data_A1IO1 # _chem_comp.id A1IO1 _chem_comp.name "(3~{S})-3-azanyl-4-[(3~{R},4~{R},6~{S})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-4-oxidanylidene-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H26 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-19 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.435 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IO1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GUD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IO1 C30 C1 C 0 1 N N N N N N 83.672 -31.597 20.789 0.942 0.948 -1.963 C30 A1IO1 1 A1IO1 C26 C2 C 0 1 N N N N N N 89.584 -34.546 18.652 6.375 -0.302 1.187 C26 A1IO1 2 A1IO1 C21 C3 C 0 1 N N N N N N 89.501 -32.532 20.564 2.916 1.116 0.470 C21 A1IO1 3 A1IO1 C10 C4 C 0 1 Y N N N N N 84.247 -30.713 16.828 -3.841 1.168 -0.018 C10 A1IO1 4 A1IO1 C13 C5 C 0 1 N N R N N N 86.017 -31.680 19.920 -0.472 -0.196 -0.290 C13 A1IO1 5 A1IO1 C02 C6 C 0 1 N N N N N N 83.949 -28.211 16.122 -5.599 -0.210 0.764 C02 A1IO1 6 A1IO1 C04 C7 C 0 1 N N N N N N 85.174 -28.941 18.267 -3.449 -1.131 0.609 C04 A1IO1 7 A1IO1 C06 C8 C 0 1 Y N N N N N 84.930 -30.371 17.961 -2.961 0.103 0.129 C06 A1IO1 8 A1IO1 C08 C9 C 0 1 Y N N N N N 84.783 -32.541 17.880 -1.883 1.854 -0.632 C08 A1IO1 9 A1IO1 C12 C10 C 0 1 N N N N N N 83.034 -30.112 14.700 -6.124 2.088 0.155 C12 A1IO1 10 A1IO1 C14 C11 C 0 1 N N R N N N 85.091 -32.025 21.102 0.045 -0.264 -1.706 C14 A1IO1 11 A1IO1 C16 C12 C 0 1 N N N N N N 85.064 -33.534 21.490 0.845 -1.539 -1.976 C16 A1IO1 12 A1IO1 C17 C13 C 0 1 N N S N N N 86.331 -34.103 22.126 2.216 -1.375 -1.457 C17 A1IO1 13 A1IO1 C19 C14 C 0 1 N N N N N N 87.604 -33.266 22.078 2.371 -1.199 0.061 C19 A1IO1 14 A1IO1 C23 C15 C 0 1 N N S N N N 90.065 -32.060 19.216 4.364 0.781 0.220 C23 A1IO1 15 A1IO1 C25 C16 C 0 1 N N N N N N 90.277 -33.205 18.232 4.964 0.144 1.475 C25 A1IO1 16 A1IO1 C29 C17 C 0 1 N N N N N N 87.106 -32.708 19.643 0.561 0.491 0.636 C29 A1IO1 17 A1IO1 C31 C18 C 0 1 N N N N N N 84.959 -26.539 17.724 -5.272 -2.525 1.416 C31 A1IO1 18 A1IO1 N03 N1 N 0 1 N N N N N N 84.701 -27.904 17.380 -4.758 -1.247 0.917 N03 A1IO1 19 A1IO1 N07 N2 N 0 1 Y N N N N N 85.245 -31.533 18.606 -1.723 0.567 -0.268 N07 A1IO1 20 A1IO1 N09 N3 N 0 1 Y N N N N N 84.178 -32.069 16.810 -3.135 2.203 -0.482 N09 A1IO1 21 A1IO1 N11 N4 N 0 1 N N N N N N 83.738 -29.684 15.880 -5.175 0.983 0.307 N11 A1IO1 22 A1IO1 N20 N5 N 0 1 N N N N N N 88.077 -32.842 20.750 1.978 0.152 0.389 N20 A1IO1 23 A1IO1 N24 N6 N 0 1 N N N N N N 91.342 -31.398 19.428 5.102 2.009 -0.106 N24 A1IO1 24 A1IO1 O01 O1 O 0 1 N N N N N N 83.548 -27.368 15.372 -6.774 -0.354 1.044 O01 A1IO1 25 A1IO1 O05 O2 O 0 1 N N N N N N 85.773 -28.641 19.264 -2.697 -2.078 0.753 O05 A1IO1 26 A1IO1 O15 O3 O 0 1 N N N N N N 85.511 -31.284 22.212 -1.064 -0.217 -2.605 O15 A1IO1 27 A1IO1 O18 O4 O 0 1 N N N N N N 86.025 -34.319 23.520 2.973 -2.523 -1.846 O18 A1IO1 28 A1IO1 O22 O5 O 0 1 N N N N N N 90.278 -32.643 21.551 2.595 2.253 0.744 O22 A1IO1 29 A1IO1 O27 O6 O 0 1 N N N N N N 90.064 -35.245 19.590 7.102 -0.892 2.149 O27 A1IO1 30 A1IO1 O28 O7 O 0 1 N N N N N N 88.545 -34.931 18.045 6.851 -0.129 0.090 O28 A1IO1 31 A1IO1 H301 H1 H 0 0 N N N N N N 83.018 -31.847 21.637 1.851 0.860 -1.367 H301 A1IO1 32 A1IO1 H302 H2 H 0 0 N N N N N N 83.647 -30.511 20.614 1.204 0.988 -3.021 H302 A1IO1 33 A1IO1 H303 H3 H 0 0 N N N N N N 83.321 -32.122 19.888 0.412 1.859 -1.685 H303 A1IO1 34 A1IO1 H131 H4 H 0 0 N N N N N N 86.502 -30.718 20.140 -0.661 -1.207 0.071 H131 A1IO1 35 A1IO1 H081 H5 H 0 0 N N N N N N 84.887 -33.587 18.128 -1.096 2.500 -0.992 H081 A1IO1 36 A1IO1 H123 H6 H 0 0 N N N N N N 82.730 -29.232 14.114 -7.118 1.758 0.457 H123 A1IO1 37 A1IO1 H122 H7 H 0 0 N N N N N N 83.693 -30.748 14.090 -5.813 2.924 0.781 H122 A1IO1 38 A1IO1 H121 H8 H 0 0 N N N N N N 82.141 -30.684 14.993 -6.149 2.405 -0.888 H121 A1IO1 39 A1IO1 H161 H9 H 0 0 N N N N N N 84.863 -34.110 20.574 0.366 -2.382 -1.478 H161 A1IO1 40 A1IO1 H162 H10 H 0 0 N N N N N N 84.239 -33.680 22.203 0.883 -1.724 -3.049 H162 A1IO1 41 A1IO1 H171 H11 H 0 0 N N N N N N 86.543 -35.072 21.651 2.657 -0.505 -1.943 H171 A1IO1 42 A1IO1 H192 H12 H 0 0 N N N N N N 87.426 -32.358 22.672 1.728 -1.908 0.583 H192 A1IO1 43 A1IO1 H191 H13 H 0 0 N N N N N N 88.407 -33.857 22.543 3.410 -1.362 0.348 H191 A1IO1 44 A1IO1 H231 H14 H 0 0 N N N N N N 89.353 -31.348 18.774 4.437 0.081 -0.612 H231 A1IO1 45 A1IO1 H251 H15 H 0 0 N N N N N N 89.875 -32.900 17.255 4.364 -0.717 1.769 H251 A1IO1 46 A1IO1 H252 H16 H 0 0 N N N N N N 91.358 -33.388 18.143 4.973 0.874 2.285 H252 A1IO1 47 A1IO1 H292 H17 H 0 0 N N N N N N 87.650 -32.405 18.736 0.447 1.570 0.530 H292 A1IO1 48 A1IO1 H291 H18 H 0 0 N N N N N N 86.630 -33.685 19.476 0.324 0.226 1.666 H291 A1IO1 49 A1IO1 H312 H19 H 0 0 N N N N N N 85.517 -26.498 18.671 -5.198 -2.547 2.504 H312 A1IO1 50 A1IO1 H313 H20 H 0 0 N N N N N N 85.553 -26.066 16.928 -6.314 -2.638 1.120 H313 A1IO1 51 A1IO1 H311 H21 H 0 0 N N N N N N 84.005 -26.003 17.837 -4.684 -3.342 0.996 H311 A1IO1 52 A1IO1 H1 H22 H 0 1 N N N N N N 91.709 -31.091 18.550 5.049 2.674 0.650 H1 A1IO1 53 A1IO1 H242 H23 H 0 0 N N N N N N 91.213 -30.609 20.029 6.061 1.803 -0.341 H242 A1IO1 54 A1IO1 H151 H25 H 0 0 N N N N N N 84.953 -31.481 22.955 -0.814 -0.233 -3.539 H151 A1IO1 55 A1IO1 H181 H26 H 0 0 N N N N N N 86.788 -34.675 23.961 3.893 -2.506 -1.549 H181 A1IO1 56 A1IO1 H2 H27 H 0 1 N N N N N N 89.530 -36.021 19.712 8.001 -1.161 1.916 H2 A1IO1 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IO1 C02 O01 DOUB N N 1 A1IO1 N03 C02 SING N N 2 A1IO1 O05 C04 DOUB N N 3 A1IO1 C06 C04 SING N N 4 A1IO1 N07 C06 SING Y N 5 A1IO1 N09 C08 DOUB Y N 6 A1IO1 C10 N09 SING Y N 7 A1IO1 N11 C10 SING N N 8 A1IO1 C12 N11 SING N N 9 A1IO1 C08 N07 SING Y N 10 A1IO1 C13 N07 SING N N 11 A1IO1 C14 C13 SING N N 12 A1IO1 O15 C14 SING N N 13 A1IO1 C17 C16 SING N N 14 A1IO1 O18 C17 SING N N 15 A1IO1 C19 C17 SING N N 16 A1IO1 N20 C19 SING N N 17 A1IO1 O22 C21 DOUB N N 18 A1IO1 C23 C21 SING N N 19 A1IO1 N24 C23 SING N N 20 A1IO1 C25 C23 SING N N 21 A1IO1 C26 C25 SING N N 22 A1IO1 O27 C26 SING N N 23 A1IO1 O28 C26 DOUB N N 24 A1IO1 C21 N20 SING N N 25 A1IO1 C29 N20 SING N N 26 A1IO1 C16 C14 SING N N 27 A1IO1 C30 C14 SING N N 28 A1IO1 C04 N03 SING N N 29 A1IO1 C31 N03 SING N N 30 A1IO1 C02 N11 SING N N 31 A1IO1 C06 C10 DOUB Y N 32 A1IO1 C13 C29 SING N N 33 A1IO1 C30 H301 SING N N 34 A1IO1 C30 H302 SING N N 35 A1IO1 C30 H303 SING N N 36 A1IO1 C13 H131 SING N N 37 A1IO1 C08 H081 SING N N 38 A1IO1 C12 H123 SING N N 39 A1IO1 C12 H122 SING N N 40 A1IO1 C12 H121 SING N N 41 A1IO1 C16 H161 SING N N 42 A1IO1 C16 H162 SING N N 43 A1IO1 C17 H171 SING N N 44 A1IO1 C19 H192 SING N N 45 A1IO1 C19 H191 SING N N 46 A1IO1 C23 H231 SING N N 47 A1IO1 C25 H251 SING N N 48 A1IO1 C25 H252 SING N N 49 A1IO1 C29 H292 SING N N 50 A1IO1 C29 H291 SING N N 51 A1IO1 C31 H312 SING N N 52 A1IO1 C31 H313 SING N N 53 A1IO1 C31 H311 SING N N 54 A1IO1 N24 H1 SING N N 55 A1IO1 N24 H242 SING N N 56 A1IO1 O15 H151 SING N N 57 A1IO1 O18 H181 SING N N 58 A1IO1 O27 H2 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IO1 InChI InChI 1.06 "InChI=1S/C18H26N6O7/c1-18(31)5-9(25)6-23(15(28)10(19)4-12(26)27)7-11(18)24-8-20-14-13(24)16(29)22(3)17(30)21(14)2/h8-11,25,31H,4-7,19H2,1-3H3,(H,26,27)/t9-,10-,11+,18+/m0/s1" A1IO1 InChIKey InChI 1.06 PXCRTYLWTBRTOT-JXKOVVAVSA-N A1IO1 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2ncn([C@@H]3CN(C[C@@H](O)C[C@@]3(C)O)C(=O)[C@@H](N)CC(O)=O)c2C1=O" A1IO1 SMILES CACTVS 3.385 "CN1C(=O)N(C)c2ncn([CH]3CN(C[CH](O)C[C]3(C)O)C(=O)[CH](N)CC(O)=O)c2C1=O" A1IO1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1(C[C@@H](CN(C[C@H]1n2cnc3c2C(=O)N(C(=O)N3C)C)C(=O)[C@H](CC(=O)O)N)O)O" A1IO1 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CC(CN(CC1n2cnc3c2C(=O)N(C(=O)N3C)C)C(=O)C(CC(=O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id A1IO1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-azanyl-4-[(3~{R},4~{R},6~{S})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-4-oxidanylidene-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IO1 "Create component" 2024-09-19 PDBE A1IO1 "Initial release" 2024-12-04 RCSB #