data_A1IOD # _chem_comp.id A1IOD _chem_comp.name "(2~{S},9~{S},12~{R},13~{S},14~{E},18~{R})-2-cyclohexyl-18-(hydroxymethyl)-22,23-dimethoxy-12-methyl-13-oxidanyl-11,17,20-trioxa-4-azatricyclo[19.3.1.0^{4,9}]pentacosa-1(25),14,21,23-tetraene-3,10-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H45 N O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-12 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.690 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IOD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GQJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IOD C4 C1 C 0 1 Y N N N N N -10.147 11.782 14.325 1.521 1.562 -0.397 C4 A1IOD 1 A1IOD C14 C2 C 0 1 N N N N N N -12.356 15.974 15.485 -2.353 -3.324 -0.072 C14 A1IOD 2 A1IOD C5 C3 C 0 1 Y N N N N N -11.410 11.597 14.878 1.675 0.305 0.155 C5 A1IOD 3 A1IOD C6 C4 C 0 1 Y N N N N N -11.626 11.767 16.233 2.799 -0.456 -0.136 C6 A1IOD 4 A1IOD C11 C5 C 0 1 N N N N N N -15.224 12.967 17.934 2.349 -3.804 1.904 C11 A1IOD 5 A1IOD C7 C6 C 0 1 Y N N N N N -10.574 12.039 17.078 3.765 0.039 -1.004 C7 A1IOD 6 A1IOD C8 C7 C 0 1 N N N N N N -11.220 13.410 18.935 4.777 -1.577 -2.425 C8 A1IOD 7 A1IOD C9 C8 C 0 1 N N N N N N -14.026 11.520 16.164 2.598 -2.815 -0.378 C9 A1IOD 8 A1IOD C10 C9 C 0 1 N N R N N N -14.805 12.765 16.501 1.839 -3.844 0.462 C10 A1IOD 9 A1IOD C12 C10 C 0 1 N N N N N N -14.325 14.567 15.071 -0.409 -4.681 0.544 C12 A1IOD 10 A1IOD C13 C11 C 0 1 N N N N N N -13.359 15.627 14.735 -1.662 -4.426 -0.253 C13 A1IOD 11 A1IOD N1 N1 N 0 1 N N N N N N -10.217 13.816 11.794 -2.133 2.359 -0.190 N1 A1IOD 12 A1IOD C3 C12 C 0 1 Y N N N N N -9.087 12.080 15.187 2.480 2.049 -1.270 C3 A1IOD 13 A1IOD C1 C13 C 0 1 N N N N N N -7.091 12.704 17.020 4.281 3.069 -3.001 C1 A1IOD 14 A1IOD O1 O1 O 0 1 N N N N N N -8.383 12.482 17.507 4.524 1.776 -2.445 O1 A1IOD 15 A1IOD C2 C14 C 0 1 Y N N N N N -9.305 12.176 16.541 3.595 1.293 -1.576 C2 A1IOD 16 A1IOD O2 O2 O 0 1 N N N N N N -10.767 12.153 18.442 4.867 -0.701 -1.300 O2 A1IOD 17 A1IOD O3 O3 O 0 1 N N N N N N -12.809 11.609 16.924 2.942 -1.686 0.427 O3 A1IOD 18 A1IOD O4 O4 O 0 1 N N N N N N -16.267 12.036 18.059 1.723 -4.843 2.659 O4 A1IOD 19 A1IOD O5 O5 O 0 1 N N N N N N -14.129 14.003 16.323 0.445 -3.543 0.447 O5 A1IOD 20 A1IOD C15 C15 C 0 1 N N S N N N -11.373 17.054 15.186 -3.600 -3.108 -0.883 C15 A1IOD 21 A1IOD O6 O6 O 0 1 N N N N N N -11.795 17.814 14.067 -3.241 -2.910 -2.253 O6 A1IOD 22 A1IOD C16 C16 C 0 1 N N R N N N -9.950 16.565 14.916 -4.407 -1.919 -0.395 C16 A1IOD 23 A1IOD C17 C17 C 0 1 N N N N N N -9.318 15.820 16.083 -5.362 -2.395 0.707 C17 A1IOD 24 A1IOD O7 O7 O 0 1 N N N N N N -9.967 15.642 13.798 -3.621 -0.832 0.105 O7 A1IOD 25 A1IOD C18 C18 C 0 1 N N N N N N -9.499 16.123 12.625 -3.378 0.243 -0.626 C18 A1IOD 26 A1IOD O8 O8 O 0 1 N N N N N N -8.949 17.191 12.526 -3.205 0.106 -1.812 O8 A1IOD 27 A1IOD C19 C19 C 0 1 N N S N N N -9.653 15.147 11.482 -3.405 1.643 -0.088 C19 A1IOD 28 A1IOD C20 C20 C 0 1 N N N N N N -10.481 15.796 10.385 -4.527 2.384 -0.820 C20 A1IOD 29 A1IOD C21 C21 C 0 1 N N N N N N -11.938 15.952 10.748 -4.542 3.854 -0.408 C21 A1IOD 30 A1IOD C22 C22 C 0 1 N N N N N N -12.506 14.542 11.003 -3.220 4.485 -0.851 C22 A1IOD 31 A1IOD C23 C23 C 0 1 N N N N N N -11.686 13.756 11.998 -2.077 3.822 -0.083 C23 A1IOD 32 A1IOD C24 C24 C 0 1 N N N N N N -9.407 12.820 12.186 -0.956 1.697 -0.311 C24 A1IOD 33 A1IOD O9 O9 O 0 1 N N N N N N -8.175 12.948 12.143 -0.927 0.531 -0.652 O9 A1IOD 34 A1IOD C25 C25 C 0 1 N N S N N N -9.970 11.551 12.830 0.338 2.420 -0.035 C25 A1IOD 35 A1IOD C26 C26 C 0 1 N N N N N N -9.063 10.346 12.523 0.420 2.750 1.460 C26 A1IOD 36 A1IOD C27 C27 C 0 1 N N N N N N -9.505 9.148 13.365 0.289 1.461 2.274 C27 A1IOD 37 A1IOD C28 C28 C 0 1 N N N N N N -8.626 7.951 13.127 0.370 1.790 3.767 C28 A1IOD 38 A1IOD C29 C29 C 0 1 N N N N N N -8.536 7.592 11.692 1.716 2.451 4.071 C29 A1IOD 39 A1IOD C30 C30 C 0 1 N N N N N N -8.106 8.722 10.811 1.847 3.739 3.256 C30 A1IOD 40 A1IOD C31 C31 C 0 1 N N N N N N -8.989 9.958 11.052 1.766 3.411 1.764 C31 A1IOD 41 A1IOD H18 H1 H 0 1 N N N N N N -12.223 15.431 16.409 -2.026 -2.593 0.649 H18 A1IOD 42 A1IOD H5 H2 H 0 1 N N N N N N -12.234 11.316 14.239 0.916 -0.092 0.812 H5 A1IOD 43 A1IOD H12 H3 H 0 1 N N N N N N -14.401 12.742 18.628 3.429 -3.950 1.911 H12 A1IOD 44 A1IOD H13 H4 H 0 1 N N N N N N -15.580 13.993 18.107 2.110 -2.838 2.348 H13 A1IOD 45 A1IOD H7 H5 H 0 1 N N N N N N -11.329 13.358 20.028 3.976 -2.298 -2.261 H7 A1IOD 46 A1IOD H8 H6 H 0 1 N N N N N N -10.489 14.190 18.677 4.565 -0.996 -3.322 H8 A1IOD 47 A1IOD H6 H7 H 0 1 N N N N N N -12.192 13.653 18.481 5.722 -2.107 -2.550 H6 A1IOD 48 A1IOD H10 H8 H 0 1 N N N N N N -14.593 10.622 16.451 3.508 -3.273 -0.767 H10 A1IOD 49 A1IOD H9 H9 H 0 1 N N N N N N -13.805 11.485 15.087 1.978 -2.496 -1.215 H9 A1IOD 50 A1IOD H11 H10 H 0 1 N N N N N N -15.715 12.767 15.883 1.994 -4.840 0.046 H11 A1IOD 51 A1IOD H16 H11 H 0 1 N N N N N N -15.337 14.998 15.040 -0.671 -4.856 1.586 H16 A1IOD 52 A1IOD H15 H12 H 0 1 N N N N N N -14.242 13.771 14.316 0.099 -5.557 0.143 H15 A1IOD 53 A1IOD H17 H13 H 0 1 N N N N N N -13.494 16.152 13.801 -1.999 -5.152 -0.978 H17 A1IOD 54 A1IOD H4 H14 H 0 1 N N N N N N -8.095 12.235 14.788 2.355 3.031 -1.705 H4 A1IOD 55 A1IOD H2 H15 H 0 1 N N N N N N -6.419 12.942 17.858 3.341 3.056 -3.554 H2 A1IOD 56 A1IOD H3 H16 H 0 1 N N N N N N -6.732 11.799 16.508 4.220 3.805 -2.199 H3 A1IOD 57 A1IOD H1 H17 H 0 1 N N N N N N -7.106 13.545 16.311 5.095 3.334 -3.676 H1 A1IOD 58 A1IOD H14 H18 H 0 1 N N N N N N -16.619 12.071 18.941 2.000 -4.878 3.585 H14 A1IOD 59 A1IOD H19 H19 H 0 1 N N N N N N -11.328 17.716 16.063 -4.223 -4.008 -0.810 H19 A1IOD 60 A1IOD H20 H20 H 0 1 N N N N N N -12.679 18.129 14.213 -2.767 -3.656 -2.647 H20 A1IOD 61 A1IOD H21 H21 H 0 1 N N N N N N -9.321 17.433 14.670 -5.019 -1.549 -1.227 H21 A1IOD 62 A1IOD H23 H22 H 0 1 N N N N N N -9.281 16.479 16.963 -4.786 -2.816 1.531 H23 A1IOD 63 A1IOD H24 H23 H 0 1 N N N N N N -9.919 14.929 16.318 -5.949 -1.551 1.068 H24 A1IOD 64 A1IOD H22 H24 H 0 1 N N N N N N -8.297 15.512 15.812 -6.030 -3.156 0.305 H22 A1IOD 65 A1IOD H25 H25 H 0 1 N N N N N N -8.648 14.984 11.065 -3.678 1.591 0.982 H25 A1IOD 66 A1IOD H27 H26 H 0 1 N N N N N N -10.411 15.173 9.481 -4.365 2.310 -1.896 H27 A1IOD 67 A1IOD H26 H27 H 0 1 N N N N N N -10.065 16.793 10.177 -5.484 1.925 -0.568 H26 A1IOD 68 A1IOD H28 H28 H 0 1 N N N N N N -12.035 16.566 11.656 -5.367 4.359 -0.906 H28 A1IOD 69 A1IOD H29 H29 H 0 1 N N N N N N -12.482 16.432 9.921 -4.645 3.942 0.669 H29 A1IOD 70 A1IOD H30 H30 H 0 1 N N N N N N -13.531 14.640 11.391 -3.088 4.329 -1.921 H30 A1IOD 71 A1IOD H31 H31 H 0 1 N N N N N N -12.525 13.992 10.050 -3.235 5.552 -0.634 H31 A1IOD 72 A1IOD H32 H32 H 0 1 N N N N N N -11.906 14.145 13.003 -2.153 4.104 0.974 H32 A1IOD 73 A1IOD H33 H33 H 0 1 N N N N N N -11.995 12.702 11.937 -1.130 4.185 -0.489 H33 A1IOD 74 A1IOD H34 H34 H 0 1 N N N N N N -10.960 11.354 12.392 0.380 3.344 -0.614 H34 A1IOD 75 A1IOD H35 H35 H 0 1 N N N N N N -8.046 10.614 12.844 -0.388 3.432 1.727 H35 A1IOD 76 A1IOD H36 H36 H 0 1 N N N N N N -9.455 9.422 14.429 -0.671 0.991 2.058 H36 A1IOD 77 A1IOD H37 H37 H 0 1 N N N N N N -10.541 8.889 13.101 1.096 0.779 2.008 H37 A1IOD 78 A1IOD H39 H38 H 0 1 N N N N N N -9.038 7.094 13.680 -0.438 2.472 4.033 H39 A1IOD 79 A1IOD H38 H39 H 0 1 N N N N N N -7.615 8.175 13.499 0.276 0.872 4.347 H38 A1IOD 80 A1IOD H41 H40 H 0 1 N N N N N N -9.526 7.250 11.358 1.774 2.685 5.134 H41 A1IOD 81 A1IOD H40 H41 H 0 1 N N N N N N -7.809 6.773 11.585 2.524 1.769 3.804 H40 A1IOD 82 A1IOD H43 H42 H 0 1 N N N N N N -8.193 8.414 9.759 1.040 4.421 3.523 H43 A1IOD 83 A1IOD H42 H43 H 0 1 N N N N N N -7.059 8.976 11.033 2.806 4.210 3.473 H42 A1IOD 84 A1IOD H44 H44 H 0 1 N N N N N N -8.574 10.804 10.485 2.574 2.729 1.498 H44 A1IOD 85 A1IOD H45 H45 H 0 1 N N N N N N -10.006 9.740 10.693 1.860 4.329 1.184 H45 A1IOD 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IOD C20 C21 SING N N 1 A1IOD C20 C19 SING N N 2 A1IOD C21 C22 SING N N 3 A1IOD C30 C31 SING N N 4 A1IOD C30 C29 SING N N 5 A1IOD C22 C23 SING N N 6 A1IOD C31 C26 SING N N 7 A1IOD C19 N1 SING N N 8 A1IOD C19 C18 SING N N 9 A1IOD C29 C28 SING N N 10 A1IOD N1 C23 SING N N 11 A1IOD N1 C24 SING N N 12 A1IOD O9 C24 DOUB N N 13 A1IOD C24 C25 SING N N 14 A1IOD C26 C25 SING N N 15 A1IOD C26 C27 SING N N 16 A1IOD O8 C18 DOUB N N 17 A1IOD C18 O7 SING N N 18 A1IOD C25 C4 SING N N 19 A1IOD C28 C27 SING N N 20 A1IOD O7 C16 SING N N 21 A1IOD O6 C15 SING N N 22 A1IOD C4 C5 DOUB Y N 23 A1IOD C4 C3 SING Y N 24 A1IOD C13 C12 SING N N 25 A1IOD C13 C14 DOUB N E 26 A1IOD C5 C6 SING Y N 27 A1IOD C16 C15 SING N N 28 A1IOD C16 C17 SING N N 29 A1IOD C12 O5 SING N N 30 A1IOD C15 C14 SING N N 31 A1IOD C3 C2 DOUB Y N 32 A1IOD C9 C10 SING N N 33 A1IOD C9 O3 SING N N 34 A1IOD C6 O3 SING N N 35 A1IOD C6 C7 DOUB Y N 36 A1IOD O5 C10 SING N N 37 A1IOD C10 C11 SING N N 38 A1IOD C2 C7 SING Y N 39 A1IOD C2 O1 SING N N 40 A1IOD C1 O1 SING N N 41 A1IOD C7 O2 SING N N 42 A1IOD C11 O4 SING N N 43 A1IOD O2 C8 SING N N 44 A1IOD C14 H18 SING N N 45 A1IOD C5 H5 SING N N 46 A1IOD C11 H12 SING N N 47 A1IOD C11 H13 SING N N 48 A1IOD C8 H7 SING N N 49 A1IOD C8 H8 SING N N 50 A1IOD C8 H6 SING N N 51 A1IOD C9 H10 SING N N 52 A1IOD C9 H9 SING N N 53 A1IOD C10 H11 SING N N 54 A1IOD C12 H16 SING N N 55 A1IOD C12 H15 SING N N 56 A1IOD C13 H17 SING N N 57 A1IOD C3 H4 SING N N 58 A1IOD C1 H2 SING N N 59 A1IOD C1 H3 SING N N 60 A1IOD C1 H1 SING N N 61 A1IOD O4 H14 SING N N 62 A1IOD C15 H19 SING N N 63 A1IOD O6 H20 SING N N 64 A1IOD C16 H21 SING N N 65 A1IOD C17 H23 SING N N 66 A1IOD C17 H24 SING N N 67 A1IOD C17 H22 SING N N 68 A1IOD C19 H25 SING N N 69 A1IOD C20 H27 SING N N 70 A1IOD C20 H26 SING N N 71 A1IOD C21 H28 SING N N 72 A1IOD C21 H29 SING N N 73 A1IOD C22 H30 SING N N 74 A1IOD C22 H31 SING N N 75 A1IOD C23 H32 SING N N 76 A1IOD C23 H33 SING N N 77 A1IOD C25 H34 SING N N 78 A1IOD C26 H35 SING N N 79 A1IOD C27 H36 SING N N 80 A1IOD C27 H37 SING N N 81 A1IOD C28 H39 SING N N 82 A1IOD C28 H38 SING N N 83 A1IOD C29 H41 SING N N 84 A1IOD C29 H40 SING N N 85 A1IOD C30 H43 SING N N 86 A1IOD C30 H42 SING N N 87 A1IOD C31 H44 SING N N 88 A1IOD C31 H45 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IOD InChI InChI 1.06 "InChI=1S/C31H45NO9/c1-20-25(34)13-9-15-39-23(18-33)19-40-27-17-22(16-26(37-2)29(27)38-3)28(21-10-5-4-6-11-21)30(35)32-14-8-7-12-24(32)31(36)41-20/h9,13,16-17,20-21,23-25,28,33-34H,4-8,10-12,14-15,18-19H2,1-3H3/b13-9+/t20-,23-,24+,25+,28+/m1/s1" A1IOD InChIKey InChI 1.06 OORFHMIPOAXXDM-MLAXXWBISA-N A1IOD SMILES_CANONICAL CACTVS 3.385 "COc1cc2cc(OC[C@@H](CO)OC\C=C\[C@H](O)[C@@H](C)OC(=O)[C@@H]3CCCCN3C(=O)[C@H]2C4CCCCC4)c1OC" A1IOD SMILES CACTVS 3.385 "COc1cc2cc(OC[CH](CO)OCC=C[CH](O)[CH](C)OC(=O)[CH]3CCCCN3C(=O)[CH]2C4CCCCC4)c1OC" A1IOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H](/C=C/CO[C@@H](COc2cc(cc(c2OC)OC)[C@@H](C(=O)N3CCCC[C@H]3C(=O)O1)C4CCCCC4)CO)O" A1IOD SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C=CCOC(COc2cc(cc(c2OC)OC)C(C(=O)N3CCCCC3C(=O)O1)C4CCCCC4)CO)O" # _pdbx_chem_comp_identifier.comp_id A1IOD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},9~{S},12~{R},13~{S},14~{E},18~{R})-2-cyclohexyl-18-(hydroxymethyl)-22,23-dimethoxy-12-methyl-13-oxidanyl-11,17,20-trioxa-4-azatricyclo[19.3.1.0^{4,9}]pentacosa-1(25),14,21,23-tetraene-3,10-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IOD "Create component" 2024-09-12 PDBE A1IOD "Initial release" 2025-01-15 RCSB #