data_A1IOL # _chem_comp.id A1IOL _chem_comp.name "~{N}-[(5~{S})-5-azanyl-6-[(3~{S},4~{S},6~{R})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-6-oxidanylidene-hexyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H35 N7 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-13 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IOL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GS4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IOL N1 N1 N 0 1 Y N N N N N 85.271 -31.965 18.701 2.529 -0.120 -1.087 N1 A1IOL 1 A1IOL N3 N2 N 0 1 N N N N N N 84.028 -30.054 16.062 0.297 2.541 -1.684 N3 A1IOL 2 A1IOL C4 C1 C 0 1 Y N N N N N 84.395 -31.028 16.937 1.042 1.376 -1.765 C4 A1IOL 3 A1IOL C5 C2 C 0 1 N N N N N N 83.347 -30.389 14.815 -0.653 2.878 -2.747 C5 A1IOL 4 A1IOL C6 C3 C 0 1 N N S N N N 85.931 -32.263 19.951 3.546 -0.840 -0.317 C6 A1IOL 5 A1IOL C7 C4 C 0 1 N N S N N N 85.160 -31.946 21.249 3.557 -2.293 -0.727 C7 A1IOL 6 A1IOL C8 C5 C 0 1 N N N N N N 85.885 -32.854 22.278 2.208 -2.795 -1.271 C8 A1IOL 7 A1IOL C10 C6 C 0 1 N N N N N N 88.493 -32.941 21.833 1.275 -2.371 1.033 C10 A1IOL 8 A1IOL C13 C7 C 0 1 N N N N N N 91.368 -33.677 20.009 -1.246 -0.276 1.121 C13 A1IOL 9 A1IOL C15 C8 C 0 1 N N N N N N 92.252 -35.307 21.814 -3.584 -0.404 0.249 C15 A1IOL 10 A1IOL C17 C9 C 0 1 N N N N N N 93.220 -38.777 22.132 -7.207 -0.787 -0.497 C17 A1IOL 11 A1IOL C20 C10 C 0 1 N N N N N N 85.153 -30.480 21.655 4.622 -2.489 -1.807 C20 A1IOL 12 A1IOL C21 C11 C 0 1 N N N N N N 85.327 -27.053 17.759 1.432 4.021 1.489 C21 A1IOL 13 A1IOL N N3 N 0 1 N N N N N N 85.036 -28.461 17.485 1.308 3.091 0.364 N A1IOL 14 A1IOL C C12 C 0 1 N N N N N N 84.339 -28.734 16.318 0.446 3.365 -0.630 C A1IOL 15 A1IOL O O1 O 0 1 N N N N N N 84.029 -27.850 15.543 -0.216 4.384 -0.576 O A1IOL 16 A1IOL C1 C13 C 0 1 N N N N N N 85.466 -29.405 18.430 2.061 1.972 0.341 C1 A1IOL 17 A1IOL C11 C14 C 0 1 N N N N N N 88.894 -33.575 19.481 1.070 -0.154 1.999 C11 A1IOL 18 A1IOL C12 C15 C 0 1 N N S N N N 90.294 -33.219 19.015 -0.356 -0.500 2.345 C12 A1IOL 19 A1IOL C14 C16 C 0 1 N N N N N N 91.185 -35.022 20.728 -2.693 -0.628 1.472 C14 A1IOL 20 A1IOL C16 C17 C 0 1 N N N N N N 92.120 -36.628 22.576 -5.031 -0.755 0.600 C16 A1IOL 21 A1IOL C18 C18 C 0 1 N N N N N N 92.966 -40.146 21.543 -8.084 -0.567 -1.703 C18 A1IOL 22 A1IOL C19 C19 C 0 1 N N N N N N 87.359 -31.741 19.979 3.213 -0.752 1.196 C19 A1IOL 23 A1IOL C2 C20 C 0 1 Y N N N N N 85.081 -30.739 18.077 1.938 1.080 -0.745 C2 A1IOL 24 A1IOL C3 C21 C 0 1 Y N N N N N 84.690 -32.876 17.872 1.998 -0.499 -2.266 C3 A1IOL 25 A1IOL C9 C22 C 0 1 N N R N N N 87.308 -32.450 22.656 1.013 -2.305 -0.453 C9 A1IOL 26 A1IOL N2 N4 N 0 1 Y N N N N N 84.152 -32.353 16.806 1.120 0.387 -2.660 N2 A1IOL 27 A1IOL N4 N5 N 0 1 N N N N N N 88.297 -32.781 20.394 1.863 -1.074 1.414 N4 A1IOL 28 A1IOL N5 N6 N 0 1 N N N N N N 90.456 -31.758 18.868 -0.814 0.356 3.447 N5 A1IOL 29 A1IOL N6 N7 N 0 1 N N N N N N 92.381 -37.807 21.756 -5.884 -0.541 -0.572 N6 A1IOL 30 A1IOL O1 O2 O 0 1 N N N N N N 86.111 -29.055 19.408 2.840 1.735 1.248 O1 A1IOL 31 A1IOL O2 O3 O 0 1 N N N N N N 83.777 -32.327 21.114 3.910 -3.085 0.409 O2 A1IOL 32 A1IOL O3 O4 O 0 1 N N N N N N 87.531 -32.772 24.032 -0.123 -3.116 -0.760 O3 A1IOL 33 A1IOL O4 O5 O 0 1 N N N N N N 88.331 -34.552 19.013 1.503 0.951 2.247 O4 A1IOL 34 A1IOL O5 O6 O 0 1 N N N N N N 94.104 -38.579 22.964 -7.691 -1.186 0.540 O5 A1IOL 35 A1IOL H4 H1 H 0 1 N N N N N N 83.176 -31.475 14.770 -1.142 3.823 -2.512 H4 A1IOL 36 A1IOL H6 H2 H 0 1 N N N N N N 82.382 -29.864 14.772 -0.122 2.969 -3.694 H6 A1IOL 37 A1IOL H5 H3 H 0 1 N N N N N N 83.970 -30.081 13.963 -1.403 2.091 -2.826 H5 A1IOL 38 A1IOL H H4 H 0 1 N N N N N N 86.040 -33.357 19.964 4.526 -0.399 -0.502 H A1IOL 39 A1IOL H9 H5 H 0 1 N N N N N N 85.284 -32.862 23.199 2.094 -2.449 -2.299 H9 A1IOL 40 A1IOL H8 H6 H 0 1 N N N N N N 85.926 -33.870 21.858 2.212 -3.885 -1.269 H8 A1IOL 41 A1IOL H12 H7 H 0 1 N N N N N N 88.651 -34.008 22.048 0.340 -2.528 1.571 H12 A1IOL 42 A1IOL H11 H8 H 0 1 N N N N N N 89.386 -32.371 22.130 1.973 -3.178 1.255 H11 A1IOL 43 A1IOL H15 H9 H 0 1 N N N N N N 92.318 -33.732 19.456 -1.190 0.769 0.817 H15 A1IOL 44 A1IOL H16 H10 H 0 1 N N N N N N 91.441 -32.902 20.786 -0.906 -0.911 0.303 H16 A1IOL 45 A1IOL H19 H11 H 0 1 N N N N N N 93.237 -35.302 21.324 -3.527 0.642 -0.055 H19 A1IOL 46 A1IOL H20 H12 H 0 1 N N N N N N 92.205 -34.491 22.550 -3.244 -1.039 -0.570 H20 A1IOL 47 A1IOL H29 H13 H 0 1 N N N N N N 84.581 -30.360 22.587 5.598 -2.208 -1.410 H29 A1IOL 48 A1IOL H31 H14 H 0 1 N N N N N N 86.187 -30.138 21.813 4.642 -3.535 -2.114 H31 A1IOL 49 A1IOL H30 H15 H 0 1 N N N N N N 84.686 -29.881 20.859 4.386 -1.862 -2.668 H30 A1IOL 50 A1IOL H32 H16 H 0 1 N N N N N N 85.880 -26.970 18.706 2.201 4.760 1.266 H32 A1IOL 51 A1IOL H33 H17 H 0 1 N N N N N N 85.936 -26.639 16.942 0.479 4.526 1.650 H33 A1IOL 52 A1IOL H34 H18 H 0 1 N N N N N N 84.384 -26.492 17.834 1.707 3.470 2.388 H34 A1IOL 53 A1IOL H2 H19 H 0 1 N N N N N N 90.481 -33.706 18.047 -0.412 -1.545 2.649 H2 A1IOL 54 A1IOL H18 H20 H 0 1 N N N N N N 90.195 -35.026 21.207 -2.750 -1.673 1.776 H18 A1IOL 55 A1IOL H17 H21 H 0 1 N N N N N N 91.233 -35.825 19.977 -3.033 0.007 2.290 H17 A1IOL 56 A1IOL H22 H22 H 0 1 N N N N N N 91.096 -36.700 22.972 -5.087 -1.801 0.903 H22 A1IOL 57 A1IOL H21 H23 H 0 1 N N N N N N 92.836 -36.620 23.411 -5.371 -0.120 1.418 H21 A1IOL 58 A1IOL H26 H24 H 0 1 N N N N N N 93.674 -40.869 21.975 -8.459 0.457 -1.696 H26 A1IOL 59 A1IOL H24 H25 H 0 1 N N N N N N 91.937 -40.459 21.773 -7.504 -0.735 -2.610 H24 A1IOL 60 A1IOL H25 H26 H 0 1 N N N N N N 93.102 -40.107 20.452 -8.923 -1.261 -1.673 H25 A1IOL 61 A1IOL H27 H27 H 0 1 N N N N N N 87.633 -31.393 18.972 3.845 -1.450 1.746 H27 A1IOL 62 A1IOL H28 H28 H 0 1 N N N N N N 87.419 -30.901 20.687 3.405 0.261 1.549 H28 A1IOL 63 A1IOL H3 H29 H 0 1 N N N N N N 84.676 -33.936 18.079 2.259 -1.398 -2.804 H3 A1IOL 64 A1IOL H1 H30 H 0 1 N N N N N N 87.332 -31.353 22.582 0.794 -1.274 -0.728 H1 A1IOL 65 A1IOL H13 H31 H 0 1 N N N N N N 91.386 -31.554 18.561 -0.282 0.180 4.287 H13 A1IOL 66 A1IOL H35 H32 H 0 1 N N N N N N 89.800 -31.416 18.195 -0.771 1.331 3.190 H35 A1IOL 67 A1IOL H23 H34 H 0 1 N N N N N N 91.913 -37.892 20.877 -5.496 -0.221 -1.402 H23 A1IOL 68 A1IOL H7 H35 H 0 1 N N N N N N 83.313 -32.127 21.919 3.940 -4.036 0.232 H7 A1IOL 69 A1IOL H10 H36 H 0 1 N N N N N N 86.796 -32.469 24.552 -0.924 -2.868 -0.279 H10 A1IOL 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IOL C5 N3 SING N N 1 A1IOL O C DOUB N N 2 A1IOL N3 C SING N N 3 A1IOL N3 C4 SING N N 4 A1IOL C N SING N N 5 A1IOL N2 C4 SING Y N 6 A1IOL N2 C3 DOUB Y N 7 A1IOL C4 C2 DOUB Y N 8 A1IOL N C21 SING N N 9 A1IOL N C1 SING N N 10 A1IOL C3 N1 SING Y N 11 A1IOL C2 C1 SING N N 12 A1IOL C2 N1 SING Y N 13 A1IOL C1 O1 DOUB N N 14 A1IOL N1 C6 SING N N 15 A1IOL N5 C12 SING N N 16 A1IOL O4 C11 DOUB N N 17 A1IOL C12 C11 SING N N 18 A1IOL C12 C13 SING N N 19 A1IOL C11 N4 SING N N 20 A1IOL C6 C19 SING N N 21 A1IOL C6 C7 SING N N 22 A1IOL C19 N4 SING N N 23 A1IOL C13 C14 SING N N 24 A1IOL N4 C10 SING N N 25 A1IOL C14 C15 SING N N 26 A1IOL O2 C7 SING N N 27 A1IOL C7 C20 SING N N 28 A1IOL C7 C8 SING N N 29 A1IOL C18 C17 SING N N 30 A1IOL N6 C17 SING N N 31 A1IOL N6 C16 SING N N 32 A1IOL C15 C16 SING N N 33 A1IOL C10 C9 SING N N 34 A1IOL C17 O5 DOUB N N 35 A1IOL C8 C9 SING N N 36 A1IOL C9 O3 SING N N 37 A1IOL C5 H4 SING N N 38 A1IOL C5 H6 SING N N 39 A1IOL C5 H5 SING N N 40 A1IOL C6 H SING N N 41 A1IOL C8 H9 SING N N 42 A1IOL C8 H8 SING N N 43 A1IOL C10 H12 SING N N 44 A1IOL C10 H11 SING N N 45 A1IOL C13 H15 SING N N 46 A1IOL C13 H16 SING N N 47 A1IOL C15 H19 SING N N 48 A1IOL C15 H20 SING N N 49 A1IOL C20 H29 SING N N 50 A1IOL C20 H31 SING N N 51 A1IOL C20 H30 SING N N 52 A1IOL C21 H32 SING N N 53 A1IOL C21 H33 SING N N 54 A1IOL C21 H34 SING N N 55 A1IOL C12 H2 SING N N 56 A1IOL C14 H18 SING N N 57 A1IOL C14 H17 SING N N 58 A1IOL C16 H22 SING N N 59 A1IOL C16 H21 SING N N 60 A1IOL C18 H26 SING N N 61 A1IOL C18 H24 SING N N 62 A1IOL C18 H25 SING N N 63 A1IOL C19 H27 SING N N 64 A1IOL C19 H28 SING N N 65 A1IOL C3 H3 SING N N 66 A1IOL C9 H1 SING N N 67 A1IOL N5 H13 SING N N 68 A1IOL N5 H35 SING N N 69 A1IOL N6 H23 SING N N 70 A1IOL O2 H7 SING N N 71 A1IOL O3 H10 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IOL InChI InChI 1.06 "InChI=1S/C22H35N7O6/c1-13(30)24-8-6-5-7-15(23)19(32)28-10-14(31)9-22(2,35)16(11-28)29-12-25-18-17(29)20(33)27(4)21(34)26(18)3/h12,14-16,31,35H,5-11,23H2,1-4H3,(H,24,30)/t14-,15+,16+,22+/m1/s1" A1IOL InChIKey InChI 1.06 GVNVRCRSNWOHEA-YDGQEPMXSA-N A1IOL SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2ncn([C@H]3CN(C[C@H](O)C[C@]3(C)O)C(=O)[C@@H](N)CCCCNC(C)=O)c2C1=O" A1IOL SMILES CACTVS 3.385 "CN1C(=O)N(C)c2ncn([CH]3CN(C[CH](O)C[C]3(C)O)C(=O)[CH](N)CCCCNC(C)=O)c2C1=O" A1IOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCCC[C@@H](C(=O)N1C[C@@H](C[C@]([C@H](C1)n2cnc3c2C(=O)N(C(=O)N3C)C)(C)O)O)N" A1IOL SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCCCC(C(=O)N1CC(CC(C(C1)n2cnc3c2C(=O)N(C(=O)N3C)C)(C)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1IOL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(5~{S})-5-azanyl-6-[(3~{S},4~{S},6~{R})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-6-oxidanylidene-hexyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IOL "Create component" 2024-09-13 PDBE A1IOL "Initial release" 2024-10-16 RCSB #