data_A1IO4 # _chem_comp.id A1IO4 _chem_comp.name ;ethyl 3-[[2-[[[4-(~{N}'-hexoxycarbonylcarbamimidoyl)phenyl]amino]methyl]-1-methyl-benzimidazol-5-yl]carbonyl-pyridin-2-yl-amino]propanoate ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H41 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-20 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 627.733 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IO4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GUZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IO4 N1 N1 N 0 1 N N N N N N 4.395 -31.800 61.131 7.734 -1.385 -0.525 N1 A1IO4 1 A1IO4 N3 N2 N 0 1 N N N N N N 8.522 -27.422 61.813 1.489 -0.451 0.489 N3 A1IO4 2 A1IO4 C4 C1 C 0 1 N N N N N N 2.389 -28.387 59.177 13.389 0.784 -0.277 C4 A1IO4 3 A1IO4 C5 C2 C 0 1 N N N N N N 3.545 -29.386 59.246 11.866 0.931 -0.279 C5 A1IO4 4 A1IO4 C6 C3 C 0 1 N N N N N N 3.332 -30.676 58.448 11.220 -0.450 -0.408 C6 A1IO4 5 A1IO4 C7 C4 C 0 1 N N N N N N 4.104 -32.324 59.906 9.072 -1.444 -0.517 C7 A1IO4 6 A1IO4 C8 C5 C 0 1 N N N N N N 5.495 -32.174 61.775 7.076 -1.134 0.596 C8 A1IO4 7 A1IO4 C10 C6 C 0 1 Y N N N N N 6.541 -30.237 60.647 4.918 -0.689 1.752 C10 A1IO4 8 A1IO4 C13 C7 C 0 1 N N N N N N 9.785 -27.242 61.123 0.762 -0.556 -0.779 C13 A1IO4 9 A1IO4 C15 C8 C 0 1 Y N N N N N 11.916 -24.760 62.645 -2.626 0.664 -0.310 C15 A1IO4 10 A1IO4 C17 C9 C 0 1 Y N N N N N 12.222 -25.282 65.015 -4.111 -1.182 0.205 C17 A1IO4 11 A1IO4 C20 C10 C 0 1 Y N N N N N 12.734 -23.637 62.749 -3.702 1.546 -0.231 C20 A1IO4 12 A1IO4 C21 C11 C 0 1 N N N N N N 14.214 -22.185 64.180 -6.117 1.981 0.148 C21 A1IO4 13 A1IO4 C22 C12 C 0 1 N N N N N N 15.067 -21.111 66.193 -7.535 0.215 -0.750 C22 A1IO4 14 A1IO4 C24 C13 C 0 1 N N N N N N 14.950 -22.048 68.629 -8.534 -2.009 -0.296 C24 A1IO4 15 A1IO4 C26 C14 C 0 1 N N N N N N 11.856 -20.976 69.339 -10.164 -5.134 0.776 C26 A1IO4 16 A1IO4 C28 C15 C 0 1 Y N N N N N 11.463 -18.911 65.025 -10.725 2.710 -0.008 C28 A1IO4 17 A1IO4 C1 C16 C 0 1 N N N N N N 1.330 -29.111 61.984 16.204 3.397 -0.017 C1 A1IO4 18 A1IO4 C11 C17 C 0 1 Y N N N N N 7.284 -29.080 60.645 3.557 -0.521 1.722 C11 A1IO4 19 A1IO4 C12 C18 C 0 1 Y N N N N N 7.800 -28.585 61.836 2.868 -0.621 0.516 C12 A1IO4 20 A1IO4 C14 C19 C 0 1 Y N N N N N 10.639 -26.376 61.990 -0.708 -0.333 -0.535 C14 A1IO4 21 A1IO4 C16 C20 C 0 1 Y N N N N N 11.671 -25.563 63.765 -2.837 -0.710 -0.090 C16 A1IO4 22 A1IO4 C18 C21 C 0 1 Y N N N N N 13.041 -24.178 65.086 -5.162 -0.316 0.280 C18 A1IO4 23 A1IO4 C19 C22 C 0 1 Y N N N N N 13.297 -23.354 63.974 -4.970 1.055 0.064 C19 A1IO4 24 A1IO4 C2 C23 C 0 1 N N N N N N 1.119 -27.776 61.304 15.558 2.017 -0.147 C2 A1IO4 25 A1IO4 C23 C24 C 0 1 N N N N N N 14.567 -20.994 67.637 -8.340 -0.618 0.250 C23 A1IO4 26 A1IO4 C25 C25 C 0 1 N N N N N N 12.586 -22.261 69.142 -9.365 -4.239 -0.174 C25 A1IO4 27 A1IO4 C27 C26 C 0 1 Y N N N N N 12.704 -20.807 65.392 -8.436 2.425 -0.091 C27 A1IO4 28 A1IO4 C29 C27 C 0 1 Y N N N N N 10.334 -19.476 65.551 -10.588 4.073 0.164 C29 A1IO4 29 A1IO4 C3 C28 C 0 1 N N N N N N 2.220 -27.396 60.326 14.035 2.164 -0.148 C3 A1IO4 30 A1IO4 C30 C29 C 0 1 Y N N N N N 10.410 -20.771 66.016 -9.316 4.628 0.209 C30 A1IO4 31 A1IO4 C31 C30 C 0 1 Y N N N N N 11.599 -21.455 65.940 -8.224 3.789 0.079 C31 A1IO4 32 A1IO4 C32 C31 C 0 1 N N N N N N 10.345 -27.653 64.171 -1.316 -2.741 -0.097 C32 A1IO4 33 A1IO4 C33 C32 C 0 1 Y N N N N N 7.560 -29.265 63.028 3.558 -0.891 -0.664 C33 A1IO4 34 A1IO4 C34 C33 C 0 1 Y N N N N N 6.818 -30.428 63.027 4.918 -1.059 -0.641 C34 A1IO4 35 A1IO4 C9 C34 C 0 1 Y N N N N N 6.307 -30.935 61.832 5.615 -0.954 0.568 C9 A1IO4 36 A1IO4 N2 N3 N 0 1 N N N N N N 6.090 -33.344 61.982 7.753 -1.043 1.780 N2 A1IO4 37 A1IO4 N4 N4 N 0 1 Y N N N N N 11.240 -25.284 61.550 -1.303 0.823 -0.577 N4 A1IO4 38 A1IO4 N5 N5 N 0 1 N N N N N N 13.958 -21.421 65.266 -7.346 1.567 -0.218 N5 A1IO4 39 A1IO4 N6 N6 N 0 1 Y N N N N N 12.640 -19.549 64.939 -9.665 1.933 -0.124 N6 A1IO4 40 A1IO4 N7 N7 N 0 1 Y N N N N N 10.836 -26.572 63.325 -1.605 -1.311 -0.234 N7 A1IO4 41 A1IO4 O1 O1 O 0 1 N N N N N N 3.040 -31.666 59.453 9.798 -0.312 -0.410 O1 A1IO4 42 A1IO4 O2 O2 O 0 1 N N N N N N 4.857 -32.990 59.222 9.634 -2.520 -0.608 O2 A1IO4 43 A1IO4 O3 O3 O 0 1 N N N N N N 15.260 -22.091 63.553 -5.952 3.118 0.548 O3 A1IO4 44 A1IO4 O4 O4 O 0 1 N N N N N N 15.930 -22.734 68.553 -8.077 -2.303 -1.375 O4 A1IO4 45 A1IO4 O5 O5 O 0 1 N N N N N N 13.993 -22.280 69.547 -9.216 -2.920 0.415 O5 A1IO4 46 A1IO4 H18 H1 H 0 1 N N N N N N 7.907 -26.734 61.428 1.008 -0.264 1.310 H18 A1IO4 47 A1IO4 H9 H2 H 0 1 N N N N N N 1.458 -28.970 59.110 13.693 0.160 0.564 H9 A1IO4 48 A1IO4 H8 H3 H 0 1 N N N N N N 2.521 -27.799 58.257 13.710 0.318 -1.209 H8 A1IO4 49 A1IO4 H10 H4 H 0 1 N N N N N N 4.448 -28.891 58.860 11.545 1.397 0.653 H10 A1IO4 50 A1IO4 H11 H5 H 0 1 N N N N N N 3.699 -29.658 60.301 11.562 1.555 -1.120 H11 A1IO4 51 A1IO4 H12 H6 H 0 1 N N N N N N 2.489 -30.568 57.749 11.541 -0.915 -1.340 H12 A1IO4 52 A1IO4 H13 H7 H 0 1 N N N N N N 4.240 -30.944 57.888 11.524 -1.073 0.433 H13 A1IO4 53 A1IO4 H16 H8 H 0 1 N N N N N N 6.133 -30.610 59.719 5.451 -0.612 2.688 H16 A1IO4 54 A1IO4 H19 H9 H 0 1 N N N N N N 10.272 -28.216 60.966 1.134 0.197 -1.474 H19 A1IO4 55 A1IO4 H20 H10 H 0 1 N N N N N N 9.618 -26.755 60.151 0.914 -1.548 -1.203 H20 A1IO4 56 A1IO4 H21 H11 H 0 1 N N N N N N 12.017 -25.896 65.879 -4.269 -2.237 0.373 H21 A1IO4 57 A1IO4 H23 H12 H 0 1 N N N N N N 12.922 -23.006 61.893 -3.553 2.602 -0.398 H23 A1IO4 58 A1IO4 H24 H13 H 0 1 N N N N N N 15.816 -21.914 66.137 -6.563 -0.251 -0.912 H24 A1IO4 59 A1IO4 H25 H14 H 0 1 N N N N N N 15.528 -20.158 65.895 -8.075 0.269 -1.695 H25 A1IO4 60 A1IO4 H30 H15 H 0 1 N N N N N N 10.816 -21.089 68.999 -9.637 -5.217 1.726 H30 A1IO4 61 A1IO4 H31 H16 H 0 1 N N N N N N 11.866 -20.709 70.406 -11.149 -4.698 0.943 H31 A1IO4 62 A1IO4 H32 H17 H 0 1 N N N N N N 12.348 -20.182 68.757 -10.275 -6.124 0.334 H32 A1IO4 63 A1IO4 H33 H18 H 0 1 N N N N N N 11.404 -17.897 64.659 -11.712 2.274 -0.043 H33 A1IO4 64 A1IO4 H2 H19 H 0 1 N N N N N N 0.494 -29.309 62.671 17.289 3.292 -0.016 H2 A1IO4 65 A1IO4 H3 H20 H 0 1 N N N N N N 1.377 -29.906 61.225 15.901 4.021 -0.858 H3 A1IO4 66 A1IO4 H1 H21 H 0 1 N N N N N N 2.273 -29.089 62.550 15.883 3.863 0.915 H1 A1IO4 67 A1IO4 H17 H22 H 0 1 N N N N N N 7.466 -28.556 59.718 3.020 -0.312 2.635 H17 A1IO4 68 A1IO4 H22 H23 H 0 1 N N N N N N 13.505 -23.935 66.031 -6.150 -0.690 0.508 H22 A1IO4 69 A1IO4 H4 H24 H 0 1 N N N N N N 0.167 -27.815 60.754 15.879 1.551 -1.079 H4 A1IO4 70 A1IO4 H5 H25 H 0 1 N N N N N N 1.063 -26.998 62.080 15.862 1.393 0.694 H5 A1IO4 71 A1IO4 H26 H26 H 0 1 N N N N N N 14.936 -20.035 68.028 -7.800 -0.671 1.196 H26 A1IO4 72 A1IO4 H27 H27 H 0 1 N N N N N N 13.468 -20.975 67.596 -9.311 -0.152 0.413 H27 A1IO4 73 A1IO4 H28 H28 H 0 1 N N N N N N 12.543 -22.510 68.071 -8.380 -4.675 -0.341 H28 A1IO4 74 A1IO4 H29 H29 H 0 1 N N N N N N 12.061 -23.036 69.720 -9.891 -4.156 -1.124 H29 A1IO4 75 A1IO4 H34 H30 H 0 1 N N N N N N 9.408 -18.922 65.601 -11.461 4.701 0.262 H34 A1IO4 76 A1IO4 H7 H31 H 0 1 N N N N N N 1.982 -26.409 59.902 13.731 2.788 -0.989 H7 A1IO4 77 A1IO4 H6 H32 H 0 1 N N N N N N 3.170 -27.339 60.878 13.714 2.630 0.784 H6 A1IO4 78 A1IO4 H35 H33 H 0 1 N N N N N N 9.538 -21.247 66.439 -9.182 5.692 0.343 H35 A1IO4 79 A1IO4 H36 H34 H 0 1 N N N N N N 11.675 -22.471 66.297 -7.221 4.187 0.106 H36 A1IO4 80 A1IO4 H38 H35 H 0 1 N N N N N N 9.701 -28.319 63.578 -1.055 -2.962 0.937 H38 A1IO4 81 A1IO4 H39 H36 H 0 1 N N N N N N 11.197 -28.224 64.567 -2.197 -3.318 -0.381 H39 A1IO4 82 A1IO4 H37 H37 H 0 1 N N N N N N 9.766 -27.231 65.006 -0.483 -3.007 -0.748 H37 A1IO4 83 A1IO4 H40 H38 H 0 1 N N N N N N 7.956 -28.880 63.956 3.020 -0.968 -1.597 H40 A1IO4 84 A1IO4 H41 H39 H 0 1 N N N N N N 6.632 -30.948 63.955 5.452 -1.268 -1.556 H41 A1IO4 85 A1IO4 H15 H40 H 0 1 N N N N N N 7.071 -33.379 62.173 8.722 -1.088 1.789 H15 A1IO4 86 A1IO4 H14 H41 H 0 1 N N N N N N 5.557 -34.189 61.947 7.265 -0.932 2.611 H14 A1IO4 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IO4 C1 C2 SING N N 1 A1IO4 C2 C3 SING N N 2 A1IO4 C3 C4 SING N N 3 A1IO4 C4 C5 SING N N 4 A1IO4 C5 C6 SING N N 5 A1IO4 C6 O1 SING N N 6 A1IO4 O1 C7 SING N N 7 A1IO4 C7 O2 DOUB N N 8 A1IO4 C7 N1 SING N N 9 A1IO4 N1 C8 DOUB N N 10 A1IO4 C8 N2 SING N N 11 A1IO4 C8 C9 SING N N 12 A1IO4 C9 C10 DOUB Y N 13 A1IO4 C10 C11 SING Y N 14 A1IO4 C11 C12 DOUB Y N 15 A1IO4 C12 N3 SING N N 16 A1IO4 N3 C13 SING N N 17 A1IO4 C13 C14 SING N N 18 A1IO4 C14 N4 DOUB Y N 19 A1IO4 N4 C15 SING Y N 20 A1IO4 C15 C16 DOUB Y N 21 A1IO4 C16 C17 SING Y N 22 A1IO4 C17 C18 DOUB Y N 23 A1IO4 C18 C19 SING Y N 24 A1IO4 C19 C20 DOUB Y N 25 A1IO4 C19 C21 SING N N 26 A1IO4 C21 O3 DOUB N N 27 A1IO4 C21 N5 SING N N 28 A1IO4 N5 C22 SING N N 29 A1IO4 C22 C23 SING N N 30 A1IO4 C23 C24 SING N N 31 A1IO4 C24 O4 DOUB N N 32 A1IO4 C24 O5 SING N N 33 A1IO4 O5 C25 SING N N 34 A1IO4 C25 C26 SING N N 35 A1IO4 N5 C27 SING N N 36 A1IO4 C27 N6 DOUB Y N 37 A1IO4 N6 C28 SING Y N 38 A1IO4 C28 C29 DOUB Y N 39 A1IO4 C29 C30 SING Y N 40 A1IO4 C30 C31 DOUB Y N 41 A1IO4 C16 N7 SING Y N 42 A1IO4 N7 C32 SING N N 43 A1IO4 C12 C33 SING Y N 44 A1IO4 C33 C34 DOUB Y N 45 A1IO4 C9 C34 SING Y N 46 A1IO4 C14 N7 SING Y N 47 A1IO4 C15 C20 SING Y N 48 A1IO4 C27 C31 SING Y N 49 A1IO4 N3 H18 SING N N 50 A1IO4 C4 H9 SING N N 51 A1IO4 C4 H8 SING N N 52 A1IO4 C5 H10 SING N N 53 A1IO4 C5 H11 SING N N 54 A1IO4 C6 H12 SING N N 55 A1IO4 C6 H13 SING N N 56 A1IO4 C10 H16 SING N N 57 A1IO4 C13 H19 SING N N 58 A1IO4 C13 H20 SING N N 59 A1IO4 C17 H21 SING N N 60 A1IO4 C20 H23 SING N N 61 A1IO4 C22 H24 SING N N 62 A1IO4 C22 H25 SING N N 63 A1IO4 C26 H30 SING N N 64 A1IO4 C26 H31 SING N N 65 A1IO4 C26 H32 SING N N 66 A1IO4 C28 H33 SING N N 67 A1IO4 C1 H2 SING N N 68 A1IO4 C1 H3 SING N N 69 A1IO4 C1 H1 SING N N 70 A1IO4 C11 H17 SING N N 71 A1IO4 C18 H22 SING N N 72 A1IO4 C2 H4 SING N N 73 A1IO4 C2 H5 SING N N 74 A1IO4 C23 H26 SING N N 75 A1IO4 C23 H27 SING N N 76 A1IO4 C25 H28 SING N N 77 A1IO4 C25 H29 SING N N 78 A1IO4 C29 H34 SING N N 79 A1IO4 C3 H7 SING N N 80 A1IO4 C3 H6 SING N N 81 A1IO4 C30 H35 SING N N 82 A1IO4 C31 H36 SING N N 83 A1IO4 C32 H38 SING N N 84 A1IO4 C32 H39 SING N N 85 A1IO4 C32 H37 SING N N 86 A1IO4 C33 H40 SING N N 87 A1IO4 C34 H41 SING N N 88 A1IO4 N2 H15 SING N N 89 A1IO4 N2 H14 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IO4 InChI InChI 1.06 "InChI=1S/C34H41N7O5/c1-4-6-7-10-21-46-34(44)39-32(35)24-12-15-26(16-13-24)37-23-30-38-27-22-25(14-17-28(27)40(30)3)33(43)41(20-18-31(42)45-5-2)29-11-8-9-19-36-29/h8-9,11-17,19,22,37H,4-7,10,18,20-21,23H2,1-3H3,(H2,35,39,44)" A1IO4 InChIKey InChI 1.06 KSGXQBZTULBEEQ-UHFFFAOYSA-N A1IO4 SMILES_CANONICAL CACTVS 3.385 "CCCCCCOC(=O)N=C(N)c1ccc(NCc2nc3cc(ccc3n2C)C(=O)N(CCC(=O)OCC)c4ccccn4)cc1" A1IO4 SMILES CACTVS 3.385 "CCCCCCOC(=O)N=C(N)c1ccc(NCc2nc3cc(ccc3n2C)C(=O)N(CCC(=O)OCC)c4ccccn4)cc1" A1IO4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCOC(=O)N=C(c1ccc(cc1)NCc2nc3cc(ccc3n2C)C(=O)N(CCC(=O)OCC)c4ccccn4)N" A1IO4 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCOC(=O)N=C(c1ccc(cc1)NCc2nc3cc(ccc3n2C)C(=O)N(CCC(=O)OCC)c4ccccn4)N" # _pdbx_chem_comp_identifier.comp_id A1IO4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;ethyl 3-[[2-[[[4-(~{N}'-hexoxycarbonylcarbamimidoyl)phenyl]amino]methyl]-1-methyl-benzimidazol-5-yl]carbonyl-pyridin-2-yl-amino]propanoate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IO4 "Create component" 2024-09-20 PDBE A1IO4 "Initial release" 2026-04-08 RCSB #