 3.179 0.317 H1 A1INX 59 A1INX H18 H18 H 0 1 N N N N N N 10.698 17.391 -20.000 -5.629 -1.990 1.488 H18 A1INX 60 A1INX H19 H19 H 0 1 N N N N N N 11.902 17.051 -18.711 -6.636 -2.176 0.033 H19 A1INX 61 A1INX H20 H20 H 0 1 N N N N N N 8.960 16.731 -18.092 -4.223 -1.826 -1.149 H20 A1INX 62 A1INX H23 H21 H 0 1 N N N N N N 10.677 16.520 -16.292 -5.794 -3.711 -1.501 H23 A1INX 63 A1INX H21 H22 H 0 1 N N N N N N 9.883 14.939 -16.604 -4.122 -4.297 -1.329 H21 A1INX 64 A1INX H22 H23 H 0 1 N N N N N N 11.531 15.259 -17.245 -5.260 -4.443 0.032 H22 A1INX 65 A1INX H25 H24 H 0 1 N N N N N N 9.132 14.377 -18.936 -3.392 -1.821 1.418 H25 A1INX 66 A1INX H24 H25 H 0 1 N N N N N N 10.723 14.789 -19.662 -3.401 -3.580 1.143 H24 A1INX 67 A1INX H26 H26 H 0 1 N N N N N N 7.902 14.944 -23.339 0.057 -2.773 -1.439 H26 A1INX 68 A1INX H28 H27 H 0 1 N N N N N N 9.180 16.361 -24.775 -0.005 -5.270 -1.066 H28 A1INX 69 A1INX H27 H28 H 0 1 N N N N N N 10.288 15.170 -24.014 1.629 -4.613 -1.313 H27 A1INX 70 A1INX H29 H29 H 0 1 N N N N N N 11.057 16.840 -22.462 0.355 -5.208 1.395 H29 A1INX 71 A1INX H30 H30 H 0 1 N N N N N N 11.253 17.397 -24.159 1.569 -6.223 0.579 H30 A1INX 72 A1INX H31 H31 H 0 1 N N N N N N 10.309 19.159 -22.589 2.655 -4.754 2.243 H31 A1INX 73 A1INX H32 H32 H 0 1 N N N N N N 9.260 18.793 -24.001 3.159 -4.302 0.596 H32 A1INX 74 A1INX H33 H33 H 0 1 N N N N N N 8.955 17.915 -21.112 1.030 -2.936 2.301 H33 A1INX 75 A1INX H34 H34 H 0 1 N N N N N N 7.823 18.878 -22.120 2.609 -2.267 1.825 H34 A1INX 76 A1INX H35 H35 H 0 1 N N N N N N 6.099 18.666 -21.791 2.514 -0.616 1.632 H35 A1INX 77 A1INX H36 H36 H 0 1 N N N N N N 3.848 16.680 -21.269 4.684 -0.034 0.567 H36 A1INX 78 A1INX H38 H37 H 0 1 N N N N N N 4.358 16.824 -23.634 3.283 -0.940 -1.989 H38 A1INX 79 A1INX H37 H38 H 0 1 N N N N N N 4.357 18.619 -23.558 3.772 0.729 -1.610 H37 A1INX 80 A1INX H39 H39 H 0 1 N N N N N N 2.342 17.939 -24.564 5.449 -0.382 -3.060 H39 A1INX 81 A1INX H40 H40 H 0 1 N N N N N N 2.034 16.715 -23.285 6.139 0.002 -1.464 H40 A1INX 82 A1INX H41 H41 H 0 1 N N N N N N 1.816 19.734 -23.105 5.019 -2.707 -2.314 H41 A1INX 83 A1INX H42 H42 H 0 1 N N N N N N 0.541 18.493 -22.860 6.745 -2.297 -2.165 H42 A1INX 84 A1INX H43 H43 H 0 1 N N N N N N 1.455 19.448 -20.739 5.931 -3.470 -0.138 H43 A1INX 85 A1INX H44 H44 H 0 1 N N N N N N 1.625 17.666 -20.886 6.420 -1.801 0.242 H44 A1INX 86 A1INX H46 H45 H 0 1 N N N N N N 3.613 18.704 -19.905 4.255 -2.359 1.313 H46 A1INX 87 A1INX H45 H46 H 0 1 N N N N N N 3.810 19.720 -21.373 3.565 -2.743 -0.283 H45 A1INX 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1INX C21 C22 SING N N 1 A1INX C21 C20 SING N N 2 A1INX C29 C28 SING N N 3 A1INX C29 C30 SING N N 4 A1INX C22 C23 SING N N 5 A1INX C28 C27 SING N N 6 A1INX C23 C24 SING N N 7 A1INX C20 N4 SING N N 8 A1INX C20 C19 SING N N 9 A1INX C30 C31 SING N N 10 A1INX N4 C24 SING N N 11 A1INX N4 C25 SING N N 12 A1INX C25 O6 DOUB N N 13 A1INX C25 C26 SING N N 14 A1INX O5 C19 DOUB N N 15 A1INX C27 C26 SING N N 16 A1INX C27 C32 SING N N 17 A1INX C19 O4 SING N N 18 A1INX C26 C4 SING N N 19 A1INX C31 C32 SING N N 20 A1INX O4 C18 SING N N 21 A1INX C4 C5 DOUB Y N 22 A1INX C4 C3 SING Y N 23 A1INX C18 C16 SING N N 24 A1INX C5 C6 SING Y N 25 A1INX C3 C2 DOUB Y N 26 A1INX C15 C14 SING N N 27 A1INX C15 C16 SING N N 28 A1INX C13 C14 DOUB Y N 29 A1INX C13 N1 SING Y N 30 A1INX C14 N2 SING Y N 31 A1INX C16 C17 SING N N 32 A1INX C6 O3 SING N N 33 A1INX C6 C7 DOUB Y N 34 A1INX C11 N1 SING N N 35 A1INX C11 C10 SING N N 36 A1INX C11 C12 SING N N 37 A1INX N1 N3 SING Y N 38 A1INX C9 O3 SING N N 39 A1INX C9 C10 SING N N 40 A1INX C2 C7 SING Y N 41 A1INX C2 O1 SING N N 42 A1INX C1 O1 SING N N 43 A1INX C7 O2 SING N N 44 A1INX N2 N3 DOUB Y N 45 A1INX O2 C8 SING N N 46 A1INX C5 H5 SING N N 47 A1INX C11 H13 SING N N 48 A1INX C8 H7 SING N N 49 A1INX C8 H8 SING N N 50 A1INX C8 H6 SING N N 51 A1INX C9 H9 SING N N 52 A1INX C9 H10 SING N N 53 A1INX C10 H12 SING N N 54 A1INX C10 H11 SING N N 55 A1INX C12 H15 SING N N 56 A1INX C12 H16 SING N N 57 A1INX C12 H14 SING N N 58 A1INX C13 H17 SING N N 59 A1INX C3 H4 SING N N 60 A1INX C1 H2 SING N N 61 A1INX C1 H3 SING N N 62 A1INX C1 H1 SING N N 63 A1INX C15 H18 SING N N 64 A1INX C15 H19 SING N N 65 A1INX C16 H20 SING N N 66 A1INX C17 H23 SING N N 67 A1INX C17 H21 SING N N 68 A1INX C17 H22 SING N N 69 A1INX C18 H25 SING N N 70 A1INX C18 H24 SING N N 71 A1INX C20 H26 SING N N 72 A1INX C21 H28 SING N N 73 A1INX C21 H27 SING N N 74 A1INX C22 H29 SING N N 75 A1INX C22 H30 SING N N 76 A1INX C23 H31 SING N N 77 A1INX C23 H32 SING N N 78 A1INX C24 H33 SING N N 79 A1INX C24 H34 SING N N 80 A1INX C26 H35 SING N N 81 A1INX C27 H36 SING N N 82 A1INX C28 H38 SING N N 83 A1INX C28 H37 SING N N 84 A1INX C29 H39 SING N N 85 A1INX C29 H40 SING N N 86 A1INX C30 H41 SING N N 87 A1INX C30 H42 SING N N 88 A1INX C31 H43 SING N N 89 A1INX C31 H44 SING N N 90 A1INX C32 H46 SING N N 91 A1INX C32 H45 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1INX InChI InChI 1.06 "InChI=1S/C32H46N4O6/c1-21-16-25-19-36(34-33-25)22(2)13-15-41-28-18-24(17-27(39-3)30(28)40-4)29(23-10-6-5-7-11-23)31(37)35-14-9-8-12-26(35)32(38)42-20-21/h17-19,21-23,26,29H,5-16,20H2,1-4H3/t21-,22+,26-,29-/m0/s1" A1INX InChIKey InChI 1.06 KYEGZUVYNFTHPD-LEEWXGEHSA-N A1INX SMILES_CANONICAL CACTVS 3.385 "COc1cc2cc(OCC[C@@H](C)n3cc(C[C@H](C)COC(=O)[C@@H]4CCCCN4C(=O)[C@H]2C5CCCCC5)nn3)c1OC" A1INX SMILES CACTVS 3.385 "COc1cc2cc(OCC[CH](C)n3cc(C[CH](C)COC(=O)[CH]4CCCCN4C(=O)[CH]2C5CCCCC5)nn3)c1OC" A1INX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CCOc2cc(cc(c2OC)OC)[C@@H](C(=O)N3CCCC[C@H]3C(=O)OC[C@H](Cc4cn1nn4)C)C5CCCCC5" A1INX SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCOc2cc(cc(c2OC)OC)C(C(=O)N3CCCCC3C(=O)OCC(Cc4cn1nn4)C)C5CCCCC5" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1INX "Create component" 2024-09-11 PDBE A1INX "Initial release" 2025-01-15 RCSB #